genome.fa.s12.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  55  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15463351--15463426	11	6.8	11	70	24	52	53	2	1	42	1.23
15464128--15464157	14	2.1	14	93	0	51	36	23	3	36	1.71
15464880--15465080	45	4.4	45	81	7	242	44	17	4	32	1.71
15464949--15465020	23	3.2	23	66	16	60	43	20	5	30	1.75
15464880--15465080	91	2.2	93	85	6	275	44	17	4	32	1.71
15464889--15465079	48	4.1	48	81	9	232	44	17	5	32	1.71
15467467--15467528	18	3.4	18	71	4	52	32	16	20	30	1.95
15467467--15467565	37	2.7	37	85	0	117	32	16	21	30	1.95
15467507--15467587	18	4.4	18	79	4	81	30	17	23	28	1.97
15467498--15467593	37	2.6	37	84	0	129	31	17	22	28	1.97
15467498--15467603	19	5.7	19	76	8	101	33	16	22	27	1.96
15468267--15468324	21	2.8	21	89	0	80	27	13	24	34	1.93
15468983--15469015	2	16.5	2	100	0	66	51	0	0	48	1.00
15469062--15469105	21	2.1	21	82	0	52	65	0	11	22	1.24
15470071--15470383	29	10.6	30	80	7	306	37	1	23	37	1.65
15470071--15470381	59	5.3	59	80	4	328	37	1	23	37	1.65
15470066--15470383	88	3.6	87	87	6	414	37	1	23	37	1.65
15472253--15472810	78	7.2	77	80	7	560	26	18	25	30	1.98
15472253--15472810	38	14.4	38	80	7	509	26	18	25	30	1.98
15472309--15472790	233	2.1	229	87	5	675	27	17	25	29	1.97
15478551--15478614	31	2.1	31	100	0	128	45	12	14	28	1.81
15483518--15483839	29	10.9	30	75	10	236	38	1	24	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15483518--15483839	59	5.5	59	75	7	253	38	1	24	34	1.67
15484495--15484521	14	1.9	14	100	0	54	14	18	0	66	1.25
15485482--15485603	30	4.1	30	86	4	151	30	7	20	41	1.79
15485584--15485657	29	2.5	30	80	10	80	27	10	22	39	1.87
15486442--15487006	144	4.0	142	81	9	668	43	3	10	43	1.53
15486440--15486998	288	2.0	284	85	6	754	44	3	9	42	1.53
15486865--15486910	22	2.2	21	85	14	60	56	4	2	36	1.31
15487110--15487231	61	2.0	61	100	0	244	47	1	27	22	1.61
15496102--15504944	737	12.0	737	96	0	15869	32	16	19	31	1.94
15510511--15510553	21	2.0	21	100	0	86	39	13	9	37	1.78
15510881--15510936	23	2.4	23	87	0	76	51	7	17	23	1.70
15513334--15513392	30	2.0	30	86	0	82	22	20	5	52	1.65
15515635--15515676	20	2.2	19	86	4	57	50	4	0	45	1.23
15515910--15515960	12	4.5	11	76	13	50	60	3	0	35	1.15
15515910--15515960	23	2.2	23	82	6	68	60	3	0	35	1.15
15516145--15516201	30	1.9	30	82	13	73	15	22	7	54	1.65
15516200--15516259	29	2.1	27	81	6	66	26	25	5	43	1.75
15517466--15517514	19	2.5	20	81	15	59	71	0	4	24	1.03
15518031--15518069	12	3.2	12	81	3	51	71	28	0	0	0.86
15518328--15518397	20	3.5	20	86	0	77	44	17	5	32	1.72
15519062--15519104	17	2.5	17	76	0	50	16	41	27	13	1.86
15522315--15522349	17	2.0	18	88	5	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15525350--15525405	28	2.0	28	100	0	112	53	7	17	21	1.67
15529631--15529686	28	2.0	28	96	0	103	21	26	17	33	1.96
15530666--15531311	148	4.4	148	88	2	881	44	8	3	43	1.53
15530962--15531206	52	4.9	53	69	16	162	45	9	3	41	1.55
15534004--15534061	30	1.9	31	89	10	93	18	29	0	51	1.47
15534298--15534339	16	2.6	17	85	7	52	30	7	4	57	1.47
15564069--15564161	35	2.7	35	84	3	116	33	11	32	22	1.90
15571348--15571434	35	2.5	35	86	5	122	37	10	31	20	1.86
15583267--15583324	22	2.8	20	74	10	55	63	6	5	24	1.40
15584233--15584296	27	2.4	27	78	5	67	23	23	28	25	2.00
15586632--15586674	3	14.3	3	100	0	86	0	32	0	67	0.91
15590040--15590082	19	2.2	19	87	4	59	51	11	2	34	1.51
15590610--15590683	30	2.5	30	86	4	87	28	14	10	45	1.79
15594960--15595010	17	3.1	17	85	2	77	39	0	3	56	1.18
15594962--15595015	6	9.5	6	76	11	51	38	0	3	57	1.17
15596896--15597196	29	10.4	28	78	9	250	36	26	1	35	1.65
15596901--15597152	84	3.0	83	82	6	299	35	27	1	36	1.65
15596906--15597152	56	4.3	55	77	10	248	36	27	1	35	1.65
15609131--15609820	39	17.7	38	68	15	150	25	29	18	26	1.98
15609086--15609860	78	9.9	78	84	0	976	25	29	18	26	1.98
15610279--15610379	17	6.1	17	82	3	125	36	0	4	57	1.27
15610281--15610384	6	18.5	6	72	13	60	36	0	4	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15610279--15610369	34	2.7	34	89	1	148	35	1	5	58	1.29
15610388--15610435	19	2.5	19	82	3	51	50	18	8	22	1.74
15612265--15612574	30	10.6	28	73	11	189	35	28	3	32	1.73
15612261--15612574	29	10.7	28	75	11	186	35	28	3	33	1.74
15612531--15612589	30	1.9	31	83	10	77	35	28	3	32	1.74
15612868--15613061	97	2.0	97	90	2	309	28	20	15	35	1.94
15620040--15620096	11	5.1	11	72	4	51	36	0	5	57	1.21
15620023--15620094	34	2.1	34	87	10	103	34	0	8	56	1.29
15620023--15620094	17	4.2	17	83	0	72	34	0	8	56	1.29
15621999--15622285	29	9.8	28	74	13	161	37	26	2	33	1.68
15622018--15622262	59	4.2	59	80	10	209	35	28	2	34	1.69
15622104--15622313	59	3.6	57	84	6	237	34	30	3	31	1.74
15622244--15622313	28	2.5	28	88	4	97	35	27	4	32	1.76
15626801--15626881	17	4.7	18	83	6	96	39	0	4	55	1.21
15626800--15626881	35	2.4	34	87	6	112	39	0	4	56	1.21
15626832--15626878	6	8.2	6	76	9	53	44	0	4	51	1.21
15628811--15629029	29	7.4	29	66	16	112	32	25	3	38	1.72
15628811--15629029	59	3.7	58	82	3	260	32	25	3	38	1.72
15634530--15634587	14	4.0	14	75	22	57	77	5	15	1	1.02
15635993--15637088	92	11.9	92	93	0	1800	33	16	16	33	1.92
15637713--15637822	35	3.2	34	83	7	116	43	0	3	51	1.25
15637745--15637791	6	8.2	6	76	9	53	44	0	4	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15637714--15637822	52	2.1	52	86	3	148	44	0	3	51	1.25
15637713--15637822	17	6.4	17	79	11	98	43	0	3	51	1.25
15639755--15640206	58	7.7	58	83	5	495	31	26	3	38	1.74
15639782--15640168	29	13.2	28	66	22	156	31	26	3	37	1.75
15647980--15648088	44	2.4	45	83	4	123	44	20	22	13	1.86
15648994--15649436	78	5.7	78	84	2	527	25	32	19	23	1.97
15649035--15649393	39	9.3	38	68	15	200	25	31	18	23	1.98
15648995--15649591	156	3.9	155	79	7	569	25	31	19	23	1.98
15649288--15649393	38	2.8	37	70	11	97	27	32	17	22	1.97
15650006--15650085	17	4.7	17	82	0	88	37	0	6	56	1.25
15650023--15650083	11	5.4	11	76	5	59	42	0	3	54	1.17
15650006--15650085	34	2.4	34	85	4	108	37	0	6	56	1.25
15650023--15650083	6	10.7	6	77	10	65	42	0	3	54	1.17
15650035--15650095	28	2.2	28	82	11	72	45	3	3	47	1.35
15651943--15652163	30	7.5	30	73	12	172	38	23	1	36	1.64
15651942--15652328	59	6.6	59	76	13	225	36	26	3	33	1.74
15652147--15652283	29	4.8	27	79	12	148	31	30	7	30	1.85
15652128--15652297	28	5.9	27	74	12	124	32	30	6	31	1.83
15656828--15656862	17	2.1	17	94	0	61	37	2	11	48	1.54
15657360--15657386	12	2.2	12	100	0	54	48	14	7	29	1.71
15663958--15664005	23	2.3	20	78	21	62	31	16	6	45	1.72
15663964--15664009	23	2.0	23	100	0	92	30	13	8	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15667117--15667159	8	5.1	8	83	8	50	51	2	2	44	1.27
15667117--15667149	17	1.9	17	93	0	57	51	3	0	45	1.16
15667119--15667157	17	2.3	17	86	0	51	56	2	2	38	1.27
15673456--15673496	14	2.9	14	92	0	73	34	12	7	46	1.69
15676736--15676802	30	2.2	30	89	5	100	38	10	19	31	1.85
15676791--15677151	29	12.3	30	73	11	195	34	5	24	36	1.78
15676872--15677158	59	4.9	57	78	8	240	34	4	24	36	1.75
15676868--15677163	88	3.4	85	79	9	285	33	4	26	36	1.75
15676867--15677193	29	11.1	28	74	11	221	33	3	25	36	1.75
15676926--15677193	59	4.5	59	72	14	171	33	4	25	36	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132