genome.fa.s12.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  113  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34288985--34289126	31	4.5	31	94	4	232	38	2	0	57	1.18
34291155--34291615	30	15.4	30	82	6	490	38	22	2	35	1.69
34294612--34295425	337	2.4	342	89	4	1242	29	8	25	36	1.86
34299842--34299916	30	2.5	30	84	2	96	24	1	14	60	1.43
34299987--34300045	15	3.6	17	77	15	54	64	1	1	32	1.13
34299941--34300047	9	12.4	9	68	16	50	60	0	3	34	1.21
34306606--34306892	143	2.0	143	95	0	511	42	8	10	38	1.70
34307366--34307397	15	2.0	17	88	11	50	50	6	9	34	1.60
34310675--34310924	58	4.3	58	82	6	301	35	3	28	33	1.73
34310786--34310924	30	4.8	29	68	19	92	33	2	30	33	1.73
34311075--34311385	161	1.9	162	92	0	525	41	13	18	26	1.87
34311844--34311912	12	6.0	12	86	6	81	2	23	0	73	0.96
34312153--34312226	3	24.7	3	84	10	98	31	0	1	67	0.99
34313104--34313175	6	12.0	6	73	15	60	48	0	2	48	1.16
34313112--34313175	17	4.0	16	78	10	69	50	0	3	46	1.17
34313118--34313182	31	2.1	32	85	8	89	50	1	3	44	1.26
34313474--34314114	76	8.7	76	87	5	906	31	19	15	33	1.93
34313766--34314114	151	2.3	152	89	1	567	32	18	15	33	1.93
34326200--34326456	58	4.4	59	84	4	342	33	3	30	31	1.75
34326237--34326510	30	9.4	29	70	16	124	33	3	28	34	1.75
34326584--34327080	163	3.1	162	91	0	780	42	12	18	26	1.86
34327542--34327608	14	5.1	14	89	5	81	1	20	0	77	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34327846--34327903	3	19.7	3	78	3	64	36	0	0	63	0.94
34327856--34327910	6	9.7	6	76	11	62	40	0	0	60	0.97
34327852--34327903	12	4.4	12	95	4	97	38	0	0	61	0.96
34328782--34328889	6	18.2	6	71	18	75	48	1	2	47	1.27
34328782--34328889	11	9.1	12	71	19	75	48	1	2	47	1.27
34328797--34328843	17	2.8	17	96	0	85	48	0	6	44	1.28
34328820--34328892	34	2.1	34	84	2	92	53	2	1	42	1.23
34328818--34328864	24	1.9	25	95	4	87	51	0	2	46	1.13
34328793--34328869	41	1.9	42	86	7	115	51	0	3	44	1.19
34330754--34330834	31	2.6	31	86	0	99	45	11	22	20	1.82
34332412--34332472	31	2.0	31	90	0	95	44	6	22	26	1.77
34334024--34334114	31	2.9	31	85	0	110	45	12	19	23	1.84
34341079--34341168	31	2.9	31	83	0	99	44	12	20	23	1.84
34341515--34341565	18	2.7	19	80	14	61	60	1	0	37	1.08
34342134--34342208	29	2.5	30	82	8	82	28	14	9	48	1.75
34342160--34342255	31	3.1	31	87	1	131	29	14	12	43	1.82
34343428--34343483	28	2.0	27	82	3	67	46	10	17	25	1.80
34343804--34343853	9	5.6	9	77	17	50	66	0	2	32	1.03
34346151--34346223	30	2.4	30	77	13	76	39	1	6	52	1.37
34346466--34346512	24	2.0	24	91	0	76	21	0	8	70	1.14
34347345--34347382	3	12.7	3	100	0	76	31	0	0	68	0.90
34348867--34348897	15	2.1	15	93	0	53	77	0	3	19	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34353119--34353187	27	2.7	25	84	4	75	53	1	0	44	1.09
34353162--34353307	62	2.3	62	85	3	177	44	1	1	52	1.18
34353195--34353325	63	2.1	62	85	1	172	42	4	1	51	1.31
34354806--34354839	6	5.7	6	100	0	68	50	32	17	0	1.47
34379397--34379422	13	2.0	13	100	0	52	23	7	23	46	1.78
34381203--34381229	2	13.5	2	100	0	54	51	0	48	0	1.00
34390014--34390044	16	1.9	16	93	0	53	41	9	0	48	1.36
34393606--34393638	14	2.3	15	90	10	52	54	3	0	42	1.15
34401693--34402113	139	3.0	138	94	1	734	23	13	19	42	1.87
34402937--34402985	25	2.0	25	100	0	98	44	6	20	28	1.75
34406670--34406808	26	4.8	29	72	18	103	49	0	0	49	1.05
34406638--34406808	58	2.9	58	86	9	224	47	1	0	50	1.11
34406878--34406982	46	2.5	44	82	13	114	37	25	5	31	1.80
34406889--34406982	44	2.1	44	86	7	127	37	26	5	30	1.79
34406964--34407018	16	3.4	16	87	0	83	27	27	5	40	1.78
34410827--34410870	22	2.0	21	86	4	61	54	4	0	40	1.21
34411506--34411551	22	2.0	22	87	8	65	52	2	0	45	1.13
34413514--34413541	7	4.0	7	100	0	56	28	14	0	57	1.38
34420436--34420467	15	2.1	16	94	5	57	28	12	6	53	1.62
34426113--34426150	20	1.9	20	88	0	58	44	2	2	50	1.30
34429302--34429363	16	3.9	16	89	0	97	41	6	24	27	1.79
34429543--34429694	57	2.6	58	82	6	191	53	3	0	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34439567--34439597	2	15.5	2	100	0	62	48	0	0	51	1.00
34449732--34449770	6	6.5	6	87	0	51	46	0	30	23	1.53
34451309--34451345	17	2.2	17	95	0	65	18	10	37	32	1.86
34455882--34455928	16	2.9	16	78	12	60	38	0	27	34	1.57
34455890--34455974	16	5.4	16	67	20	54	35	2	23	38	1.68
34455907--34456000	46	2.1	44	84	11	120	34	2	22	41	1.66
34456659--34456794	61	2.2	61	88	1	182	50	2	3	44	1.32
34456730--34456791	24	2.7	23	78	7	72	53	3	0	43	1.17
34456790--34456889	30	3.4	30	71	12	100	39	1	2	58	1.16
34457670--34457721	25	2.1	25	100	0	104	40	19	7	32	1.80
34466059--34466091	15	2.1	16	88	5	50	60	0	3	36	1.12
34467170--34467277	40	2.7	41	83	1	128	34	18	25	22	1.96
34469528--34469581	20	2.7	20	88	0	72	31	33	5	29	1.80
34472476--34472709	42	5.3	43	75	10	202	26	17	27	28	1.98
34472586--34472687	52	2.0	51	88	1	150	28	20	27	23	1.99
34478314--34478342	6	4.8	6	100	0	58	31	0	0	68	0.89
34502839--34502880	21	2.0	22	85	4	59	59	9	0	30	1.29
34507776--34507812	19	1.9	19	94	0	65	32	0	2	64	1.07
34517725--34517782	30	1.9	30	100	0	116	62	13	10	13	1.55
34520536--34520595	26	2.3	26	74	2	68	28	25	6	40	1.80
34526874--34526943	34	2.1	34	97	0	131	32	20	2	44	1.66
34531884--34531932	24	2.0	24	100	0	98	34	4	32	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34534897--34535045	57	2.6	57	85	6	187	36	22	2	38	1.69
34550149--34550199	21	2.4	21	83	0	66	45	13	0	41	1.44
34553509--34554218	241	2.9	242	82	5	772	41	11	12	34	1.79
34560506--34560551	18	2.6	19	73	13	53	39	0	0	60	0.97
34566665--34566706	21	2.0	21	90	4	66	50	2	0	47	1.14
34571602--34571755	41	3.8	41	78	1	139	18	20	25	35	1.95
34572585--34572624	20	2.0	20	90	4	64	65	2	5	27	1.27
34573945--34573990	24	1.9	23	86	8	65	54	6	4	34	1.46
34589915--34589981	29	2.3	29	79	7	73	47	11	2	37	1.56
34590175--34590225	26	2.0	26	88	3	77	35	0	1	62	1.06
34590866--34590891	5	5.2	5	100	0	52	19	38	0	42	1.51
34597758--34597806	20	2.5	20	93	0	80	59	2	2	36	1.21
34598025--34598157	41	3.3	40	83	12	143	39	4	0	54	1.26
34598048--34598154	21	5.2	20	73	11	92	36	4	0	57	1.26
34598046--34598154	10	10.5	10	66	14	51	36	4	0	57	1.25
34598100--34598164	21	3.2	20	73	18	62	36	6	1	55	1.34
34600173--34600202	15	1.9	16	93	6	53	16	0	10	73	1.09
34610473--34610528	21	2.7	21	97	0	103	30	14	21	33	1.93
34612236--34612282	22	2.2	21	84	3	58	53	2	0	44	1.12
34612713--34612809	45	2.1	48	84	9	130	62	5	0	31	1.17
34614688--34614962	138	2.0	138	93	0	469	30	25	16	28	1.96
34616112--34616153	21	2.0	21	85	0	57	21	19	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34617982--34618096	46	2.6	47	79	12	125	32	5	12	50	1.62
34618080--34618109	13	2.3	13	94	0	51	33	0	16	50	1.46
34627902--34627972	35	2.0	35	94	0	124	18	39	14	28	1.89
34648717--34648754	20	1.9	20	88	0	58	42	18	10	28	1.83
34650645--34651117	237	2.0	237	96	0	865	31	19	18	30	1.96
34664518--34665214	236	3.0	236	95	0	1227	41	13	19	25	1.88
34665375--34665408	17	2.0	17	94	0	59	11	8	17	61	1.54
34670157--34670181	4	6.2	4	100	0	50	76	0	24	0	0.80
34675399--34675429	12	2.6	12	94	0	53	41	0	0	58	0.98
34681441--34681523	28	2.8	31	71	15	86	36	27	0	36	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132