genome.fa.s12.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  131  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40736640--40736690	2	25.5	2	100	0	102	49	0	0	50	1.00
40738822--40738890	34	2.0	34	85	0	93	37	4	5	52	1.46
40751557--40751588	2	16.0	2	100	0	64	50	0	0	50	1.00
40753064--40753152	44	2.0	44	100	0	178	43	6	24	24	1.78
40753868--40753898	12	2.6	12	94	0	53	9	45	22	22	1.81
40756614--40756707	45	2.1	45	100	0	188	36	6	14	42	1.72
40759047--40759087	19	2.2	19	90	0	64	46	4	9	39	1.58
40763192--40763223	6	5.5	6	92	7	57	15	15	50	18	1.79
40763193--40763232	18	2.2	18	86	8	55	17	17	52	12	1.74
40763686--40763733	21	2.3	21	92	0	78	54	0	6	39	1.26
40775727--40775769	21	2.0	22	90	4	70	58	0	2	39	1.11
40783335--40783406	29	2.5	29	86	0	99	44	19	9	26	1.81
40783992--40784032	2	21.0	2	90	5	66	51	2	0	46	1.14
40783982--40784028	8	5.9	8	94	0	58	53	6	0	40	1.27
40785884--40785937	19	3.0	18	76	12	58	27	1	3	66	1.19
40791497--40791707	105	2.0	105	100	0	422	19	2	25	51	1.61
40810197--40810236	20	2.0	20	85	9	55	47	0	2	50	1.14
40813110--40813142	16	2.1	16	88	11	50	36	6	9	48	1.60
40821809--40821853	2	22.5	2	95	0	81	46	0	2	51	1.13
40826678--40826708	5	6.2	5	100	0	62	58	0	0	41	0.98
40832315--40832368	23	2.4	23	75	3	56	51	1	1	44	1.22
40842851--40842909	31	1.9	31	89	0	91	37	8	10	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40849482--40849527	6	7.7	6	95	0	83	50	19	0	30	1.48
40849504--40849703	68	3.0	66	80	10	248	45	19	10	25	1.82
40849770--40849813	20	2.1	22	87	8	65	52	11	6	29	1.63
40852101--40852137	6	6.5	6	87	12	60	32	0	16	51	1.45
40852119--40852430	144	2.1	147	86	5	443	31	9	21	36	1.86
40854970--40855002	17	2.0	17	88	5	50	12	3	6	78	1.04
40859892--40859954	31	2.1	29	85	5	81	34	4	20	39	1.74
40861492--40861554	24	2.6	24	82	0	63	30	53	7	7	1.58
40861511--40861559	3	16.3	3	79	8	55	30	61	6	2	1.32
40861598--40861676	30	2.6	30	82	7	90	18	53	7	20	1.69
40861657--40861686	12	2.5	12	88	0	51	23	63	0	13	1.29
40861672--40862310	66	9.3	66	64	12	230	22	53	8	15	1.70
40861628--40862355	135	5.3	135	91	2	1098	22	52	8	16	1.70
40861628--40862355	276	2.7	270	87	5	1116	22	52	8	16	1.70
40869878--40870038	81	1.9	82	85	9	218	21	51	11	14	1.74
40870185--40870353	56	3.0	55	68	14	130	24	50	7	16	1.71
40874114--40874168	24	2.4	24	80	14	62	50	3	1	43	1.30
40882668--40882700	15	2.2	15	94	0	57	27	9	15	48	1.74
40883889--40883934	24	1.9	24	86	0	65	39	8	8	43	1.66
40887236--40887267	2	16.0	2	100	0	64	50	0	0	50	1.00
40890399--40890434	2	18.5	2	94	5	65	50	0	0	50	1.00
40891389--40891446	31	1.9	30	83	13	75	43	15	8	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40891384--40891450	31	2.3	27	79	18	73	43	13	7	35	1.72
40891776--40891850	31	2.5	30	80	10	98	44	9	2	44	1.50
40900378--40900402	2	12.5	2	100	0	50	52	48	0	0	1.00
40901928--40902023	30	2.9	34	78	16	119	43	1	0	55	1.06
40909817--40909978	81	2.0	81	83	4	202	46	20	11	20	1.81
40924096--40924460	29	12.5	29	68	21	178	36	4	27	31	1.76
40924089--40924460	59	6.4	59	88	3	511	35	4	28	31	1.77
40924592--40924930	162	2.1	162	85	2	448	43	12	17	25	1.84
40925563--40925593	16	1.9	16	100	0	62	38	25	22	12	1.90
40926359--40926397	20	2.0	20	85	10	53	15	12	48	23	1.79
40926626--40926724	6	16.2	6	75	12	85	47	1	3	48	1.24
40926660--40926730	17	4.4	16	81	13	74	54	1	2	40	1.23
40926659--40926718	31	1.9	31	93	0	102	55	1	1	41	1.20
40926699--40926752	28	1.9	28	84	0	72	55	5	1	37	1.34
40938679--40938740	28	2.3	27	81	10	72	40	3	8	48	1.49
40938687--40938741	28	1.9	29	88	3	85	41	3	7	47	1.49
40938791--40938839	24	2.0	24	84	7	64	51	8	6	34	1.57
40944040--40944090	6	8.5	6	100	0	102	33	0	15	50	1.44
40944382--40944435	6	9.0	6	91	0	81	33	5	16	44	1.71
40947861--40947943	29	2.9	28	75	10	69	40	18	8	32	1.80
40955038--40955085	24	2.0	24	91	0	78	18	27	2	52	1.57
40958163--40958200	15	2.5	16	83	12	53	26	5	2	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40967752--40967783	16	2.0	16	100	0	64	43	12	12	31	1.80
40972466--40972497	16	2.0	16	100	0	64	43	12	12	31	1.80
40977787--40977822	16	2.2	16	90	9	56	13	8	22	55	1.65
40980194--40980267	31	2.4	30	78	8	78	28	4	4	63	1.31
40982327--40982880	95	5.9	95	83	3	701	20	12	16	50	1.77
40982331--40982880	96	5.8	94	83	5	686	21	12	16	49	1.78
40987660--40987746	23	3.8	24	76	10	67	50	2	0	47	1.13
40992440--40992481	21	2.0	22	85	4	59	40	0	2	57	1.12
40999073--40999139	35	1.9	35	84	6	91	38	1	7	52	1.39
41010652--41010680	2	15.0	2	92	7	51	0	48	0	51	1.00
41017285--41017328	22	2.0	21	82	4	52	52	15	9	22	1.71
41023487--41023534	20	2.3	20	85	7	60	33	2	2	62	1.18
41031595--41031638	10	4.4	9	81	18	52	84	0	15	0	0.63
41031605--41031638	10	3.3	11	88	12	54	85	0	14	0	0.60
41031594--41031638	20	2.2	21	88	4	65	84	0	15	0	0.62
41032891--41033048	50	3.1	50	70	10	142	39	20	25	13	1.90
41032891--41033093	100	2.0	101	87	2	293	38	20	26	14	1.91
41033160--41033417	52	5.4	51	65	27	174	32	14	17	35	1.90
41033221--41033366	40	3.3	40	70	23	132	34	12	17	35	1.88
41033158--41033741	92	6.4	91	89	2	762	33	15	17	33	1.92
41033153--41033746	274	2.2	275	85	3	777	33	15	17	32	1.92
41034002--41034083	11	7.5	11	76	14	73	46	0	1	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41034001--41034077	6	13.8	6	74	15	76	45	0	1	53	1.08
41034001--41034083	17	5.1	17	84	7	109	45	0	1	53	1.08
41034734--41034777	3	14.7	3	90	0	70	63	2	2	31	1.19
41035173--41035215	11	4.0	10	82	14	50	72	2	20	4	1.14
41035167--41035214	22	2.2	22	88	0	69	75	2	16	6	1.11
41035180--41035212	15	2.2	15	89	10	50	72	0	21	6	1.05
41035904--41036086	30	6.1	30	82	3	208	38	19	3	38	1.68
41035904--41036077	60	2.9	60	85	0	258	39	20	2	37	1.67
41035925--41036114	90	2.1	87	83	2	236	38	19	2	38	1.66
41036394--41036423	14	2.1	15	93	6	53	36	6	6	50	1.55
41039437--41039481	22	2.1	22	84	12	58	44	0	4	51	1.21
41050135--41050176	20	2.1	20	100	0	84	26	30	28	14	1.95
41050594--41050651	31	1.9	31	89	3	91	39	3	1	55	1.27
41053854--41053896	10	4.3	10	78	0	50	34	2	0	62	1.08
41053856--41053893	20	1.9	20	100	0	76	39	2	0	57	1.12
41055085--41055111	12	2.2	12	100	0	54	37	7	7	48	1.59
41057882--41057910	14	2.1	14	100	0	58	51	6	13	27	1.66
41059126--41059182	29	2.0	28	83	10	71	40	8	10	40	1.71
41066974--41067007	3	11.3	3	93	0	59	0	0	38	61	0.96
41086997--41087073	23	3.2	24	75	7	84	32	14	14	38	1.86
41087995--41088020	3	8.7	3	100	0	52	0	34	0	65	0.93
41088933--41088988	21	2.7	21	70	8	60	55	3	7	33	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41092845--41092882	5	7.4	5	88	11	51	2	18	0	78	0.86
41093797--41093830	17	2.0	17	100	0	68	47	23	11	17	1.81
41093930--41094016	44	2.0	43	97	2	165	36	27	6	28	1.83
41099400--41099467	30	2.3	29	82	14	77	36	0	2	60	1.12
41102976--41103051	40	1.9	40	97	2	145	34	25	21	19	1.96
41103032--41103175	41	3.5	41	80	2	155	31	25	21	20	1.98
41102992--41103176	41	4.5	41	76	8	146	32	25	21	20	1.97
41104431--41104469	19	2.1	19	95	0	69	20	30	25	23	1.98
41105936--41106176	76	3.2	75	80	2	250	38	21	19	20	1.93
41137163--41137198	12	3.0	12	91	0	54	27	11	16	44	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132