genome.fa.s12.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  88  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26878051--26878092	21	2.0	21	90	4	68	40	16	23	19	1.91
26880094--26880142	3	16.3	3	100	0	98	32	0	0	67	0.91
26880819--26880880	31	2.0	31	81	6	72	20	1	3	74	1.05
26880839--26880863	4	6.2	4	100	0	50	24	0	0	76	0.80
26886786--26887103	40	7.9	40	83	0	330	23	19	29	27	1.98
26887271--26887307	2	18.5	2	100	0	74	48	0	0	51	1.00
26898805--26898859	22	2.6	21	82	5	74	67	12	3	16	1.36
26902882--26903011	41	3.2	41	95	0	233	40	9	26	23	1.85
26904239--26904278	17	2.4	16	84	12	53	12	15	0	72	1.12
26905206--26905267	6	9.8	6	80	16	72	69	0	1	29	0.98
26905207--26905269	32	1.9	33	93	3	110	71	0	1	26	0.95
26905207--26905268	26	2.4	26	83	2	90	70	0	1	27	0.96
26905321--26905449	61	2.1	61	94	0	222	31	24	19	24	1.98
26912217--26912287	32	2.2	32	82	5	90	30	4	16	47	1.66
26913241--26913277	19	1.9	19	88	0	56	29	5	21	43	1.75
26913379--26913452	22	3.3	22	67	14	60	32	5	18	43	1.73
26913384--26913460	24	3.3	24	68	14	70	29	5	20	44	1.73
26913376--26913477	46	2.2	46	91	0	159	29	6	19	44	1.77
26914565--26914639	32	2.2	36	84	15	97	56	2	0	41	1.13
26914607--26914653	18	2.6	18	86	6	69	55	0	2	42	1.12
26914603--26914653	8	6.0	8	77	18	50	58	0	1	39	1.09
26916130--26916264	30	4.6	28	81	11	146	40	21	1	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26916130--26916264	59	2.3	59	87	7	186	40	21	1	36	1.63
26916130--26916278	29	5.1	29	82	5	165	38	20	2	38	1.64
26919743--26919852	57	1.9	57	85	3	150	51	12	24	10	1.72
26921326--26921405	13	5.9	14	80	15	96	83	0	16	0	0.64
26921325--26921405	7	11.7	7	82	15	98	83	0	16	0	0.64
26921336--26921406	6	11.0	6	85	14	81	83	0	16	0	0.66
26921324--26921393	19	3.7	18	87	9	95	84	0	15	0	0.63
26921326--26921406	34	2.4	34	89	6	119	82	0	17	0	0.66
26922166--26922217	24	2.2	24	89	0	77	30	25	13	30	1.94
26922720--26923040	45	7.4	43	80	10	327	30	25	18	25	1.98
26922720--26923003	88	3.2	88	85	9	341	30	26	18	25	1.98
26922724--26923040	134	2.4	133	87	6	434	30	25	18	25	1.98
26923809--26923918	55	2.0	55	98	0	211	54	2	23	19	1.57
26924651--26924846	30	6.7	30	82	5	188	37	22	4	35	1.74
26941395--26941428	15	2.4	14	90	5	50	14	11	5	67	1.39
26957861--26957903	21	2.0	22	86	4	61	30	18	4	46	1.69
26975630--26975672	21	2.0	22	86	4	61	27	18	4	48	1.68
26978318--26978363	24	1.9	24	82	8	58	47	8	13	30	1.72
26979876--26979918	2	21.5	2	81	9	52	46	2	4	46	1.36
26980562--26980599	17	2.2	18	86	13	53	60	5	13	21	1.52
26980991--26981047	3	19.0	3	76	20	57	1	28	1	68	1.09
26980994--26981047	18	3.1	17	86	5	72	1	27	1	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26980991--26981047	30	1.9	30	89	7	89	1	28	1	68	1.09
26996405--26996447	21	2.0	22	90	4	70	30	20	4	44	1.72
26997612--26997767	50	3.1	52	75	10	135	35	16	11	36	1.84
27006357--27006406	16	3.4	16	76	20	56	18	20	18	44	1.88
27006335--27006391	22	2.7	21	75	20	55	17	24	19	38	1.93
27006351--27006406	30	2.0	30	89	10	91	17	19	17	44	1.87
27010898--27010933	18	1.9	19	88	5	56	11	13	0	75	1.06
27014577--27014619	19	2.3	19	95	0	77	23	13	34	27	1.93
27034214--27034619	202	2.0	202	100	0	812	39	21	13	26	1.90
27040916--27041039	50	2.4	50	82	5	142	37	11	15	36	1.83
27041248--27041280	17	1.9	17	88	11	50	66	6	0	27	1.15
27041904--27041936	17	1.9	17	88	11	50	27	0	6	66	1.15
27047422--27047570	79	1.9	80	91	1	246	28	15	22	34	1.94
27048012--27048130	48	2.5	47	90	2	177	52	14	8	25	1.69
27049949--27050062	27	4.1	28	76	9	103	19	13	2	64	1.39
27049970--27050027	25	2.4	24	75	25	59	15	17	3	63	1.44
27051267--27051409	50	2.8	50	77	9	146	35	12	15	36	1.85
27058210--27058250	18	2.4	17	87	4	55	85	0	4	9	0.73
27058210--27058252	17	2.5	17	82	14	52	83	0	4	11	0.78
27066551--27066747	80	2.5	80	89	1	297	30	27	19	22	1.98
27068329--27068431	36	2.9	35	86	5	134	37	13	26	22	1.91
27071472--27071674	44	4.7	43	82	4	192	34	9	23	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27071472--27071669	88	2.3	87	81	4	220	34	9	23	32	1.87
27077828--27078044	44	5.0	44	84	2	251	35	9	23	30	1.87
27084834--27084874	19	2.1	20	86	4	57	17	14	9	58	1.62
27098751--27098839	38	2.4	38	81	5	110	30	20	15	33	1.94
27098826--27098879	26	2.1	26	85	0	72	27	22	22	27	1.99
27107202--27107226	9	2.8	9	100	0	50	56	0	0	44	0.99
27109537--27109567	11	2.8	11	95	0	53	41	16	16	25	1.88
27111136--27111177	22	1.9	22	90	0	66	42	7	4	45	1.52
27113539--27113579	16	2.7	15	85	7	55	24	2	14	58	1.49
27115579--27115613	15	2.2	16	90	5	54	28	0	20	51	1.47
27115648--27115707	17	3.6	17	79	4	77	26	3	23	46	1.68
27115713--27115798	31	2.8	31	89	0	127	26	8	23	41	1.82
27115702--27115810	31	3.5	31	82	5	87	29	8	22	40	1.83
27116546--27116584	20	1.9	21	89	5	62	61	0	30	7	1.24
27117932--27118171	83	2.9	85	78	11	266	30	12	12	44	1.80
27117932--27118154	79	2.8	77	78	10	191	30	13	12	44	1.80
27119226--27119316	11	8.6	11	77	13	86	49	0	1	49	1.08
27120222--27120404	47	3.9	47	96	0	330	52	0	0	47	1.00
27120222--27120390	22	7.4	22	76	18	150	52	0	0	47	1.00
27120381--27120423	21	2.0	23	90	9	72	53	0	0	46	1.00
27122927--27122975	21	2.3	21	83	13	57	32	26	10	30	1.89
27123061--27123120	24	2.5	24	94	0	102	33	28	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27131278--27131337	24	2.5	24	94	0	102	31	25	18	25	1.97
27137090--27137193	51	2.0	51	83	7	131	34	0	9	54	1.39
27138005--27138076	30	2.4	31	85	2	92	47	18	13	20	1.82
27147400--27147425	6	4.3	6	100	0	52	34	34	0	30	1.58
27157299--27157357	29	2.0	29	86	0	82	37	32	10	20	1.86
27174129--27174213	18	4.7	18	88	1	107	20	22	27	30	1.98
27179596--27179626	16	1.9	16	100	0	62	19	22	25	32	1.97
27180581--27180681	18	5.6	18	86	2	121	24	21	20	32	1.98
27180581--27180688	36	3.0	36	82	2	144	25	20	22	31	1.98
27187992--27188030	20	2.0	20	85	10	53	61	2	30	5	1.31
27189693--27189731	20	1.9	21	84	5	53	10	30	0	58	1.31
27206638--27206679	20	2.1	19	86	8	57	26	7	14	52	1.67
27217927--27218082	80	2.0	80	92	0	258	22	23	26	27	1.99
27219752--27219796	21	2.1	21	83	0	54	33	6	15	44	1.73
27229747--27229794	14	3.1	16	79	14	55	52	0	2	45	1.12
27230142--27230221	31	2.6	30	84	5	90	33	7	11	47	1.67
27230415--27230473	31	2.0	30	86	6	84	49	15	3	32	1.61
27230410--27230476	31	2.3	27	80	14	80	46	13	4	35	1.63
27230948--27231001	26	2.1	26	82	0	63	40	12	20	25	1.88
27231569--27231632	23	2.8	24	83	7	78	32	20	10	35	1.87
27231612--27231680	35	2.0	33	83	10	86	20	17	10	52	1.73
27238054--27238152	39	2.5	40	86	3	146	30	18	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27244050--27244094	23	2.0	23	86	0	63	31	13	20	35	1.91
27244322--27244441	58	2.1	58	88	3	179	46	21	0	30	1.57
27251473--27251718	122	2.0	122	97	0	465	38	14	16	30	1.89
27254090--27254137	6	7.8	6	86	4	60	70	2	2	25	1.09
27255772--27255810	13	2.9	14	92	3	62	20	30	17	30	1.96
27255784--27255831	22	2.2	21	88	3	69	18	27	18	35	1.95
27255792--27255872	19	4.1	19	82	7	83	18	19	18	43	1.89
27266734--27266770	18	2.1	18	89	0	56	48	0	27	24	1.51
27270274--27270307	15	2.4	14	90	5	50	14	11	5	67	1.39
27272622--27272661	18	2.3	18	86	4	55	17	15	10	57	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132