genome.fa.s12.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  43  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11626042--11626149	10	10.7	10	81	1	90	32	2	19	45	1.65
11626047--11626140	20	4.7	20	81	0	107	30	2	20	46	1.62
11626047--11626134	40	2.2	40	91	0	140	32	2	19	45	1.63
11626059--11626149	30	3.0	30	80	0	110	29	2	20	47	1.62
11626142--11626263	23	5.3	23	88	2	138	33	4	15	46	1.65
11629172--11629367	36	5.5	36	90	0	295	29	8	23	38	1.84
11630921--11631057	17	8.1	17	77	11	129	42	1	3	52	1.28
11630950--11631003	11	4.7	11	75	8	54	44	0	1	53	1.11
11630921--11631032	35	3.2	34	82	3	134	41	0	3	53	1.24
11630927--11631057	6	23.0	6	69	18	75	42	1	3	51	1.29
11631711--11631787	3	25.3	3	77	12	77	61	2	1	35	1.18
11631886--11631944	26	2.2	26	85	11	75	50	6	10	32	1.62
11632850--11633088	30	8.1	30	82	8	201	36	22	2	38	1.70
11632855--11633118	30	9.0	29	82	9	199	36	23	3	36	1.71
11632953--11633118	28	5.7	30	82	10	134	37	24	3	34	1.71
11632864--11633118	58	4.4	55	74	14	169	36	23	3	36	1.71
11633070--11633232	28	5.8	28	73	9	116	30	23	10	34	1.89
11637607--11637727	6	21.0	6	67	14	67	43	0	4	50	1.29
11637630--11637681	11	4.5	11	74	9	50	44	0	3	51	1.19
11637601--11637725	35	3.6	34	79	3	135	42	0	4	52	1.28
11637601--11637725	17	7.3	17	77	5	126	42	0	4	52	1.28
11638508--11638619	36	3.1	36	85	3	136	33	9	20	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11638529--11638631	36	2.9	36	85	0	134	34	8	18	37	1.82
11639026--11639137	10	11.2	10	81	0	125	33	1	21	43	1.63
11639034--11639137	30	3.5	30	90	0	145	32	1	21	44	1.63
11639130--11639251	23	5.3	23	85	2	129	31	4	17	46	1.66
11641024--11641164	6	25.0	6	67	17	70	41	2	3	53	1.30
11641018--11641129	17	6.5	17	76	4	116	40	1	3	54	1.28
11641047--11641100	11	4.7	11	77	8	63	40	1	1	55	1.21
11641018--11641129	35	3.2	34	79	3	125	40	1	3	54	1.28
11641018--11641164	17	9.1	16	70	17	90	40	2	3	53	1.29
11641846--11641885	3	13.7	3	84	5	55	65	0	0	35	0.93
11642947--11643147	30	6.8	30	74	10	137	35	22	2	39	1.68
11643158--11643236	29	2.8	28	88	3	113	31	30	7	30	1.85
11643099--11643236	58	2.4	58	80	6	145	32	26	7	34	1.84
11643132--11643253	29	4.3	29	79	5	106	32	26	9	31	1.89
11648024--11648065	22	1.9	22	85	9	59	52	0	0	47	1.00
11648780--11648808	2	14.5	2	100	0	58	48	0	0	51	1.00
11654372--11654409	20	1.9	20	84	10	51	47	5	26	21	1.71
11664699--11665251	49	11.3	49	75	5	404	34	16	27	21	1.95
11664699--11665085	98	3.9	98	83	0	461	35	16	26	21	1.95
11664699--11665065	196	1.9	196	86	0	527	35	16	26	21	1.95
11665765--11665885	60	2.0	60	90	3	190	23	38	8	29	1.84
11667390--11667435	25	1.9	25	82	8	60	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11670565--11670589	8	3.1	8	100	0	50	36	0	0	64	0.94
11677401--11677468	31	2.2	31	81	5	75	50	8	8	32	1.64
11678416--11678453	14	2.8	14	88	4	60	44	5	28	21	1.73
11681856--11681932	39	2.0	38	89	2	118	38	5	16	38	1.71
11682758--11683145	195	2.0	195	95	0	695	35	17	16	30	1.92
11684441--11684474	17	2.0	17	88	11	52	41	2	0	55	1.15
11686898--11686929	16	2.0	17	88	11	50	50	12	15	21	1.77
11687448--11687559	59	1.9	59	90	0	179	22	17	13	46	1.83
11687720--11687832	59	1.9	59	87	3	165	47	12	15	24	1.79
11687782--11687861	31	2.6	31	85	0	106	45	11	16	27	1.81
11687731--11687904	90	1.9	90	80	4	199	48	11	14	25	1.77
11690353--11690506	83	1.9	83	88	0	236	18	19	31	30	1.96
11692762--11692868	34	3.0	34	77	14	92	18	5	2	72	1.16
11692933--11692968	17	2.1	17	94	0	63	16	5	8	69	1.33
11692943--11692995	25	2.1	25	83	13	65	16	7	5	69	1.31
11693543--11693572	7	4.4	7	95	4	53	10	0	0	90	0.47
11697648--11697685	20	1.9	20	88	0	58	28	10	10	50	1.70
11697620--11697674	27	2.0	27	82	0	65	21	12	16	49	1.79
11700929--11700968	16	2.6	16	88	4	55	22	7	0	70	1.12
11700933--11700987	17	3.2	17	80	15	60	20	7	1	70	1.20
11701269--11701313	23	2.0	23	86	0	63	22	6	2	68	1.24
11705902--11705936	13	2.7	13	86	0	52	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11713488--11713527	21	2.0	20	90	5	62	70	7	15	7	1.33
11715272--11715304	17	1.9	17	88	11	50	18	6	3	72	1.18
11737253--11737307	21	2.6	21	82	0	74	38	34	14	12	1.84
11744538--11744571	17	2.0	17	88	0	50	20	20	8	50	1.75
11757571--11757613	21	2.1	20	86	4	59	53	4	37	4	1.43
11760535--11760583	24	2.0	25	84	7	66	10	44	0	44	1.37
11763151--11763195	17	2.8	16	81	18	58	0	22	0	77	0.76
11763151--11763196	10	4.3	11	86	8	60	0	21	0	78	0.76
11763794--11763835	18	2.5	16	85	11	57	54	14	14	16	1.71
11779396--11779421	13	2.0	13	100	0	52	15	15	23	46	1.83
11790717--11790755	21	2.0	20	90	10	62	51	0	15	33	1.44
11796894--11796918	10	2.5	10	100	0	50	40	24	16	20	1.91
11799697--11799721	13	1.9	13	100	0	50	24	16	12	48	1.79
11806987--11807025	20	2.0	19	85	5	51	69	0	28	2	1.02
11808664--11808862	42	4.7	41	86	6	265	25	27	23	24	2.00
11816108--11816469	41	8.8	41	82	1	402	19	30	20	30	1.97
11816120--11816437	166	1.9	164	85	2	440	17	30	22	30	1.97
11827030--11827072	10	4.4	10	82	11	54	0	11	4	83	0.78
11827029--11827072	18	2.4	18	92	3	70	0	11	4	84	0.77
11827593--11827641	17	2.9	17	78	0	62	51	12	18	18	1.76
11827592--11827649	17	3.4	17	72	9	55	50	10	22	17	1.76
11851246--11851306	24	2.5	24	83	0	77	50	11	13	24	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11882199--11882223	11	2.3	11	100	0	50	20	0	0	80	0.72
11882547--11882751	102	2.0	102	98	0	392	25	13	18	42	1.87
11887688--11887749	23	2.7	23	92	0	97	46	11	19	22	1.81
11887706--11887773	23	3.0	23	82	4	57	44	11	20	23	1.84
11891416--11891896	29	16.5	30	65	16	99	34	3	28	33	1.74
11891416--11891907	30	16.9	31	65	20	104	34	3	28	33	1.74
11891411--11891973	59	9.7	57	74	13	354	34	3	27	33	1.75
11891475--11891549	25	2.8	28	75	22	79	38	1	25	34	1.64
11891416--11891973	118	4.8	118	79	5	541	35	3	27	33	1.75
11891854--11891993	29	4.8	29	77	11	110	37	5	20	35	1.77
11893100--11893186	3	28.7	3	84	2	102	34	3	3	58	1.32
11893342--11893411	6	12.2	6	69	19	51	54	1	1	42	1.18
11893345--11893413	29	2.4	28	88	7	95	55	1	1	42	1.18
11893342--11893411	17	4.4	17	72	22	71	54	1	1	42	1.18
11893362--11893393	11	2.8	12	95	4	57	59	0	0	40	0.97
11904562--11904623	23	2.7	23	94	0	106	46	12	17	22	1.82
11904563--11904635	23	3.2	23	86	3	94	43	12	19	24	1.85
11904580--11904647	23	3.0	23	82	4	57	44	11	20	23	1.84
11908541--11909035	29	16.9	29	68	16	222	34	4	27	33	1.77
11908536--11909021	59	8.3	58	78	8	434	34	4	27	33	1.77
11908536--11908961	116	3.7	117	81	8	469	34	3	28	33	1.76
11908541--11909023	175	2.7	175	79	7	518	34	4	27	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11908536--11909035	30	17.1	28	68	19	210	34	4	28	32	1.77
11908987--11909065	30	2.7	29	78	5	86	37	6	22	32	1.80
11913615--11913648	11	3.0	11	87	8	50	38	0	2	58	1.13
11913616--11913668	6	9.0	6	76	12	56	41	1	1	54	1.22
11914961--11915071	29	3.8	29	82	7	134	36	26	3	33	1.74
11914954--11915093	29	4.8	29	79	7	133	37	26	4	32	1.76
11914974--11915107	29	4.6	29	74	10	87	35	27	5	32	1.79
11915109--11915239	59	2.2	57	81	7	147	32	21	6	39	1.78
11915226--11915305	29	2.8	29	81	7	74	32	28	10	28	1.89
11921282--11921445	49	3.3	49	79	4	168	38	20	29	11	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132