genome.fa.s12.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  14  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3992216--3992648	106	4.0	106	88	7	661	33	19	20	26	1.97
3992366--3992492	68	1.9	67	93	6	220	33	19	19	27	1.96
3992386--3992621	118	2.0	118	96	0	436	34	17	22	26	1.96
3992280--3992726	224	2.0	221	86	8	618	34	17	21	27	1.96
3993024--3993106	6	13.7	6	76	12	71	49	1	2	46	1.22
3993025--3993084	31	1.9	31	90	6	95	45	1	3	50	1.28
3993190--3993226	13	2.7	15	80	20	53	37	27	16	18	1.92
3993284--3993314	15	2.1	15	100	0	62	19	54	12	12	1.70
3994962--3995148	30	6.4	30	88	7	269	39	25	1	34	1.63
3995036--3995081	24	1.9	24	100	0	92	39	30	2	28	1.69
3995006--3995111	54	2.0	54	98	0	203	39	27	0	32	1.63
3994972--3995141	84	2.0	84	94	0	295	38	26	1	33	1.64
3996618--3996651	3	11.3	3	100	0	68	67	0	0	32	0.91
3998335--3998381	21	2.2	21	88	0	67	34	23	17	25	1.96
3998432--3998661	114	2.0	117	83	4	297	32	24	9	33	1.88
4001783--4001889	28	3.8	28	76	11	101	35	3	25	35	1.74
4001645--4001921	146	1.9	145	87	2	403	38	5	23	33	1.77
4001645--4001978	146	2.3	145	84	6	399	37	4	24	33	1.76
4001923--4002213	59	5.0	57	73	10	185	34	5	26	33	1.79
4001899--4002156	29	8.8	30	74	10	192	34	5	27	32	1.80
4001899--4002156	59	4.4	59	77	6	247	34	5	27	32	1.80
4002143--4002228	30	2.9	29	80	10	95	38	3	18	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4003867--4003911	22	2.0	22	83	8	56	17	13	42	26	1.86
4004198--4004247	17	2.9	17	84	3	64	54	2	2	42	1.23
4004197--4004247	23	2.2	24	82	3	59	52	1	1	43	1.23
4004916--4004953	19	2.0	19	85	10	51	34	5	0	60	1.19
4006032--4006080	20	2.4	21	78	18	59	53	4	4	38	1.39
4008828--4008893	20	3.4	20	74	16	75	36	0	1	62	1.05
4012798--4012893	41	2.3	41	96	0	174	37	16	18	27	1.92
4013844--4013901	28	2.2	26	81	12	64	63	0	0	36	0.94
4016938--4016998	30	2.0	30	84	9	79	54	8	16	21	1.68
4019133--4019226	11	8.2	11	71	13	64	54	0	3	42	1.16
4019139--4019226	6	15.2	6	73	15	78	55	0	2	42	1.12
4019175--4019220	16	2.8	17	86	6	58	60	0	0	39	0.97
4020454--4020487	6	5.7	6	100	0	68	17	14	35	32	1.91
4021952--4021979	14	2.0	14	100	0	56	50	0	0	50	1.00
4021936--4021978	16	2.6	18	79	20	58	46	0	0	53	1.00
4023556--4023625	33	2.2	32	85	12	92	34	2	1	61	1.20
4023648--4023726	33	2.3	33	84	4	95	39	24	10	26	1.87
4023729--4023797	28	2.4	29	79	11	81	46	18	1	33	1.58
4032181--4032213	17	1.9	17	88	11	50	66	6	0	27	1.15
4044107--4044163	22	2.6	22	77	5	62	63	7	7	22	1.44
4050001--4050035	2	17.5	2	93	0	61	51	0	0	48	1.00
4052900--4053112	43	5.0	43	87	3	288	23	18	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4059064--4059208	30	4.9	29	76	13	104	34	4	24	36	1.75
4059126--4059211	30	2.9	29	91	5	127	36	2	24	37	1.68
4059135--4059259	30	4.2	30	73	13	91	32	4	21	41	1.74
4060425--4061279	433	2.0	433	99	0	1674	29	16	16	38	1.90
4061498--4061540	23	1.9	22	90	4	68	53	2	0	44	1.13
4068997--4069021	13	1.9	13	100	0	50	32	0	4	64	1.12
4077783--4077846	24	2.7	24	78	4	67	50	9	10	29	1.69
4077790--4077850	24	2.5	24	81	0	68	50	9	11	27	1.70
4088921--4089356	185	2.3	186	93	1	732	22	24	18	33	1.97
4098127--4098167	19	2.1	20	90	4	66	39	0	0	60	0.96
4099735--4099762	9	3.1	9	100	0	56	21	32	0	46	1.52
4105959--4106006	21	2.2	22	85	3	62	31	0	6	62	1.20
4106553--4106634	42	2.0	42	100	0	164	34	8	21	35	1.84
4110249--4110325	32	2.4	32	97	0	145	46	24	14	14	1.81
4115673--4115796	30	4.1	29	89	6	167	33	1	23	41	1.64
4115673--4115796	60	2.1	60	89	3	187	33	1	23	41	1.64
4115683--4115810	30	4.3	29	86	7	105	35	2	21	41	1.66
4115683--4115814	60	2.2	60	82	7	162	37	2	20	40	1.65
4116564--4116588	11	2.3	11	100	0	50	72	0	0	28	0.86
4116690--4116757	33	2.1	33	91	5	111	38	2	17	41	1.65
4133133--4133170	3	12.7	3	100	0	76	31	0	0	68	0.90
4135917--4135951	17	2.0	18	88	5	54	77	0	0	22	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4145836--4145900	25	2.8	24	83	6	71	80	12	6	1	0.97
4145836--4145888	25	2.0	26	85	7	72	79	15	3	1	0.96
4148811--4148858	21	2.3	21	78	7	53	37	2	4	56	1.30
4150054--4150093	20	2.0	20	100	0	80	20	10	50	20	1.76
4150141--4150217	31	2.5	32	75	12	81	42	5	5	46	1.48
4152831--4152995	30	5.6	30	87	5	212	38	3	22	36	1.70
4152883--4152937	19	3.3	19	63	36	54	29	3	27	40	1.73
4155040--4155150	6	18.8	6	76	14	106	52	0	0	46	1.06
4155065--4155172	31	3.7	30	81	8	109	55	3	0	40	1.17
4155041--4155160	37	3.2	36	81	11	111	52	1	0	45	1.10
4155063--4155160	11	8.5	11	80	13	83	56	2	0	41	1.11
4155065--4155139	17	4.6	17	85	11	104	56	1	0	42	1.08
4155511--4156107	31	17.4	36	66	16	311	29	20	15	34	1.93
4155507--4156109	68	8.8	68	89	0	909	29	20	15	34	1.93
4167953--4168105	30	5.2	29	86	3	148	36	3	20	38	1.72
4167973--4168105	30	4.5	30	87	4	180	37	3	18	39	1.69
4170150--4170249	6	16.8	6	76	13	91	50	2	0	48	1.12
4170151--4170241	37	2.5	36	79	13	105	49	2	0	48	1.13
4170175--4170259	17	5.2	17	80	11	88	54	3	0	42	1.17
4170175--4170242	14	5.0	14	77	15	56	54	2	0	42	1.15
4170213--4170267	27	2.0	27	89	0	83	54	5	0	40	1.23
4171524--4171557	3	11.3	3	100	0	68	32	35	32	0	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4173480--4173528	23	2.0	25	88	7	75	61	6	2	30	1.32
4174141--4174204	29	2.2	30	86	8	87	43	1	3	51	1.26
4174781--4174819	17	2.2	18	86	4	53	66	5	2	25	1.25
4174781--4174819	18	2.2	17	86	4	51	66	5	2	25	1.25
4177934--4178007	27	2.7	27	83	8	87	20	2	12	64	1.38
4178186--4178219	14	2.5	13	90	4	50	29	2	2	64	1.22
4188181--4188224	23	1.9	23	95	0	79	15	4	38	40	1.68
4188739--4188785	16	2.9	16	87	0	58	59	17	0	23	1.37
4192552--4192637	41	2.1	41	82	0	100	17	16	26	39	1.90
4193777--4193854	31	2.5	32	89	2	122	50	0	14	35	1.43
4194645--4194872	114	2.0	115	89	6	356	37	9	14	38	1.79
4200487--4200607	37	3.3	36	78	7	111	30	4	4	59	1.40
4200543--4200622	26	3.1	25	71	20	67	30	5	5	60	1.40
4200775--4200799	7	3.6	7	100	0	50	48	0	0	52	1.00
4201673--4201724	22	2.4	22	90	0	77	51	1	0	46	1.12
4201749--4201780	16	2.0	16	93	0	55	46	0	0	53	1.00
4202247--4202296	25	2.0	25	84	3	66	54	2	2	42	1.23
4203951--4204011	29	2.1	29	84	6	79	45	8	4	40	1.55
4204261--4204295	8	4.2	8	92	3	52	68	0	0	31	0.90
4216547--4216592	22	2.1	21	88	4	65	56	10	4	28	1.53
4222532--4222597	29	2.3	28	76	7	69	33	10	4	51	1.57
4222854--4222890	6	6.3	6	96	3	67	51	0	13	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4222854--4222900	18	2.7	17	87	6	67	48	0	12	38	1.41
4225457--4225507	21	2.3	22	83	12	61	33	3	11	50	1.57
4228518--4228560	21	2.1	20	82	4	50	69	6	0	23	1.12
4228727--4228778	12	4.3	12	85	0	50	69	11	5	13	1.35
4228727--4228778	24	2.2	24	82	0	59	69	11	5	13	1.35
4229238--4229273	19	1.9	18	94	5	63	63	5	0	30	1.17
4229416--4229448	8	3.9	9	88	11	52	69	9	0	21	1.15
4229456--4229499	22	2.2	20	88	12	63	63	6	13	15	1.49
4229461--4229512	22	2.4	22	93	0	86	65	9	9	15	1.47
4232398--4232439	18	2.2	20	80	16	54	71	9	4	14	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132