genome.fa.s12.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  47  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12913896--12914383	59	8.3	58	79	8	413	33	28	2	35	1.72
12913885--12914380	234	2.1	236	86	4	689	34	28	3	34	1.73
12936404--12936469	29	2.3	29	78	5	71	27	10	28	33	1.90
12936423--12936645	59	3.8	60	78	10	176	34	5	26	33	1.79
12936423--12936526	29	3.6	29	72	19	90	35	7	25	31	1.84
12936511--12936689	87	2.0	89	87	4	256	34	5	26	34	1.78
12936511--12936678	58	2.9	59	83	8	202	33	3	26	36	1.74
12936511--12936697	29	6.4	29	77	6	164	34	4	25	35	1.77
12938376--12938419	17	2.6	18	86	13	67	59	4	0	36	1.18
12938359--12938404	23	2.0	24	86	4	67	54	4	2	39	1.32
12938356--12938419	6	11.0	6	72	12	53	54	3	1	40	1.25
12938939--12939060	49	2.5	49	95	0	217	25	24	15	34	1.95
12938995--12939769	204	3.8	206	91	2	1140	23	23	18	34	1.96
12942110--12942170	29	2.1	29	81	3	68	39	6	18	36	1.76
12944030--12944082	6	9.0	6	76	12	56	54	1	1	41	1.22
12944050--12944083	11	3.0	11	87	8	50	58	2	0	38	1.13
12950343--12950481	59	2.4	59	84	8	169	33	9	25	32	1.88
12950389--12950527	59	2.3	59	80	10	151	32	8	25	33	1.86
12950490--12950641	29	5.2	29	74	12	116	33	5	20	40	1.77
12950486--12950651	58	2.8	58	77	9	169	33	6	21	39	1.78
12952486--12952555	6	12.0	6	75	11	65	55	2	1	40	1.23
12952488--12952555	17	4.2	17	76	19	74	57	2	1	38	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12955620--12955681	3	20.7	3	88	0	79	59	3	1	35	1.23
12956806--12957230	29	14.5	29	71	16	272	34	27	3	35	1.72
12956807--12957230	59	7.2	58	80	6	394	34	27	3	35	1.72
12956807--12957230	117	3.6	118	84	2	541	34	27	3	35	1.72
12962856--12962986	49	2.7	49	77	4	140	16	27	16	38	1.91
12963564--12963616	6	9.0	6	76	12	56	54	1	1	41	1.22
12963584--12963617	11	3.0	11	87	8	50	58	2	0	38	1.13
12969970--12970109	59	2.4	59	84	7	185	32	10	25	30	1.90
12969970--12970062	29	3.2	28	73	14	89	33	9	23	33	1.87
12970118--12970269	29	5.2	29	75	12	125	34	5	19	40	1.76
12970114--12970269	58	2.7	58	79	9	167	33	5	20	39	1.76
12972116--12972185	6	12.0	6	75	11	65	55	2	1	40	1.23
12972118--12972185	17	4.2	17	76	19	74	57	2	1	38	1.23
12975043--12975074	11	2.8	12	95	4	57	40	0	0	59	0.97
12975025--12975068	17	2.6	18	85	10	65	38	0	2	59	1.10
12975264--12975322	3	19.7	3	87	0	64	57	3	3	35	1.32
12976494--12976918	59	7.2	58	80	4	372	33	27	3	36	1.73
12976493--12976918	176	2.4	174	82	5	473	33	26	3	35	1.73
12976494--12976918	117	3.6	117	82	3	491	33	27	3	36	1.73
12983591--12983762	29	5.9	29	74	9	152	31	3	26	38	1.73
12983591--12983767	59	3.0	60	81	8	177	31	3	27	37	1.75
12983599--12983781	29	6.2	30	73	8	119	31	4	25	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12985615--12985670	6	9.7	6	78	7	53	57	5	0	37	1.22
12985615--12985670	17	3.2	17	84	2	76	57	5	0	37	1.22
12992523--12993176	209	3.1	209	86	2	850	37	18	22	22	1.95
12993548--12993611	18	3.6	17	80	4	65	43	0	3	53	1.16
12993548--12993631	42	2.0	41	84	6	107	46	1	2	50	1.22
12993578--12993631	18	3.1	18	86	10	76	51	1	0	46	1.11
12993581--12993613	6	5.5	6	86	13	50	54	0	0	45	0.99
12993722--12993762	15	2.6	16	92	7	75	41	26	14	17	1.88
12994381--12994437	3	18.7	3	80	3	51	59	3	1	35	1.25
12994378--12994406	10	3.0	10	95	5	51	62	6	0	31	1.22
12995556--12996139	30	19.9	30	66	21	138	34	27	3	34	1.73
12995556--12996139	59	10.0	58	76	10	455	34	27	3	34	1.73
12995656--12996139	176	2.7	172	80	9	546	34	27	3	34	1.73
12995556--12996139	117	5.0	117	80	7	593	34	27	3	34	1.73
13045324--13045446	29	4.2	29	71	15	83	33	8	25	32	1.87
13045342--13045398	30	1.9	29	82	3	69	31	7	29	31	1.84
13045351--13045476	59	2.1	59	82	5	157	34	7	26	31	1.85
13045368--13045623	59	4.3	58	78	8	191	36	5	23	33	1.79
13045431--13045623	58	3.3	58	80	5	201	36	5	23	35	1.77
13045431--13045618	29	6.4	29	78	8	175	36	4	23	35	1.76
13047282--13047327	12	4.0	11	80	8	56	56	2	2	39	1.24
13047836--13048001	85	2.0	85	81	2	199	24	22	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13047626--13048626	204	4.9	205	88	2	1358	23	23	18	35	1.96
13049027--13049157	49	2.7	49	79	2	156	16	27	16	38	1.91
13049734--13049786	6	9.0	6	76	12	56	54	1	1	41	1.22
13049754--13049787	11	3.0	11	87	8	50	58	2	0	38	1.13
13056131--13056223	29	3.2	28	73	14	89	33	9	23	33	1.87
13056131--13056270	59	2.4	59	85	2	183	32	10	26	30	1.90
13056275--13056440	58	2.8	58	76	9	160	34	6	19	39	1.77
13056290--13056430	29	4.8	29	76	9	115	34	6	19	39	1.77
13058276--13058328	6	9.0	6	76	12	56	54	1	1	41	1.22
13058296--13058329	11	3.0	11	87	8	50	58	2	0	38	1.13
13061183--13061214	11	2.8	12	95	4	57	40	0	0	59	0.97
13061166--13061208	17	2.5	17	85	7	61	37	0	2	60	1.10
13061164--13061227	29	2.3	28	84	10	78	42	1	1	54	1.19
13061378--13061436	3	19.7	3	87	0	64	57	3	3	35	1.32
13062526--13062605	30	2.7	30	88	1	108	36	27	5	31	1.78
13062522--13063040	29	17.9	29	69	13	218	34	27	3	35	1.73
13062621--13063040	58	7.2	58	78	8	369	33	26	2	36	1.72
13062621--13063040	115	3.6	115	82	5	472	33	26	2	36	1.72
13062620--13063040	174	2.4	172	80	7	449	33	26	2	36	1.72
13069738--13069897	30	5.4	30	75	10	132	34	3	25	37	1.72
13069738--13069897	59	2.7	59	76	11	157	34	3	25	37	1.72
13073812--13074274	30	15.8	29	69	16	192	34	3	26	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13073813--13074070	117	2.2	118	84	4	326	35	3	28	33	1.73
13073813--13074180	59	6.3	58	76	8	305	35	3	26	33	1.74
13075623--13075662	17	2.4	17	87	8	55	57	2	0	40	1.12
13075617--13075648	11	2.8	12	95	4	57	59	0	0	40	0.97
13078506--13078575	6	12.0	6	73	11	65	40	1	2	55	1.23
13078506--13078575	17	4.4	17	77	18	78	40	1	2	55	1.23
13080421--13080572	29	5.2	29	76	10	123	41	19	5	34	1.74
13080437--13080591	29	5.2	29	74	12	109	38	23	4	33	1.75
13080544--13080609	32	2.0	32	85	8	89	31	28	6	33	1.82
13080581--13080720	59	2.4	60	85	7	189	30	25	10	32	1.90
13080628--13080720	29	3.2	28	73	14	89	33	23	9	33	1.87
13094650--13094681	11	2.8	12	95	4	57	40	0	0	59	0.97
13094632--13094675	17	2.6	18	82	10	56	36	0	4	59	1.18
13094660--13094701	17	2.4	17	84	4	57	45	2	0	52	1.13
13094630--13094698	29	2.4	28	85	7	86	40	1	2	55	1.24
13094816--13094878	3	20.7	3	85	3	72	58	4	1	34	1.29
13096007--13096467	30	15.6	30	67	20	104	33	27	4	35	1.76
13096080--13096574	59	8.5	57	77	9	421	33	28	3	34	1.73
13096080--13096573	29	17.0	27	69	18	237	33	28	3	34	1.73
13096008--13096568	118	4.8	119	79	8	521	33	27	3	35	1.75
13096089--13096568	177	2.7	173	80	9	539	33	27	3	35	1.74
13100300--13100349	23	2.2	23	85	0	64	24	20	12	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13100312--13100370	23	2.6	23	94	0	100	20	18	13	47	1.82
13108308--13108366	23	2.6	23	94	0	100	47	13	18	20	1.82
13108323--13108390	23	3.0	23	82	4	57	44	11	20	23	1.84
13112116--13112394	30	9.6	31	68	20	131	36	2	26	34	1.72
13112112--13112539	59	7.4	56	78	13	395	33	3	29	33	1.74
13112177--13112248	26	2.7	24	78	22	65	37	0	27	34	1.57
13112117--13112539	118	3.6	116	82	6	493	33	3	28	34	1.74
13112112--13112542	29	14.9	29	70	16	245	34	3	29	33	1.74
13112346--13112540	28	6.7	29	70	20	113	31	3	30	33	1.75
13112549--13112661	30	3.8	30	79	15	103	35	6	23	34	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132