genome.fa.s12.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  110  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33389939--33390006	24	2.9	24	84	2	84	27	13	8	50	1.71
33404367--33404729	194	1.9	195	84	4	500	30	17	26	25	1.97
33405560--33405615	21	2.6	22	78	13	64	30	17	25	26	1.97
33409998--33410051	21	2.6	21	81	0	72	25	12	27	33	1.93
33411056--33411116	25	2.4	25	80	2	77	55	14	13	16	1.69
33412062--33412111	26	1.9	27	88	8	77	54	8	0	38	1.30
33413986--33414024	11	3.4	12	86	10	55	56	0	2	41	1.13
33415676--33415742	10	6.3	11	72	10	50	35	0	1	62	1.04
33415684--33415742	20	2.9	20	73	9	57	37	0	1	61	1.07
33415695--33415748	17	3.4	17	65	19	53	33	0	1	64	1.04
33415698--33415756	30	2.0	30	100	0	118	33	0	1	64	1.04
33425882--33425913	10	3.2	10	95	0	55	9	0	3	87	0.64
33454050--33454089	15	2.6	16	80	8	55	47	0	2	50	1.14
33459123--33459184	23	2.6	25	77	15	67	54	0	1	43	1.09
33462137--33462206	20	3.5	20	78	0	68	28	30	11	30	1.92
33468942--33468994	24	2.3	23	83	6	63	56	0	0	43	0.99
33471344--33471405	31	2.0	31	81	12	74	41	4	9	43	1.59
33474835--33474868	17	2.0	17	100	0	68	29	41	5	23	1.78
33481386--33481544	58	2.8	56	80	4	174	35	7	17	39	1.78
33481605--33481743	69	2.0	69	81	2	163	15	17	29	37	1.91
33484369--33484406	19	2.0	19	100	0	76	42	5	26	26	1.76
33488868--33488898	16	2.0	15	93	6	53	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33512907--33513102	59	3.3	56	72	10	158	36	5	29	28	1.79
33513076--33513415	30	11.3	29	76	8	238	37	4	22	36	1.73
33513076--33513401	120	2.7	119	83	3	404	37	3	21	36	1.73
33513079--33513401	60	5.4	60	82	3	337	37	4	21	36	1.73
33513125--33513415	90	3.2	90	75	5	284	37	4	21	36	1.73
33515010--33515358	173	2.0	173	98	0	671	18	12	37	31	1.89
33515369--33515430	29	2.1	28	82	11	72	16	14	29	40	1.88
33515472--33515515	17	2.6	18	85	10	65	59	4	0	36	1.18
33515762--33515927	91	1.8	91	98	0	323	31	17	16	34	1.92
33515853--33517919	152	13.5	152	88	6	2982	33	17	14	34	1.90
33516738--33516859	33	3.5	33	74	23	124	31	18	13	35	1.91
33516838--33517004	90	1.8	91	89	2	264	32	15	15	36	1.89
33515761--33517905	537	4.0	541	92	3	3351	33	17	14	34	1.90
33517275--33517389	33	3.3	33	73	23	119	31	19	12	37	1.88
33517375--33517541	90	1.8	92	88	2	257	32	14	15	37	1.88
33515853--33517919	76	27.1	76	81	8	1841	33	17	14	34	1.90
33517839--33518003	91	1.8	88	92	3	276	33	18	12	34	1.89
33519699--33519759	8	7.6	8	85	5	52	3	13	1	81	0.88
33519699--33519764	16	4.2	15	78	7	60	4	12	1	81	0.90
33519699--33519769	31	2.2	32	85	5	90	4	11	2	81	0.93
33525024--33525277	60	4.2	60	81	5	273	36	3	22	37	1.73
33525030--33525289	90	2.9	87	77	9	254	35	4	22	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33525030--33525276	30	8.3	30	77	4	203	36	4	21	38	1.73
33527074--33527130	29	2.0	28	83	13	71	17	15	26	40	1.90
33527165--33527198	16	2.1	17	88	5	52	52	5	2	38	1.41
33547801--33547849	16	2.9	18	77	20	52	51	0	0	48	1.00
33554281--33554326	23	2.0	23	100	0	92	21	13	30	34	1.91
33555016--33555064	16	2.9	18	77	20	52	51	0	0	48	1.00
33558095--33558145	24	2.1	24	82	10	59	37	5	0	56	1.23
33558119--33558264	58	2.5	58	81	8	172	43	1	2	52	1.21
33574165--33574322	30	5.3	30	89	3	237	11	29	24	34	1.90
33587988--33588021	4	8.5	4	93	0	59	23	0	26	50	1.50
33587793--33588491	229	3.0	229	93	4	1245	33	7	17	42	1.76
33588217--33588262	4	11.5	4	95	0	83	23	0	26	50	1.50
33587793--33588503	241	3.0	240	96	2	1291	33	7	17	42	1.76
33588458--33588504	4	11.8	4	100	0	94	25	0	23	51	1.49
33588867--33588915	4	12.2	4	79	16	57	0	22	2	75	0.90
33588866--33588919	23	2.4	22	84	12	65	0	22	1	75	0.89
33590390--33590418	14	2.0	15	93	6	51	55	0	0	44	0.99
33610043--33610108	28	2.3	29	84	2	80	39	24	25	10	1.87
33613880--33613918	5	7.8	5	100	0	78	20	58	0	20	1.39
33615709--33615760	19	2.7	19	82	8	61	57	5	1	34	1.33
33619967--33620036	31	2.3	31	85	5	97	48	11	7	32	1.66
33626033--33626087	23	2.3	25	72	15	62	41	5	1	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33626044--33626095	21	2.3	23	83	6	72	53	5	1	38	1.36
33626290--33626352	30	2.1	31	90	3	101	53	0	0	46	1.00
33627571--33627649	29	2.8	27	77	12	70	34	2	1	62	1.17
33627593--33627633	21	1.9	22	90	5	66	39	0	0	60	0.96
33627602--33627651	21	2.6	19	84	9	57	40	2	0	58	1.10
33627635--33627680	22	2.0	24	87	12	69	52	0	0	47	1.00
33628200--33628234	18	1.9	18	88	0	52	17	8	8	65	1.44
33628937--33628998	22	2.8	22	85	4	90	29	22	29	19	1.98
33633374--33633559	51	3.6	51	88	1	264	33	24	12	29	1.93
33633374--33633589	51	4.2	51	87	1	261	31	24	13	30	1.93
33640639--33640787	51	2.9	52	83	6	160	34	21	15	28	1.94
33640692--33640821	51	2.5	51	88	0	188	32	23	15	28	1.95
33642215--33642273	21	2.8	20	80	7	73	28	13	23	33	1.93
33644320--33644365	23	1.9	25	86	8	69	43	0	10	45	1.39
33647974--33648037	28	2.2	29	83	8	76	26	6	7	59	1.49
33648452--33648534	41	2.0	41	97	0	157	28	25	14	31	1.95
33653151--33653175	13	1.9	13	100	0	50	40	0	8	52	1.31
33653160--33653270	17	6.3	17	81	5	123	41	0	5	52	1.30
33653160--33653270	35	3.1	34	81	8	125	41	0	5	52	1.30
33653174--33653271	6	16.7	6	74	11	78	41	1	5	52	1.30
33653160--33653278	18	6.8	17	81	5	112	42	0	5	51	1.29
33655103--33655360	87	2.9	88	82	5	229	35	21	4	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33655134--33655360	59	3.8	59	83	6	230	35	20	3	40	1.70
33655134--33655360	30	7.7	29	81	8	212	35	20	3	40	1.70
33659826--33659864	20	2.0	20	89	0	60	76	0	20	2	0.90
33659827--33659875	17	2.8	17	78	6	53	77	0	20	2	0.87
33660719--33660762	7	6.4	7	85	15	56	86	4	9	0	0.70
33662882--33663221	29	11.7	30	80	7	282	36	3	23	36	1.73
33662888--33663221	59	5.7	59	79	6	335	36	3	22	36	1.73
33662884--33663233	87	4.0	86	81	8	381	36	3	23	36	1.73
33664329--33664374	23	2.0	22	91	4	74	47	0	0	52	1.00
33664951--33664999	13	3.5	14	75	8	55	22	6	32	38	1.79
33664951--33665011	28	2.3	27	88	11	90	22	6	31	39	1.80
33665068--33665165	6	16.7	6	75	11	87	53	4	1	41	1.27
33665069--33665179	17	6.3	17	83	5	132	53	4	0	41	1.27
33665075--33665165	11	7.9	11	72	16	69	53	3	1	41	1.24
33665061--33665179	18	6.8	17	83	5	121	52	4	0	42	1.26
33665164--33665188	13	1.9	13	100	0	50	52	8	0	40	1.31
33665069--33665179	35	3.1	34	80	11	125	53	4	0	41	1.27
33665813--33665894	39	2.1	39	90	0	128	24	14	32	28	1.94
33666188--33666443	49	5.2	49	83	3	291	12	25	21	39	1.89
33669506--33669551	23	2.0	23	91	0	74	60	0	2	36	1.09
33669508--33669557	23	2.2	23	82	3	66	66	0	2	32	1.03
33669508--33669563	23	2.5	23	79	2	60	66	0	1	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33678295--33678334	19	2.1	19	85	0	53	60	0	2	37	1.11
33678874--33678911	17	2.3	17	90	4	60	76	0	0	23	0.79
33684627--33684651	11	2.3	11	100	0	50	32	32	8	28	1.86
33686054--33686091	3	12.3	3	88	5	58	65	0	0	34	0.93
33687512--33687542	16	1.9	16	93	0	53	83	0	16	0	0.64
33687516--33687545	14	2.1	14	93	0	51	83	0	16	0	0.65
33688034--33688060	3	9.0	3	100	0	54	0	33	0	66	0.92
33722557--33723683	619	1.8	621	96	0	2078	40	15	7	36	1.74
33725107--33725142	3	12.0	3	100	0	72	0	33	0	66	0.92
33726112--33726173	31	2.0	31	100	0	124	48	25	6	19	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132