genome.fa.s12.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  38  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10250514--10250560	18	2.6	18	89	0	76	19	17	29	34	1.94
10255171--10255357	52	3.6	52	88	1	259	26	14	24	34	1.94
10256802--10256867	28	2.4	28	80	12	73	37	0	1	60	1.06
10261621--10261663	18	2.4	18	92	7	70	44	0	0	55	0.99
10274239--10274296	9	6.6	8	75	16	53	81	0	18	0	0.70
10274227--10274302	19	3.8	20	81	8	84	81	2	15	0	0.80
10274238--10274302	21	3.2	21	86	4	89	81	0	18	0	0.69
10274238--10274302	32	2.2	31	75	10	55	81	0	18	0	0.69
10274249--10274301	27	1.9	28	88	11	83	79	0	20	0	0.74
10275061--10275088	14	2.0	14	100	0	56	42	7	14	35	1.73
10275238--10275413	50	3.5	50	85	1	228	36	17	23	21	1.94
10275472--10276240	40	19.3	40	72	14	305	33	23	16	26	1.96
10275650--10276240	80	7.4	80	81	7	585	32	24	16	26	1.96
10275472--10276240	200	3.8	200	80	6	690	33	23	16	26	1.96
10276265--10276608	155	2.2	154	86	3	478	38	17	19	25	1.93
10279225--10279253	14	2.1	14	93	6	51	13	0	27	58	1.36
10281224--10281375	34	4.5	34	77	9	141	33	34	15	17	1.91
10281224--10281374	68	2.2	68	82	5	180	33	34	15	17	1.91
10284438--10284476	18	2.3	18	86	8	55	69	2	0	28	1.02
10293260--10293452	51	3.8	51	87	2	262	30	22	13	33	1.93
10297335--10297494	52	3.1	52	82	2	191	40	23	11	24	1.88
10297343--10297587	28	9.1	27	72	9	126	42	23	9	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10297447--10297587	56	2.5	55	79	7	151	42	21	8	26	1.82
10304227--10304327	31	3.4	31	68	22	88	23	17	11	46	1.81
10304227--10304397	59	2.9	59	83	2	209	23	16	11	47	1.80
10304618--10304706	31	2.8	31	81	11	92	46	10	17	25	1.80
10304759--10304798	18	2.2	18	86	8	55	60	2	0	37	1.11
10308048--10308096	18	2.8	17	84	9	71	53	18	2	26	1.56
10310974--10311112	30	4.7	29	84	6	165	33	1	23	42	1.63
10310975--10311112	59	2.3	61	91	4	221	32	1	23	42	1.63
10311863--10311898	14	2.5	15	86	9	56	30	0	0	69	0.89
10312370--10312399	13	2.3	13	94	0	51	30	13	46	10	1.75
10313073--10313166	48	2.0	48	84	0	125	24	23	14	37	1.93
10313322--10313648	39	8.4	40	70	7	109	24	18	31	25	1.98
10313321--10313648	78	4.2	77	82	3	388	24	18	31	25	1.98
10313366--10313647	156	1.8	156	88	0	429	25	18	30	25	1.98
10313636--10313732	41	2.4	41	85	3	133	34	16	19	29	1.94
10313987--10314648	50	13.4	49	76	5	552	18	32	18	31	1.95
10313966--10314653	99	7.0	99	78	6	549	18	31	18	31	1.95
10313987--10314603	149	4.2	148	79	5	477	18	31	18	31	1.95
10315582--10315623	19	2.3	18	88	12	59	0	21	0	78	0.75
10315574--10315642	26	2.6	25	79	6	75	5	14	0	79	0.90
10320450--10320635	30	6.2	30	82	9	204	33	2	23	40	1.67
10320450--10320635	60	3.1	60	80	10	238	33	2	23	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10320465--10320634	89	1.9	90	90	6	274	33	1	22	41	1.64
10320448--10320635	59	3.2	60	83	5	256	34	2	23	39	1.67
10321883--10321912	13	2.3	13	94	0	51	30	13	46	10	1.75
10322077--10322109	17	1.9	17	100	0	66	57	0	0	42	0.98
10327839--10327868	15	2.0	15	93	0	51	40	0	3	56	1.16
10330021--10330060	10	3.8	10	81	12	53	47	0	0	52	1.00
10330018--10330069	22	2.4	22	96	0	95	50	1	0	48	1.12
10337181--10337327	70	2.1	70	87	2	206	42	2	21	33	1.67
10340464--10340495	15	2.1	15	94	0	55	56	0	9	34	1.32
10343089--10343134	15	3.0	15	84	12	58	2	21	0	76	0.90
10354339--10354368	13	2.3	13	94	0	51	53	0	3	43	1.17
10355287--10355315	13	2.1	14	93	6	51	55	3	20	20	1.58
10356904--10356943	15	2.6	15	80	4	53	57	0	2	40	1.12
10363182--10363228	19	2.4	20	89	3	69	46	19	17	17	1.84
10363236--10363279	21	2.1	21	86	0	61	34	15	31	18	1.92
10374572--10374669	50	1.9	52	89	4	155	44	14	28	12	1.81
10375466--10375603	51	2.7	50	71	2	132	36	20	19	23	1.95
10375560--10376023	50	9.2	50	66	16	188	37	17	18	27	1.93
10375532--10376014	101	4.8	98	73	11	314	36	16	19	27	1.93
10375572--10375923	105	3.5	101	77	8	290	36	16	19	27	1.93
10378026--10378082	18	3.2	17	83	11	62	17	3	1	77	1.00
10378039--10378108	5	13.8	5	83	16	67	17	2	2	77	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10378040--10378101	16	3.9	16	82	13	60	17	3	3	75	1.07
10379240--10379281	21	2.0	21	85	0	57	54	0	23	21	1.44
10393224--10393296	26	2.7	27	80	4	85	34	24	17	23	1.96
10396694--10396789	41	2.3	41	89	3	140	38	25	7	29	1.82
10396779--10396817	17	2.3	17	86	0	51	46	17	12	23	1.83
10406635--10406687	23	2.3	23	83	6	63	45	1	7	45	1.42
10410370--10410557	9	20.0	9	69	13	87	63	2	4	30	1.25
10410433--10410475	8	5.0	8	78	15	50	69	2	2	25	1.12
10410367--10410484	10	12.7	9	72	13	80	67	1	2	27	1.13
10410893--10411096	89	2.4	86	83	10	242	34	7	17	40	1.79
10412858--10412882	2	12.5	2	100	0	50	48	0	0	52	1.00
10414700--10414728	2	14.5	2	100	0	58	48	0	0	51	1.00
10415344--10415422	31	2.6	31	86	7	101	37	2	7	51	1.44
10418566--10418711	58	2.5	58	81	11	174	45	2	1	50	1.24
10418794--10418898	46	2.5	44	82	13	114	37	25	5	31	1.80
10418805--10418898	44	2.1	44	86	7	127	37	26	5	30	1.79
10418880--10418951	16	4.5	16	92	0	126	26	29	5	38	1.79
10419898--10420273	188	2.0	188	98	0	734	30	9	13	46	1.74
10420699--10420733	2	17.5	2	100	0	70	51	0	48	0	1.00
10426999--10427038	19	2.1	19	100	0	80	27	15	15	42	1.86
10427263--10427316	21	2.6	21	81	0	54	29	16	22	31	1.96
10430511--10430705	59	3.3	59	82	5	216	37	6	24	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10430699--10430928	58	3.9	57	79	7	214	34	2	26	35	1.71
10430699--10430928	29	7.9	29	74	11	168	34	2	26	35	1.71
10430785--10430936	30	5.2	30	78	9	111	34	1	25	38	1.65
10430708--10430936	59	3.9	58	77	9	152	35	3	26	35	1.72
10432803--10432841	19	2.1	19	85	9	53	25	5	15	53	1.62
10432827--10432875	23	2.2	22	85	3	62	40	0	2	57	1.10
10432846--10432889	17	2.6	17	85	7	63	50	0	4	45	1.22
10432879--10432923	16	2.8	16	79	3	54	57	11	0	31	1.33
10434032--10434083	26	2.0	26	96	0	95	30	17	28	23	1.97
10438413--10438467	21	2.6	21	88	5	76	32	25	12	29	1.93
10439726--10439807	37	2.2	38	82	6	96	31	12	23	32	1.91
10448204--10448247	22	2.0	22	82	8	54	34	22	2	40	1.67
10450228--10450262	17	2.1	17	100	0	70	34	42	0	22	1.54
10453501--10453534	8	4.2	8	88	0	50	67	0	2	29	1.05
10456964--10457147	30	6.2	29	77	10	169	37	2	22	38	1.66
10456961--10457178	60	3.7	58	78	11	210	36	2	23	37	1.68
10456984--10457178	89	2.2	90	83	3	241	38	2	22	36	1.66
10456984--10457177	30	6.5	28	78	10	140	38	2	22	37	1.66
10457673--10457727	28	2.0	28	86	10	78	40	20	3	36	1.70
10458989--10459049	6	10.7	6	74	10	56	55	1	1	40	1.19
10458987--10459049	17	3.7	17	86	0	99	57	1	1	39	1.18
10458995--10459049	11	4.9	11	80	4	56	56	1	1	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10458991--10459056	34	1.9	34	93	0	114	56	4	1	37	1.29
10458987--10459062	17	4.5	17	84	0	98	56	5	1	36	1.30
10459443--10459859	39	10.7	39	72	11	221	25	21	29	23	1.99
10459482--10459860	78	4.9	78	77	5	354	25	22	29	22	1.99
10459430--10459860	117	3.7	117	81	4	476	25	21	29	23	1.99
10471789--10471854	29	2.3	29	83	0	87	30	3	30	36	1.73
10471859--10472025	30	5.6	30	73	11	137	36	3	22	37	1.72
10473847--10473935	17	5.4	16	82	6	106	52	1	2	43	1.20
10473859--10473935	6	13.7	6	75	13	74	55	1	0	42	1.07
10473857--10473935	17	4.7	17	88	1	124	56	1	0	41	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132