genome.fa.s12.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  12  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3382055--3382113	15	4.0	15	72	14	52	30	0	1	67	1.00
3385463--3385496	15	2.3	15	95	5	61	70	5	0	23	1.09
3398556--3398611	25	2.2	25	93	0	94	30	12	10	46	1.76
3407622--3407652	3	10.7	3	93	6	55	70	0	0	29	0.87
3410716--3410916	30	6.9	30	83	7	197	37	23	1	37	1.65
3410716--3410916	59	3.4	59	83	9	202	37	23	1	37	1.65
3410746--3410918	59	3.0	58	85	10	212	37	24	2	35	1.68
3410746--3410919	29	5.9	30	83	12	163	37	24	2	36	1.68
3413196--3413239	21	2.1	21	87	4	63	27	2	4	65	1.23
3415454--3415494	19	2.2	19	86	0	55	63	2	2	31	1.20
3417490--3417534	23	2.0	23	82	8	56	35	4	2	57	1.31
3423447--3423491	14	3.2	14	81	12	65	33	6	0	60	1.23
3423774--3423804	16	1.9	16	93	0	53	48	0	3	48	1.17
3425450--3425547	25	3.9	25	91	2	117	35	16	8	39	1.78
3428046--3428098	28	1.9	28	92	3	90	35	0	15	49	1.45
3429204--3429234	3	10.3	3	100	0	62	32	0	0	67	0.91
3429381--3429455	18	3.9	20	70	18	61	33	1	1	64	1.11
3429831--3429897	23	3.0	22	77	16	66	41	0	0	58	0.98
3429863--3429901	15	2.4	16	87	8	53	35	0	0	64	0.94
3429834--3429906	22	3.1	23	80	9	85	43	0	0	56	0.99
3429856--3429963	29	3.9	27	75	17	98	46	0	1	51	1.11
3429856--3430020	82	2.0	82	85	5	226	47	0	2	49	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3436570--3436755	99	1.9	99	83	6	243	39	12	18	29	1.88
3437126--3437423	29	10.1	30	76	16	177	35	4	25	34	1.76
3437140--3437318	29	6.1	29	81	12	188	34	4	25	36	1.76
3437099--3437279	58	3.1	58	80	12	169	35	6	25	32	1.81
3437099--3437295	87	2.3	86	79	11	213	35	6	25	32	1.81
3437301--3437411	30	3.7	29	82	12	118	38	3	21	36	1.71
3441334--3441372	17	2.3	17	86	0	51	43	0	0	56	0.99
3441341--3441377	17	2.2	17	95	0	65	40	0	0	59	0.97
3448410--3448434	12	2.1	12	100	0	50	68	24	0	8	1.16
3456145--3456191	21	2.2	21	85	7	60	65	0	2	31	1.04
3458235--3458286	22	2.2	24	90	6	81	36	1	0	61	1.07
3466554--3466594	2	20.5	2	100	0	82	51	0	0	48	1.00
3467996--3468055	31	1.9	31	83	6	77	35	0	1	63	1.05
3479736--3479848	56	2.0	56	98	0	217	42	8	20	28	1.82
3485879--3485920	11	3.9	11	81	3	50	35	7	9	47	1.64
3501480--3501523	12	3.8	11	82	8	52	20	0	4	75	0.98
3501488--3501525	11	3.2	12	85	11	51	23	0	2	73	0.95
3508510--3508565	25	2.1	25	83	9	67	62	8	5	23	1.45
3511819--3511859	21	2.0	21	85	0	55	48	4	9	36	1.58
3515274--3515323	17	3.2	15	78	15	57	42	2	0	56	1.11
3515283--3515318	18	2.1	17	89	5	54	38	0	0	61	0.96
3523023--3523070	24	2.0	24	88	8	71	56	16	2	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3532624--3532673	11	4.5	11	79	0	55	60	2	8	30	1.37
3532633--3532693	11	5.5	11	74	0	50	59	6	9	24	1.53
3541273--3541320	22	2.4	18	80	19	51	33	6	27	33	1.82
3542121--3542243	29	4.2	30	72	18	89	33	1	26	39	1.66
3542083--3542217	59	2.3	59	88	2	191	36	1	25	37	1.65
3542123--3542287	30	5.6	30	72	16	105	31	3	26	38	1.72
3542116--3542282	59	2.8	59	79	11	148	33	2	25	38	1.69
3542173--3542282	30	3.7	29	82	8	116	33	2	23	40	1.69
3542560--3542620	32	1.9	32	86	6	88	62	11	11	14	1.55
3544231--3544255	13	1.9	13	100	0	50	52	8	0	40	1.31
3545198--3545222	7	3.6	7	100	0	50	16	16	12	56	1.68
3547399--3547439	20	2.0	21	85	4	57	53	4	4	36	1.44
3553766--3553805	2	20.0	2	100	0	80	50	0	0	50	1.00
3554632--3554804	81	2.1	79	82	11	197	45	9	8	35	1.68
3577623--3577653	15	2.1	15	93	0	53	48	12	9	29	1.73
3577768--3577811	23	1.9	23	85	0	61	34	2	2	61	1.21
3583511--3583557	21	2.3	20	79	13	51	61	6	2	29	1.32
3599624--3599669	18	2.6	17	82	3	56	32	6	0	60	1.22
3599479--3599889	206	2.0	206	96	0	759	34	11	12	42	1.78
3599830--3599875	18	2.6	17	82	3	56	32	6	0	60	1.22
3603123--3603149	3	9.0	3	100	0	54	33	0	33	33	1.58
3608561--3608611	23	2.2	23	92	0	84	37	3	23	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3623106--3623169	28	2.3	27	89	2	92	39	7	15	37	1.77
3626310--3626375	31	2.1	31	82	0	78	42	9	15	33	1.78
3627893--3627956	34	1.9	34	93	6	114	54	3	17	25	1.57
3648753--3648803	24	2.1	24	85	0	66	56	0	23	19	1.42
3654763--3654904	30	4.9	29	68	16	87	38	4	27	30	1.76
3654759--3655016	59	4.4	58	81	7	233	38	4	25	31	1.76
3654764--3655016	117	2.2	117	81	11	288	39	4	24	31	1.75
3654882--3655016	29	4.6	29	75	6	139	40	3	23	31	1.72
3655974--3656016	16	2.6	17	85	14	63	46	0	0	53	1.00
3655974--3656017	15	2.7	16	89	10	63	47	0	0	52	1.00
3655967--3656020	18	2.9	18	81	18	67	48	0	0	51	1.00
3655992--3656037	24	1.9	24	90	0	74	43	2	2	52	1.25
3656849--3656935	17	5.1	17	78	2	84	50	5	1	42	1.33
3657262--3657689	194	2.2	199	86	3	589	22	23	18	35	1.96
3669706--3669813	30	3.6	31	75	13	118	38	1	26	32	1.67
3669678--3670013	59	5.7	59	79	8	312	37	2	25	34	1.70
3669706--3669935	29	7.8	29	71	14	150	37	1	25	35	1.64
3669674--3670027	29	12.1	27	69	16	138	37	2	26	33	1.70
3670992--3671034	16	2.6	17	85	14	63	46	0	0	53	1.00
3670992--3671035	15	2.7	16	89	10	63	47	0	0	52	1.00
3670985--3671038	18	2.9	18	81	18	67	48	0	0	51	1.00
3671010--3671055	24	1.9	24	90	0	74	43	2	2	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3671849--3671955	35	3.1	34	83	4	115	52	4	0	42	1.22
3671849--3671940	6	15.8	6	70	10	66	53	3	0	43	1.17
3671850--3671905	29	1.9	29	85	7	78	51	3	0	44	1.18
3671849--3671955	17	6.2	17	81	3	124	52	4	0	42	1.22
3672514--3672559	24	1.9	24	81	0	56	47	6	26	19	1.73
3678999--3679037	19	2.2	18	86	9	53	58	0	0	41	0.98
3679008--3679077	21	3.6	19	72	12	54	55	1	7	35	1.36
3679064--3679106	19	2.3	19	87	0	59	53	6	2	37	1.41
3680727--3680832	31	3.5	31	74	7	108	19	25	11	43	1.84
3681282--3681345	29	2.1	31	81	16	73	51	10	12	25	1.72
3681770--3681815	21	2.3	21	85	7	60	60	4	2	32	1.28
3686251--3686291	18	2.3	18	82	0	55	60	2	0	36	1.10
3686378--3686414	11	3.4	11	88	0	56	72	2	2	21	1.09
3686355--3686577	95	2.3	97	81	9	260	53	8	9	28	1.62
3690613--3690768	60	2.6	59	89	4	226	45	6	15	32	1.71
3691095--3691222	51	2.5	51	97	0	247	31	19	17	32	1.95
3692064--3692183	17	7.1	17	80	5	127	46	0	4	49	1.21
3692064--3692147	11	7.6	11	73	9	64	44	0	3	52	1.18
3692072--3692152	6	14.3	6	71	20	59	43	0	4	51	1.23
3692820--3692855	9	4.0	9	85	0	54	50	0	2	47	1.15
3693963--3694244	30	9.4	30	83	4	300	39	21	2	36	1.66
3693963--3694238	90	3.1	89	84	8	335	39	20	2	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3693963--3694329	30	12.4	29	76	10	246	37	23	2	36	1.68
3694195--3694385	28	6.7	28	72	19	119	34	29	4	31	1.77
3694223--3694380	57	2.8	57	82	7	196	34	29	3	32	1.76
3694195--3694352	29	5.6	27	73	19	110	34	27	2	34	1.71
3697022--3697084	11	5.5	11	83	5	81	41	3	1	53	1.26
3697032--3697100	17	4.1	16	83	12	77	43	1	2	52	1.25
3697029--3697083	6	9.7	6	78	11	62	43	1	1	52	1.22
3697278--3697317	20	2.0	21	90	5	64	20	45	17	17	1.86
3697843--3697889	19	2.5	20	80	13	55	59	2	2	36	1.21
3697827--3697876	25	2.0	25	84	7	66	60	4	0	36	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132