genome.fa.s12.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  26  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7305037--7305078	19	2.2	19	91	0	66	14	19	16	50	1.79
7307313--7307345	15	2.2	15	94	0	57	21	30	18	30	1.97
7307410--7307451	17	2.5	17	92	3	68	11	30	9	47	1.72
7309200--7309238	17	2.3	17	90	0	60	46	25	12	15	1.81
7308255--7310426	727	3.0	727	97	0	4083	34	20	12	32	1.90
7315033--7315336	30	10.3	30	79	9	231	36	27	3	32	1.74
7315074--7315290	59	3.7	58	81	9	235	33	30	3	32	1.74
7323052--7323084	16	2.0	17	88	5	50	63	0	36	0	0.95
7323209--7323242	17	1.9	18	88	5	52	20	17	0	61	1.34
7324911--7324950	19	2.2	18	86	4	53	42	2	0	55	1.13
7324911--7324950	9	4.3	9	87	6	53	42	2	0	55	1.13
7328680--7328735	17	3.3	17	73	26	64	19	39	1	39	1.62
7329306--7329505	55	3.5	55	80	5	195	50	13	7	29	1.69
7343291--7343656	67	5.5	67	81	3	360	39	14	21	24	1.91
7343291--7343659	134	2.8	133	80	4	409	39	14	21	24	1.91
7345617--7345662	24	1.9	23	86	8	65	56	6	4	32	1.45
7350523--7350633	29	3.8	29	81	9	120	32	1	24	41	1.65
7350490--7350654	29	5.6	28	72	18	81	33	3	26	36	1.72
7350504--7350655	58	2.6	57	78	13	166	33	2	26	37	1.70
7350611--7350736	30	4.2	30	72	4	103	40	3	24	31	1.71
7350587--7350722	30	4.6	30	71	6	100	40	2	22	34	1.67
7350887--7350959	28	2.6	29	78	6	96	27	2	28	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7350962--7350989	14	2.0	14	100	0	56	50	7	0	42	1.30
7350976--7351079	30	3.5	30	85	2	138	40	1	22	35	1.65
7352099--7352144	14	3.4	14	85	8	60	36	0	0	63	0.95
7352779--7352841	11	5.5	11	78	3	63	52	1	0	46	1.10
7352779--7352841	6	11.0	6	76	10	69	52	1	0	46	1.10
7352793--7352859	17	4.1	17	88	5	102	58	1	0	40	1.07
7352793--7352859	33	2.0	33	88	5	100	58	1	0	40	1.07
7353265--7353847	39	15.1	39	75	5	385	25	20	31	22	1.98
7353640--7353884	78	3.1	78	81	2	267	24	19	31	24	1.98
7354865--7354937	34	2.1	35	92	2	121	21	21	9	46	1.80
7366156--7366336	29	6.2	29	80	6	186	32	2	27	38	1.69
7366133--7366317	59	3.2	58	83	6	207	30	1	26	41	1.65
7366133--7366317	29	6.3	30	80	5	166	30	1	26	41	1.65
7366172--7366368	59	3.3	59	81	9	174	34	2	26	37	1.68
7366274--7366354	30	2.8	28	78	12	83	41	2	19	35	1.65
7367372--7367414	3	14.0	3	90	4	68	34	0	2	62	1.08
7367404--7367436	14	2.4	14	94	0	57	39	0	0	60	0.97
7367372--7367434	19	3.4	18	81	12	58	36	0	1	61	1.05
7367823--7367902	17	4.7	17	74	0	79	36	2	6	55	1.39
7367827--7367891	34	1.9	34	90	0	103	29	3	7	60	1.40
7368571--7368640	31	2.2	31	87	2	95	54	5	4	35	1.44
7369686--7369886	60	3.3	60	77	10	146	37	21	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7369724--7369999	30	9.2	30	82	6	163	36	21	2	40	1.65
7369747--7370029	90	3.1	88	84	7	304	37	22	1	38	1.65
7369777--7370058	60	4.7	60	82	6	306	37	23	1	37	1.62
7369806--7370064	30	8.7	29	84	5	195	36	25	1	36	1.65
7369777--7370037	90	2.9	89	86	3	337	37	23	1	37	1.63
7370190--7370384	29	6.8	28	69	14	94	31	28	6	32	1.83
7370024--7370407	144	2.6	146	81	8	419	30	27	8	34	1.86
7370216--7370379	60	2.8	57	74	14	145	31	27	6	34	1.83
7371400--7371425	11	2.4	11	100	0	52	15	11	23	50	1.76
7376828--7377041	50	4.2	50	71	8	148	37	22	26	13	1.91
7376828--7377147	101	3.2	99	83	2	372	37	21	25	14	1.92
7376877--7377042	51	3.3	51	70	11	160	37	20	27	14	1.91
7377240--7377414	92	1.9	91	84	5	237	32	18	17	32	1.94
7377894--7377966	17	4.2	17	75	3	74	36	2	5	54	1.38
7377889--7377955	35	1.9	35	93	0	116	29	2	8	58	1.44
7379809--7380065	30	8.6	30	79	8	186	39	20	1	37	1.64
7379784--7380065	60	4.7	61	77	5	215	38	21	2	37	1.67
7379828--7380096	90	3.0	90	79	7	259	39	22	1	36	1.65
7379836--7380112	30	9.4	29	76	12	185	39	22	1	36	1.65
7379895--7380142	30	8.5	29	78	10	170	38	24	2	34	1.69
7380050--7380160	57	1.9	57	80	12	129	33	30	5	30	1.80
7380079--7380438	147	2.5	145	80	8	399	30	26	7	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7382080--7382220	57	2.4	59	76	8	155	13	14	31	40	1.84
7386771--7386842	32	2.2	32	87	0	108	36	2	29	31	1.72
7386773--7386833	16	3.8	16	91	0	104	39	0	27	32	1.57
7386824--7386912	44	2.0	44	86	8	126	29	5	28	37	1.80
7386999--7387142	58	2.5	57	86	6	202	52	2	0	45	1.17
7387004--7387174	58	3.0	54	78	16	150	53	1	1	43	1.21
7392101--7392149	22	2.5	18	76	20	53	48	4	0	46	1.20
7392106--7392156	22	2.5	20	79	17	59	49	3	0	47	1.20
7395702--7395748	20	2.3	20	75	7	51	57	8	2	31	1.41
7404970--7404999	16	1.9	16	93	6	53	60	3	6	30	1.39
7405410--7405453	17	2.8	16	83	13	56	63	2	0	34	1.07
7409434--7409549	21	5.3	21	75	9	106	33	4	2	59	1.31
7409451--7409551	46	2.2	44	83	6	130	35	3	1	58	1.28
7411581--7411803	57	3.8	58	82	10	258	35	13	19	32	1.90
7411581--7411803	114	1.9	120	86	5	323	35	13	19	32	1.90
7411552--7411817	114	2.3	114	81	7	302	34	14	21	29	1.93
7414694--7414768	35	2.1	35	100	0	150	30	8	21	40	1.82
7417573--7417643	37	1.9	37	85	0	97	18	15	2	63	1.43
7418906--7419053	41	3.5	41	87	4	199	37	11	22	28	1.89
7418906--7419059	82	1.8	85	86	4	224	38	11	22	27	1.88
7419078--7419174	40	2.4	40	89	0	149	41	9	25	23	1.84
7420313--7420361	24	2.0	24	100	0	98	36	20	16	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7420897--7420973	26	2.8	27	75	15	77	61	0	0	38	0.96
7420922--7420959	16	2.4	17	82	13	53	60	0	0	39	0.97
7435676--7435746	8	7.6	9	77	17	65	42	0	1	56	1.08
7435665--7435740	39	1.9	40	91	2	127	38	0	2	59	1.12
7435670--7435746	11	7.9	10	77	15	65	40	0	2	57	1.13
7437001--7437058	20	2.7	21	72	15	55	43	24	20	12	1.86
7438541--7438593	21	2.7	20	77	8	56	50	1	1	45	1.23
7444285--7444519	30	7.8	30	83	7	271	42	3	18	35	1.67
7448616--7448659	21	2.1	21	83	8	54	52	2	2	43	1.26
7448609--7448659	21	2.6	19	74	14	50	49	3	1	45	1.32
7450209--7450291	6	14.2	6	75	14	75	42	2	0	55	1.13
7450210--7450291	17	5.1	17	76	21	70	42	2	0	54	1.13
7450215--7450268	27	2.0	27	92	0	90	40	0	0	59	0.98
7452197--7452546	30	11.6	30	79	10	333	37	22	2	37	1.69
7452198--7452540	60	5.7	59	81	6	377	37	21	2	38	1.68
7452198--7452546	90	3.9	91	86	4	467	37	22	2	37	1.69
7452518--7452629	60	1.9	59	81	9	138	28	26	7	37	1.83
7452728--7452786	30	1.9	30	83	10	75	22	16	8	52	1.70
7460764--7460843	33	2.4	34	81	6	103	41	2	3	52	1.33
7463969--7464010	13	3.1	13	80	12	57	54	7	16	21	1.65
7464068--7464109	22	1.9	22	85	9	59	35	16	11	35	1.86
7476365--7476405	19	2.1	20	86	4	57	41	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7476661--7476708	15	3.6	15	69	30	54	41	4	0	54	1.20
7476656--7476708	24	2.2	24	100	0	106	41	3	0	54	1.18
7481147--7481182	15	2.4	15	95	0	63	33	2	0	63	1.08
7481142--7481181	16	2.5	15	84	8	53	30	2	0	67	1.04
7488494--7488706	110	1.9	109	81	2	257	38	13	2	45	1.58
7506386--7506414	5	5.8	5	100	0	58	20	0	0	79	0.74
7520648--7520691	20	2.2	20	84	12	54	50	2	0	47	1.13
7522690--7522737	20	2.4	18	78	18	51	50	0	2	47	1.12
7522728--7522771	20	2.2	20	88	8	63	45	0	0	54	0.99
7522699--7522753	27	2.0	29	89	7	87	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132