genome.fa.s12.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  25  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7046613--7046641	6	4.8	6	100	0	58	31	34	17	17	1.93
7047346--7047372	9	3.0	9	100	0	54	33	0	0	66	0.92
7049918--7049947	15	2.0	15	100	0	60	46	6	20	26	1.75
7050655--7050700	20	2.4	19	82	10	58	39	6	6	47	1.55
7050697--7050730	2	17.0	2	100	0	68	50	0	0	50	1.00
7056486--7056520	18	1.9	18	88	0	52	48	2	2	45	1.32
7060365--7060393	6	4.8	6	100	0	58	13	0	0	86	0.58
7060442--7060477	17	2.1	17	94	0	63	27	11	8	52	1.65
7063308--7063346	15	2.4	18	80	20	50	17	15	5	61	1.51
7070226--7070281	21	2.6	22	83	5	62	46	28	0	25	1.53
7070227--7070294	21	3.2	20	75	19	59	47	27	0	25	1.53
7070191--7070297	35	3.1	35	70	12	85	42	30	0	26	1.62
7073334--7073504	87	2.0	87	91	2	281	31	10	11	46	1.74
7075297--7075492	98	2.0	98	94	0	347	45	10	16	28	1.79
7077721--7077820	47	2.3	43	80	17	118	60	2	1	37	1.15
7077751--7077816	22	2.8	24	79	11	73	59	3	0	37	1.13
7077774--7077804	14	2.1	15	94	5	55	58	3	0	38	1.15
7079647--7079775	61	2.1	62	86	4	181	45	3	1	49	1.27
7079878--7079973	46	2.1	45	81	11	117	39	18	5	36	1.73
7079952--7079989	16	2.4	16	91	8	60	28	23	5	42	1.76
7080768--7080881	48	2.4	48	80	2	131	42	10	19	28	1.84
7081076--7081110	17	2.1	17	100	0	70	37	5	17	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7082310--7082379	31	2.2	31	87	7	97	54	0	28	17	1.43
7084134--7084331	99	2.0	99	92	2	326	36	8	31	23	1.84
7084484--7084533	9	5.6	9	84	15	68	44	0	0	56	0.99
7084475--7084535	29	2.2	27	88	8	88	47	0	0	52	1.00
7084487--7084525	20	2.0	20	100	0	78	48	0	0	51	1.00
7084484--7084547	29	2.2	30	86	13	89	46	0	1	51	1.10
7091487--7091521	17	2.1	17	88	0	52	71	0	2	25	1.00
7092300--7092330	9	3.3	9	91	8	53	70	0	3	25	1.02
7095428--7095528	37	2.7	37	89	3	150	10	19	34	34	1.87
7102420--7102521	36	2.8	36	83	2	125	38	14	23	23	1.92
7104433--7104672	105	2.3	104	84	6	306	27	13	21	36	1.92
7104433--7104672	52	4.6	52	79	8	254	27	13	21	36	1.92
7112560--7112649	14	6.6	14	72	10	71	24	18	25	31	1.98
7112596--7112654	7	8.4	7	75	0	55	18	18	27	35	1.94
7112597--7112649	21	2.5	21	87	0	79	20	18	26	33	1.96
7114606--7114782	89	2.0	89	81	4	205	21	14	12	50	1.76
7114944--7115114	59	2.9	60	85	4	213	46	11	16	24	1.81
7136679--7136747	32	2.2	33	79	10	81	47	10	7	34	1.65
7137878--7137940	24	2.6	24	84	0	81	26	14	11	47	1.77
7139866--7139916	24	2.1	24	92	0	84	23	11	7	56	1.61
7139866--7139928	24	2.6	24	84	0	72	25	14	9	50	1.72
7144031--7144060	6	5.2	6	96	4	53	0	13	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7144024--7144065	12	3.8	11	84	9	50	2	14	0	83	0.75
7144035--7144067	16	2.0	17	88	5	50	3	12	0	84	0.72
7144024--7144086	23	2.7	23	82	4	65	7	12	1	77	1.05
7147122--7147165	3	14.7	3	100	0	88	65	0	0	34	0.93
7157810--7157835	7	3.7	7	100	0	52	38	0	0	61	0.96
7157839--7157872	10	3.5	10	88	8	52	70	2	0	26	1.01
7161186--7161229	18	2.3	20	80	11	56	29	0	9	61	1.27
7165825--7165884	28	2.1	30	87	6	88	60	1	6	31	1.33
7166268--7166319	17	2.9	17	78	13	52	30	5	0	63	1.18
7174715--7174788	31	2.4	30	78	10	78	31	1	4	63	1.21
7175438--7175531	44	2.1	46	84	7	122	29	4	29	36	1.77
7175619--7175706	26	3.4	25	74	10	95	51	1	1	46	1.15
7175628--7175773	53	2.6	56	86	7	201	52	0	0	46	1.05
7179181--7179219	21	1.9	19	85	10	51	43	0	2	53	1.14
7185339--7185364	2	13.0	2	100	0	52	50	0	0	50	1.00
7188796--7189008	106	2.0	106	99	0	417	31	9	17	41	1.81
7196296--7196358	23	2.8	24	75	18	62	41	0	0	58	0.98
7198136--7198172	12	3.0	13	84	11	51	16	10	13	59	1.61
7199545--7199569	10	2.5	10	100	0	50	20	40	8	32	1.81
7202798--7202837	21	1.9	21	84	0	53	42	0	0	57	0.98
7217672--7217709	19	2.0	20	84	5	51	50	2	0	47	1.15
7220082--7220360	30	9.4	30	72	15	129	38	2	25	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7220145--7220357	59	3.6	57	78	9	196	38	3	23	34	1.71
7221078--7221205	68	1.9	68	81	1	159	53	7	3	35	1.47
7222189--7222822	39	16.3	39	70	1	383	26	19	29	24	1.98
7222159--7222371	117	1.8	117	87	0	318	26	18	31	23	1.98
7222236--7222802	78	7.3	78	84	1	699	25	18	31	24	1.97
7223128--7223798	50	13.5	49	76	8	475	16	33	16	33	1.92
7223130--7223782	99	6.6	99	78	6	520	16	33	16	33	1.92
7223219--7223770	149	3.7	147	82	5	567	16	32	17	33	1.93
7223913--7223979	35	1.9	35	96	0	125	35	11	16	35	1.86
7224753--7224820	21	3.2	21	85	8	84	7	14	0	77	0.96
7224767--7224869	15	6.9	14	68	13	53	5	17	0	76	0.97
7224800--7224871	37	1.9	37	83	10	94	4	19	0	76	0.95
7224838--7224864	11	2.5	11	100	0	54	7	7	0	85	0.75
7227306--7227377	36	2.0	36	94	0	126	22	16	19	41	1.90
7229596--7229919	30	11.0	29	75	11	241	38	2	25	34	1.68
7229597--7229919	59	5.5	57	78	10	303	38	2	25	34	1.68
7230572--7230839	125	2.1	124	90	2	428	53	7	5	32	1.53
7234073--7234097	3	8.3	3	100	0	50	32	0	36	32	1.58
7236310--7236344	18	1.9	18	88	0	52	31	8	8	51	1.63
7237098--7237186	38	2.2	41	84	5	112	51	4	4	39	1.42
7238925--7238957	5	6.6	5	100	0	66	39	0	0	60	0.97
7239467--7239517	21	2.4	22	80	9	70	58	5	1	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7245375--7245426	15	3.2	15	73	19	50	42	0	1	55	1.10
7245386--7245425	19	2.1	19	85	0	53	45	0	2	52	1.14
7245711--7245786	36	2.1	38	83	14	97	50	0	2	47	1.15
7246460--7246585	58	2.2	57	85	2	171	52	2	0	44	1.19
7246524--7246607	30	2.8	30	76	13	84	47	3	1	47	1.27
7249532--7249571	21	1.9	21	84	0	53	5	27	52	15	1.63
7255124--7255170	25	1.9	25	86	4	69	42	4	4	48	1.42
7255816--7255877	30	2.1	30	90	0	97	54	14	4	25	1.60
7255957--7255998	21	1.9	23	90	9	70	73	11	2	11	1.18
7258942--7259005	31	2.1	31	82	5	76	25	12	3	59	1.48
7259378--7259436	28	2.2	26	84	6	73	28	1	3	66	1.18
7259602--7259639	18	2.2	18	85	4	51	63	5	10	21	1.46
7260352--7260393	2	21.0	2	85	0	57	42	7	0	50	1.30
7260352--7260393	12	3.5	12	90	0	66	42	7	0	50	1.30
7271882--7271984	21	4.7	22	73	14	63	45	1	0	52	1.12
7271909--7271991	22	4.0	21	72	15	66	44	1	0	54	1.08
7271950--7271995	15	3.1	15	78	6	58	43	0	0	56	0.99
7272171--7272200	15	1.9	16	93	6	53	46	0	0	53	1.00
7272191--7272239	19	2.5	20	80	3	55	34	4	0	61	1.15
7298376--7298438	23	2.7	23	80	2	72	63	23	6	6	1.41
7298438--7298491	24	2.2	24	96	0	99	70	11	3	14	1.29
7298540--7298615	19	3.9	19	81	15	93	71	11	5	11	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7298540--7298612	18	3.8	18	83	9	83	71	12	5	10	1.30
7298558--7298626	22	3.3	22	86	11	85	69	15	4	10	1.32
7301752--7301783	14	2.3	14	100	0	64	21	0	0	78	0.76
7302611--7302688	30	2.6	30	82	8	95	20	34	8	35	1.84
7303066--7303109	5	8.8	5	80	9	54	77	2	20	0	0.88
7303073--7303109	20	2.0	20	89	10	60	78	0	21	0	0.75
7303352--7303409	21	2.8	21	91	0	80	25	27	17	29	1.97
7304533--7304633	31	3.3	29	71	8	76	53	5	3	36	1.44
7304530--7304646	61	1.9	61	89	0	180	52	5	3	39	1.41
7304532--7304659	61	2.1	61	86	0	175	51	5	3	39	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132