genome.fa.s12.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  114  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34681436--34681521	29	2.9	30	69	19	81	36	26	0	37	1.57
34682933--34682982	19	2.4	20	77	16	57	58	2	2	38	1.21
34694647--34694850	41	5.0	41	90	2	320	33	21	29	15	1.94
34697727--34697789	18	3.3	18	73	16	54	71	4	0	23	1.05
34699398--34699493	43	2.2	43	94	0	165	23	18	31	26	1.98
34708890--34708945	16	3.5	17	75	18	57	51	0	0	48	1.00
34708895--34708971	33	2.4	33	85	10	97	49	1	1	48	1.17
34735609--34735777	80	2.1	80	96	0	311	24	8	28	37	1.86
34735940--34736108	80	2.1	80	95	0	302	25	8	27	37	1.86
34735580--34736243	331	2.0	331	96	0	1238	27	10	26	34	1.90
34738580--34738719	70	2.0	70	100	0	280	17	15	40	27	1.90
34738925--34739120	93	2.1	93	97	0	365	33	19	23	22	1.97
34741317--34741461	73	2.0	73	98	0	281	45	19	9	25	1.80
34743356--34743404	24	2.0	24	96	0	89	18	12	36	32	1.88
34746364--34746425	30	2.1	30	84	0	79	20	19	30	29	1.97
34748677--34748754	21	3.8	19	71	14	57	33	24	16	25	1.96
34749463--34749518	24	2.3	24	84	6	69	21	25	23	30	1.99
34749475--34749537	24	2.6	24	89	0	90	23	23	26	25	2.00
34764188--34764222	2	17.5	2	100	0	70	51	0	0	48	1.00
34770024--34770055	15	2.1	15	94	0	55	50	12	15	21	1.77
34770023--34770061	15	2.4	16	83	12	53	51	10	15	23	1.73
34772539--34772784	120	2.0	120	100	0	492	27	9	16	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34776524--34776618	30	3.2	30	72	11	95	47	2	9	41	1.48
34776490--34776648	60	2.6	61	88	4	232	47	2	11	37	1.54
34784921--34784989	11	6.2	11	72	12	52	63	1	4	30	1.22
34786508--34786590	41	2.0	41	92	0	139	31	20	7	40	1.79
34787053--34787108	28	2.0	28	100	0	112	35	14	14	35	1.86
34789727--34789778	2	26.0	2	100	0	104	50	0	50	0	1.00
34791596--34791641	24	1.9	23	86	8	65	56	4	4	34	1.39
34797033--34797179	22	6.7	22	72	22	105	9	4	15	70	1.31
34797031--34797165	12	11.9	12	70	13	81	9	5	15	69	1.33
34797031--34797178	33	4.5	32	79	13	119	9	4	15	70	1.31
34799183--34799314	4	32.0	4	76	8	104	68	3	1	26	1.12
34799184--34799315	21	6.2	20	76	13	104	69	3	1	25	1.11
34799183--34799314	25	5.2	24	76	13	104	68	3	1	26	1.12
34803069--34803103	17	2.1	17	94	0	61	60	5	2	31	1.35
34803277--34803343	33	2.0	33	88	5	100	31	7	40	20	1.80
34817360--34817426	9	7.0	10	70	16	52	65	1	1	31	1.10
34817340--34817427	18	4.7	18	72	12	61	65	2	1	30	1.12
34818422--34818465	18	2.6	16	76	16	52	34	0	6	59	1.24
34818424--34818462	18	2.2	18	86	9	53	28	0	7	64	1.21
34818443--34818483	21	1.9	21	85	5	55	26	0	7	65	1.18
34818731--34818770	21	1.9	21	89	0	62	30	17	22	30	1.97
34819722--34819748	14	1.9	14	100	0	54	0	22	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34820054--34820098	22	2.1	22	87	4	65	51	11	13	24	1.73
34823744--34823800	30	1.9	30	85	7	80	59	0	1	38	1.08
34829213--34829283	9	8.1	8	72	21	54	32	1	1	64	1.11
34829211--34829284	18	4.2	18	76	10	80	33	1	1	63	1.11
34837535--34837699	87	1.9	85	83	3	215	27	15	21	35	1.94
34839615--34839647	3	11.3	3	87	6	50	66	0	3	30	1.06
34840692--34840746	13	4.2	13	90	2	83	38	21	23	16	1.93
34840695--34840746	7	7.7	7	78	8	63	34	23	25	17	1.96
34840735--34840791	21	2.8	21	83	2	62	28	29	22	19	1.98
34841230--34841304	11	6.5	11	73	14	62	69	0	25	5	1.09
34841230--34841302	23	3.1	23	75	11	67	69	0	24	5	1.09
34843483--34843518	2	18.0	2	100	0	72	50	0	0	50	1.00
34855503--34855595	46	2.0	46	100	0	186	36	23	15	24	1.93
34857167--34857206	11	3.6	11	96	0	71	27	27	2	42	1.68
34858916--34858943	4	7.0	4	100	0	56	25	0	25	50	1.50
34862890--34862998	23	4.7	23	70	16	73	6	7	20	66	1.39
34862890--34862939	12	4.3	12	73	19	52	2	8	26	64	1.32
34862907--34862998	24	3.9	24	77	7	89	7	7	19	65	1.43
34872259--34872288	3	10.0	3	100	0	60	66	0	0	33	0.92
34875530--34875664	40	3.4	38	73	12	96	30	28	20	21	1.98
34875562--34875665	37	2.7	38	76	5	93	31	26	19	22	1.97
34875770--34875807	12	3.1	13	81	14	53	26	28	0	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34875957--34876002	22	2.1	22	95	0	83	34	17	2	45	1.61
34877757--34878062	52	5.7	52	80	8	353	26	12	25	35	1.92
34877755--34878117	165	2.2	165	93	0	609	27	12	24	34	1.92
34879256--34879294	18	2.2	18	90	4	62	46	0	0	53	1.00
34894490--34894683	63	3.1	62	78	8	196	26	10	32	30	1.90
34897588--34897616	11	2.5	12	94	5	51	41	0	0	58	0.98
34897529--34897614	17	5.1	17	69	0	64	34	4	5	54	1.45
34898306--34898372	3	22.7	3	96	3	127	31	0	0	68	0.90
34899633--34899841	30	7.0	30	70	17	114	37	24	3	34	1.72
34899647--34899900	59	4.3	59	82	1	249	37	23	4	35	1.75
34899768--34899868	29	3.5	28	76	14	96	36	26	3	32	1.75
34899644--34899900	118	2.2	119	82	4	297	36	22	4	36	1.74
34899648--34899873	30	7.6	31	73	14	109	37	24	3	34	1.73
34901869--34901958	39	2.3	39	84	0	108	42	20	4	33	1.72
34902789--34902846	30	2.0	29	89	3	89	13	17	24	44	1.85
34904522--34904582	6	10.2	6	96	0	113	16	49	1	32	1.56
34906820--34906857	18	2.1	18	85	9	51	50	13	10	26	1.73
34911407--34912034	314	2.0	314	96	0	1148	31	18	15	35	1.92
34913361--34913421	20	3.0	20	65	15	54	31	3	19	45	1.66
34913942--34914157	60	3.7	59	84	6	276	31	14	19	33	1.93
34924469--34924532	25	2.5	25	80	12	69	53	6	1	39	1.36
34927347--34927385	17	2.2	19	86	9	55	82	2	10	5	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34928187--34928214	1	28.0	1	100	0	56	0	100	0	0	0.00
34929982--34930090	19	5.7	19	63	20	50	63	0	6	29	1.25
34929972--34930054	30	2.8	30	79	13	100	61	0	7	31	1.23
34929976--34930054	29	2.6	30	82	11	99	59	0	7	32	1.26
34930013--34930095	9	9.0	9	69	27	50	62	1	4	31	1.23
34933205--34933238	17	2.0	17	94	0	59	55	0	0	44	0.99
34934257--34934298	21	2.0	21	81	9	50	50	0	0	50	1.00
34934967--34935016	24	2.1	23	82	14	57	36	4	4	56	1.37
34935221--34935259	10	4.1	9	84	12	51	30	2	2	64	1.21
34935221--34935259	19	2.1	19	85	9	53	30	2	2	64	1.21
34935723--34935756	17	1.9	18	88	5	52	82	8	8	0	0.85
34937072--34937102	15	2.0	16	93	6	55	64	0	12	22	1.27
34937117--34937143	12	2.2	12	100	0	54	55	0	0	44	0.99
34937360--34937418	6	9.8	6	73	14	50	38	5	1	54	1.33
34937376--34937402	14	1.9	14	100	0	54	37	11	0	51	1.37
34937475--34937577	28	3.7	28	93	0	179	44	31	11	12	1.78
34939240--34939458	29	7.5	29	71	12	144	30	29	3	36	1.75
34939238--34939529	58	5.0	59	82	4	322	29	30	5	34	1.79
34939238--34939488	29	8.5	30	72	18	129	31	29	3	35	1.76
34939570--34939615	15	3.0	16	75	12	51	21	13	6	58	1.57
34941293--34941327	18	1.9	18	94	0	61	37	8	2	51	1.47
34942714--34942740	2	13.5	2	100	0	54	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34948139--34948164	10	2.6	10	100	0	52	80	0	0	19	0.71
34953085--34953134	26	1.9	26	83	0	64	50	2	0	48	1.12
34953115--34953149	18	1.9	18	94	0	61	45	0	0	54	0.99
34953740--34953784	17	2.6	18	89	3	65	42	2	0	55	1.12
34953753--34953793	17	2.5	16	82	17	57	46	2	0	51	1.14
34955353--34955517	59	2.8	59	84	4	201	31	24	4	39	1.76
34955353--34955519	29	5.7	30	69	9	103	31	25	4	38	1.76
34955618--34955722	30	3.5	30	80	5	113	37	24	1	36	1.67
34955441--34955749	118	2.6	117	78	7	304	32	23	6	36	1.81
34955353--34955721	59	6.3	56	76	9	186	32	23	5	37	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132