genome.fa.s12.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  79  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23228988--23229036	25	2.0	25	91	0	80	55	18	10	16	1.69
23230382--23230563	29	6.2	30	78	14	112	36	26	3	32	1.73
23230378--23230563	60	3.2	59	84	6	191	36	27	3	33	1.73
23230368--23230658	30	10.0	29	74	12	170	33	27	3	35	1.74
23230402--23230620	58	3.7	58	81	7	196	35	26	3	35	1.74
23230594--23230657	28	2.2	29	83	10	78	32	29	1	35	1.67
23230918--23231111	97	2.0	97	89	0	298	28	20	15	36	1.93
23241787--23242344	39	14.4	40	69	8	276	24	30	19	25	1.98
23241902--23242362	78	5.9	78	81	1	492	25	29	19	25	1.99
23242772--23242865	11	8.5	11	73	12	59	36	0	5	58	1.21
23242777--23242886	17	6.5	17	88	0	157	39	0	4	56	1.20
23242777--23242886	6	19.3	6	70	10	79	39	0	4	56	1.20
23242777--23242886	51	2.2	51	91	0	175	39	0	4	56	1.20
23242828--23242882	28	2.0	28	85	7	76	41	0	1	56	1.10
23243281--23243329	25	2.0	25	91	0	80	59	22	6	12	1.55
23243832--23243858	3	9.0	3	100	0	54	66	0	0	33	0.92
23244367--23244526	29	5.5	29	76	14	116	36	25	3	34	1.74
23244779--23244972	97	2.0	97	86	2	273	28	19	17	35	1.94
23254220--23254252	17	1.9	17	88	11	50	18	6	3	72	1.18
23257633--23257669	19	1.9	19	88	0	56	29	5	10	54	1.57
23265887--23265935	23	2.2	23	82	10	57	53	12	4	30	1.57
23266605--23266647	21	2.0	21	86	8	61	69	6	16	6	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23269388--23270025	319	2.0	319	97	0	1213	39	13	12	34	1.83
23270347--23270405	23	2.6	25	84	12	74	71	1	5	22	1.15
23270378--23270438	14	3.9	15	74	19	54	63	4	4	26	1.35
23270348--23270502	56	2.8	55	74	14	138	67	4	4	23	1.27
23270515--23270579	8	8.7	7	72	24	53	75	1	4	18	1.05
23270515--23270579	15	4.3	15	77	18	73	75	1	4	18	1.05
23270515--23270576	28	2.1	30	85	11	85	75	1	4	17	1.05
23272432--23272582	50	3.0	49	71	13	126	27	19	16	36	1.93
23272253--23272918	197	3.4	196	83	3	813	27	19	16	35	1.94
23272649--23272903	50	5.2	50	69	13	186	28	21	13	36	1.92
23272361--23273007	197	3.3	196	83	4	737	28	19	15	36	1.93
23273636--23273709	20	3.7	20	74	3	69	45	12	17	24	1.82
23282718--23282760	15	2.8	15	83	13	52	41	13	9	34	1.77
23285053--23285102	25	2.0	25	84	7	66	36	16	12	36	1.85
23285488--23285517	9	3.3	9	90	0	51	40	0	3	56	1.16
23290869--23310155	585	33.0	585	97	0	36511	27	13	19	39	1.90
23313067--23313105	19	2.1	19	100	0	78	17	15	25	41	1.89
23321036--23321128	20	4.8	20	74	19	74	41	2	2	53	1.25
23322129--23322242	23	5.0	23	93	1	185	34	3	19	42	1.68
23329963--23329994	15	2.1	15	100	0	64	62	6	6	25	1.42
23331629--23331699	37	1.9	37	91	0	115	54	11	8	25	1.63
23335720--23335754	18	1.9	18	88	0	52	51	5	34	8	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23341592--23341652	23	2.5	24	82	17	74	73	0	22	3	0.97
23341594--23341650	30	1.9	29	83	16	73	77	0	21	1	0.86
23347298--23347350	20	2.6	21	76	11	65	49	3	7	39	1.49
23352983--23353068	44	2.0	44	97	0	163	31	15	13	39	1.86
23355204--23355251	18	2.8	17	79	14	55	4	18	2	75	1.07
23377578--23377650	35	2.1	35	97	0	137	15	2	27	54	1.54
23378330--23378367	18	2.0	20	90	10	62	44	13	10	31	1.77
23379376--23379413	19	2.0	19	89	0	58	39	7	18	34	1.80
23384534--23384622	35	2.6	33	79	10	90	19	24	24	31	1.98
23384424--23384698	145	1.9	146	84	3	367	23	20	22	32	1.98
23386035--23386068	3	11.3	3	100	0	68	67	0	0	32	0.91
23390737--23390761	13	1.9	13	100	0	50	80	0	0	20	0.72
23391962--23392274	169	1.8	171	81	6	386	25	32	0	41	1.56
23407140--23407216	3	25.7	3	84	5	102	67	1	31	0	0.99
23407620--23407657	17	2.2	17	90	0	58	23	13	10	52	1.71
23423879--23423922	23	2.0	22	86	4	61	38	0	15	45	1.47
23429227--23429327	36	2.8	36	89	5	168	36	20	25	16	1.94
23436895--23436942	24	2.0	24	84	12	62	14	8	6	70	1.31
23443772--23443899	18	7.1	18	76	0	112	33	27	20	18	1.96
23450933--23450984	18	2.9	18	94	0	86	26	26	25	21	1.99
23465129--23465161	17	1.9	17	93	0	57	12	12	0	75	1.04
23469730--23469758	12	2.5	12	94	5	51	6	0	37	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23478508--23478575	21	3.1	21	81	10	66	61	0	35	2	1.11
23478526--23478575	24	2.1	24	85	7	66	64	0	34	2	1.05
23482837--23482893	29	1.9	29	82	10	71	43	15	1	38	1.57
23493315--23493351	17	2.2	17	90	4	58	29	2	0	67	1.04
23494611--23494674	19	3.6	18	76	16	62	64	1	0	34	1.03
23497253--23497335	33	2.5	33	82	0	94	44	12	28	14	1.81
23502137--23502239	36	2.9	35	89	5	152	28	11	22	37	1.89
23502645--23502704	10	5.9	10	82	3	57	35	3	20	41	1.68
23502652--23502699	20	2.3	21	89	3	71	31	4	20	43	1.71
23503535--23503571	19	1.9	19	88	0	56	45	8	13	32	1.73
23505503--23505549	25	1.9	24	86	4	67	40	14	6	38	1.72
23505784--23505833	11	4.7	11	76	23	54	28	0	2	70	0.99
23505791--23505832	7	6.3	7	81	10	52	26	0	2	71	0.98
23505784--23505833	4	13.0	4	81	14	61	28	0	2	70	0.99
23505850--23505945	6	15.2	6	71	18	61	19	2	5	72	1.13
23505850--23505945	13	7.6	12	71	15	61	19	2	5	72	1.13
23505753--23505951	103	1.9	107	80	14	241	22	5	6	65	1.36
23505894--23505944	19	2.8	17	85	5	57	17	1	3	76	1.03
23505951--23505999	24	2.0	25	84	11	66	28	6	2	63	1.30
23507120--23507171	26	2.0	26	92	0	86	17	7	11	63	1.50
23513801--23513902	51	2.0	52	86	5	145	49	13	20	16	1.80
23513888--23513954	20	3.2	20	78	14	64	77	0	20	1	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23513909--23513944	16	2.3	16	90	4	56	77	0	22	0	0.76
23513914--23513964	27	1.9	27	84	11	70	74	1	23	0	0.92
23513887--23513961	24	3.3	21	70	20	53	77	2	18	1	0.96
23514973--23515423	147	3.1	146	79	5	462	40	17	22	19	1.92
23514973--23515461	49	10.0	49	76	4	317	40	17	22	20	1.91
23514973--23515461	98	5.0	98	75	6	366	40	17	22	20	1.91
23515486--23516039	45	12.5	45	80	5	581	31	25	15	27	1.96
23520812--23521225	217	1.9	218	88	1	634	34	24	15	26	1.95
23528092--23528136	6	7.5	6	89	0	63	22	31	0	46	1.52
23536314--23536338	11	2.3	11	100	0	50	48	0	8	44	1.32
23540426--23540454	9	3.2	9	100	0	58	51	0	0	48	1.00
23540418--23540472	29	2.0	27	85	7	74	54	0	1	43	1.10
23544817--23544846	3	10.0	3	100	0	60	66	0	33	0	0.92
23545512--23545730	28	7.8	28	83	3	262	42	10	24	22	1.84
23546471--23546538	31	2.2	31	92	5	111	30	22	27	19	1.97
23548135--23548181	13	3.2	14	82	14	51	74	0	0	25	0.82
23548135--23548181	22	2.1	22	88	7	69	74	0	0	25	0.82
23548331--23548396	19	3.4	19	73	10	53	36	1	1	60	1.15
23548339--23548396	19	2.8	20	76	10	64	36	1	0	62	1.06
23551927--23551978	15	3.2	15	73	19	50	53	1	0	44	1.11
23553219--23553261	19	2.3	19	79	0	50	30	11	9	48	1.71
23558999--23559125	56	2.3	57	88	2	186	52	0	26	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23559412--23559537	56	2.3	56	85	8	168	50	0	26	22	1.54
23568976--23569016	21	2.0	21	90	0	64	24	14	26	34	1.94
23568977--23569023	21	2.2	21	84	0	58	25	17	27	29	1.97
23572872--23572905	5	6.6	5	86	6	50	0	17	0	82	0.67
23572872--23572903	16	2.0	16	93	0	55	0	15	0	84	0.63
23574140--23574180	18	2.3	18	86	0	55	12	34	7	46	1.69
23581390--23581429	21	1.9	21	89	0	62	45	27	7	20	1.78
23592401--23592443	6	7.5	6	97	2	72	18	0	11	69	1.17
23593750--23593829	34	2.4	34	78	4	81	31	10	13	45	1.77
23594282--23594332	24	2.1	24	92	0	84	23	11	5	58	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132