genome.fa.s12.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  80  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23596256--23596316	24	2.5	24	83	0	77	27	11	9	50	1.70
23611039--23611065	2	13.5	2	100	0	54	51	0	0	48	1.00
23616141--23616168	4	7.0	4	100	0	56	25	0	0	75	0.81
23617613--23617652	21	2.0	20	85	14	55	42	5	15	37	1.68
23618021--23618119	43	2.3	43	89	0	144	27	29	21	22	1.99
23625862--23625908	12	4.1	12	72	10	53	48	0	0	51	1.00
23625860--23625905	20	2.2	21	92	7	76	54	0	0	45	0.99
23625882--23625908	14	1.9	14	100	0	54	44	0	0	55	0.99
23625860--23625932	22	3.4	22	80	9	80	47	0	2	49	1.15
23625896--23625999	34	3.1	33	83	5	136	42	0	7	50	1.31
23630633--23630679	21	2.2	23	85	11	64	19	4	10	65	1.39
23631125--23631995	41	21.2	41	80	4	785	19	28	19	32	1.96
23631125--23631995	82	10.6	82	82	3	887	19	28	19	32	1.96
23631125--23631995	123	7.1	123	81	4	887	19	28	19	32	1.96
23638410--23638474	26	2.5	26	82	0	67	36	20	18	24	1.94
23638345--23638615	124	2.2	124	86	0	362	32	15	23	28	1.95
23638532--23638632	52	1.9	52	81	0	121	34	16	23	24	1.95
23638532--23638658	26	4.9	26	75	1	103	31	16	25	26	1.96
23640702--23640726	11	2.3	11	100	0	50	48	0	8	44	1.32
23643288--23643377	28	3.2	28	95	0	162	21	15	24	38	1.92
23646854--23646879	12	2.2	12	100	0	52	34	7	15	42	1.75
23647802--23647872	37	1.9	37	94	0	124	28	29	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23647897--23647997	37	2.7	37	77	7	105	32	24	13	28	1.94
23647981--23648034	26	2.1	26	89	0	81	24	18	25	31	1.97
23652196--23652266	37	1.9	37	88	0	106	32	30	14	22	1.93
23652247--23652384	37	3.7	37	78	8	120	30	23	16	28	1.96
23652376--23652426	26	2.0	26	88	0	75	29	21	19	29	1.98
23654680--23654899	110	2.0	110	85	4	302	40	17	13	29	1.87
23657224--23657453	46	5.1	46	89	4	328	23	15	28	32	1.95
23657223--23657466	91	2.7	91	85	6	331	22	16	27	33	1.96
23657301--23657817	81	6.2	81	82	5	536	23	16	28	32	1.96
23657394--23657817	39	10.5	39	72	12	266	23	15	28	32	1.95
23657401--23657817	164	2.6	162	87	2	586	22	16	28	32	1.95
23657878--23658112	48	4.9	47	75	7	211	26	19	19	34	1.96
23657892--23658152	47	5.4	47	74	6	211	26	19	20	33	1.96
23657879--23658157	95	2.9	95	89	1	414	26	19	19	34	1.96
23659996--23660090	49	1.9	49	80	0	109	13	22	15	48	1.80
23662875--23663081	110	1.9	110	90	1	335	41	14	12	31	1.83
23665833--23665893	21	2.9	21	80	4	61	44	29	6	19	1.76
23669574--23669620	23	2.0	23	91	0	76	34	19	19	27	1.96
23671956--23672024	28	2.5	28	90	0	102	27	11	17	43	1.83
23671976--23672037	28	2.2	28	97	0	115	24	12	20	41	1.87
23681064--23681157	47	2.0	46	81	6	109	32	7	11	47	1.68
23681598--23681659	3	20.7	3	93	0	106	64	3	0	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23683110--23683205	43	2.2	43	90	0	156	33	13	9	43	1.76
23683664--23683709	6	7.7	6	90	0	56	41	19	34	4	1.71
23683662--23683709	12	4.0	12	94	0	69	39	22	33	4	1.74
23684266--23684310	17	2.7	17	89	3	65	51	24	0	24	1.49
23684463--23684514	26	2.0	26	84	0	68	59	7	0	32	1.26
23688427--23688472	16	2.7	17	75	18	51	63	0	36	0	0.95
23694094--23694125	15	2.1	15	100	0	64	50	0	0	50	1.00
23694106--23694153	21	2.3	21	79	13	62	43	2	2	52	1.24
23716539--23716594	17	3.3	17	70	9	51	51	12	17	17	1.75
23726870--23726923	26	2.1	26	82	0	63	37	27	12	22	1.91
23729783--23729860	26	3.0	26	84	0	93	26	19	26	26	1.99
23730032--23730115	43	2.0	43	100	0	168	30	16	17	34	1.93
23730241--23731387	573	2.0	573	95	0	2078	27	13	23	34	1.93
23733165--23733219	20	2.8	20	80	0	65	45	10	5	38	1.63
23734699--23734744	24	1.9	24	100	0	92	30	21	21	26	1.99
23741847--23741874	6	4.7	6	100	0	56	14	50	0	35	1.43
23746583--23746650	17	3.8	17	74	14	55	4	4	19	72	1.19
23746642--23746705	23	2.9	23	79	6	62	15	1	15	67	1.32
23746667--23746706	20	2.0	21	90	5	64	17	0	12	70	1.18
23746771--23746808	12	3.2	12	85	7	51	21	0	5	73	1.02
23751810--23755154	216	15.9	216	78	10	3001	40	14	16	28	1.88
23752553--23755154	215	12.4	216	77	10	2383	40	14	16	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23752552--23755149	418	6.2	416	78	9	2525	40	14	16	28	1.88
23753284--23753344	32	1.9	32	86	6	88	49	16	8	26	1.73
23753284--23753352	32	2.2	32	84	5	86	49	15	10	24	1.76
23751810--23756550	835	5.7	829	79	8	4514	40	14	16	28	1.88
23755227--23756399	416	2.8	411	81	6	1280	40	14	16	28	1.88
23755229--23756550	216	6.3	206	78	8	934	39	14	17	28	1.88
23764708--23765447	216	3.4	215	84	2	975	40	14	17	27	1.89
23771936--23773777	216	8.8	214	80	7	1798	40	15	16	28	1.88
23772794--23773777	200	4.8	201	75	9	854	40	14	16	28	1.88
23773040--23773399	199	1.8	199	89	2	571	41	15	15	27	1.88
23771978--23773777	613	2.9	623	84	5	2236	40	15	16	28	1.88
23772851--23773630	413	2.0	389	79	9	826	40	14	15	28	1.87
23775164--23775726	214	2.6	214	84	3	731	41	14	16	28	1.87
23775590--23775856	133	2.0	133	100	0	534	45	14	14	25	1.83
23775166--23776282	560	2.0	562	90	1	1751	41	14	16	27	1.87
23775727--23776810	217	5.0	214	83	4	1351	40	14	17	27	1.88
23777848--23777927	39	2.1	39	97	0	151	28	20	28	22	1.98
23778218--23778301	39	2.2	39	93	0	141	55	13	4	26	1.57
23779565--23781537	201	9.6	201	74	14	1328	40	15	16	28	1.88
23779565--23780794	416	3.0	411	81	5	1277	39	15	16	28	1.89
23779910--23781537	617	2.6	611	84	5	2021	40	14	16	28	1.88
23780957--23781333	191	1.9	195	84	6	496	41	13	15	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23781608--23781760	80	1.9	80	90	0	243	29	14	21	34	1.93
23782199--23782333	48	2.8	48	91	3	207	54	14	8	22	1.68
23789241--23789324	39	2.2	39	91	4	134	55	11	5	26	1.58
23795212--23795273	31	2.0	32	87	3	90	37	17	11	33	1.86
23795325--23795408	39	2.2	39	93	0	141	55	14	3	26	1.55
23796150--23796245	48	2.0	47	95	2	174	51	14	10	23	1.73
23796301--23798447	215	10.1	214	72	11	1444	29	17	13	39	1.89
23796301--23799917	431	8.5	431	81	6	3977	29	17	14	39	1.89
23797177--23799917	860	3.2	855	81	6	3230	29	17	13	39	1.89
23798500--23799920	215	6.6	215	82	2	1562	28	17	14	38	1.89
23799758--23800087	167	2.0	167	87	3	477	26	19	14	39	1.90
23799572--23800291	382	1.9	381	82	3	903	28	19	14	38	1.91
23799921--23800521	215	2.8	215	83	3	733	28	17	13	39	1.89
23800522--23801876	215	6.3	214	82	5	1466	29	17	14	38	1.89
23799921--23801789	627	3.0	622	81	7	2108	29	17	14	38	1.89
23802501--23802533	10	3.3	10	95	0	57	33	9	39	18	1.82
23802902--23803000	39	2.5	39	90	0	162	53	15	5	26	1.62
23803361--23807611	215	20.2	215	77	8	3540	29	17	13	39	1.88
23805611--23805965	190	1.9	190	81	2	437	29	17	14	38	1.89
23805802--23819278	430	31.8	428	78	7	7755	28	17	14	39	1.88
23807418--23807800	188	2.0	189	98	0	750	25	18	15	40	1.89
23807832--23810226	215	11.2	214	80	4	2382	29	17	13	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23812257--23883966	215	334.9	215	74	10	44547	28	17	14	39	1.89
23819147--23819402	135	1.9	136	85	0	361	27	15	13	43	1.84
23819282--23883966	429	151.4	427	77	8	51064	28	17	14	39	1.89
23834193--23856232	214	103.2	214	81	6	23382	28	17	14	39	1.89
23858179--23858552	191	2.0	190	86	5	524	26	19	14	39	1.90
23860856--23864819	214	18.6	214	78	8	3587	28	18	14	39	1.90
23864983--23866442	426	3.4	421	82	7	1617	28	18	14	38	1.91
23868459--23868835	192	2.0	192	88	4	564	26	19	14	38	1.91
23881725--23883965	208	10.6	213	80	8	2267	28	17	14	39	1.89
23890088--23890112	13	1.9	13	100	0	50	24	16	12	48	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132