genome.fa.s12.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  95  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29240370--29240619	60	4.2	59	77	7	229	37	23	3	35	1.71
29246800--29247286	50	9.9	50	75	8	279	33	17	30	18	1.94
29246875--29247151	93	2.9	91	80	9	263	34	18	30	16	1.93
29246964--29247286	49	6.5	50	80	2	305	34	18	30	17	1.93
29246855--29247250	148	2.7	142	81	3	425	33	18	30	17	1.94
29246730--29247286	99	5.7	98	76	7	417	33	17	30	17	1.94
29247530--29247659	39	3.4	39	84	4	165	29	31	14	24	1.95
29247530--29248459	78	11.9	78	86	1	1184	32	24	17	26	1.96
29249769--29250044	30	9.4	28	79	8	221	38	23	3	35	1.71
29249747--29250060	30	10.6	30	75	10	211	37	23	3	35	1.72
29249747--29250044	58	5.1	59	76	6	226	37	23	3	35	1.73
29252967--29253017	18	2.6	19	84	12	68	33	19	7	39	1.81
29256540--29256666	63	2.0	63	98	0	245	33	18	20	27	1.96
29258199--29258229	16	1.9	16	93	0	53	22	32	9	35	1.87
29259239--29259290	21	2.6	18	77	17	50	40	19	1	38	1.63
29259402--29259495	22	4.0	22	85	9	116	41	20	26	11	1.86
29259425--29259507	26	3.3	26	93	6	138	40	20	26	12	1.87
29263501--29263589	44	2.0	44	100	0	178	41	6	4	47	1.50
29266684--29266731	19	2.5	20	75	21	50	45	0	0	54	0.99
29268269--29268313	18	2.5	18	81	0	54	53	8	31	6	1.58
29269699--29269807	52	2.1	53	98	1	211	36	12	27	22	1.91
29271192--29271216	12	2.1	12	100	0	50	36	8	16	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29274454--29274530	37	2.1	37	92	0	127	33	20	12	32	1.91
29278465--29278529	22	2.9	22	81	2	67	41	16	27	13	1.87
29283964--29284052	29	3.2	28	78	16	105	60	12	3	23	1.47
29292485--29294034	769	2.0	769	99	0	3091	32	17	17	32	1.93
29301219--29301303	29	2.9	29	72	17	77	44	3	5	45	1.45
29302119--29302181	6	11.2	6	71	19	55	42	0	3	53	1.16
29302137--29302181	16	2.7	17	93	3	74	42	0	0	57	0.98
29302125--29302201	27	2.8	28	80	5	86	44	2	3	49	1.34
29302116--29302159	11	4.0	11	82	8	54	43	0	4	52	1.22
29302152--29302192	17	2.4	17	87	0	55	43	2	2	51	1.28
29303478--29303581	30	3.6	28	79	16	115	34	29	1	33	1.69
29303447--29303580	29	4.6	28	75	18	105	32	29	2	36	1.70
29303568--29303709	28	4.9	28	68	12	99	33	31	3	30	1.75
29303574--29303784	30	7.2	30	69	17	140	32	30	3	33	1.74
29303438--29303784	58	6.0	58	82	6	364	32	30	3	33	1.74
29303438--29303784	174	2.0	174	83	8	438	32	30	3	33	1.74
29306492--29306545	24	2.4	23	80	17	60	42	20	5	31	1.75
29308538--29308610	21	3.2	21	80	16	83	38	21	13	26	1.91
29318623--29318657	14	2.4	15	90	4	54	74	0	8	17	1.06
29320107--29320219	25	4.3	27	76	8	92	38	23	18	20	1.94
29320144--29320406	52	5.0	54	77	11	215	38	21	15	24	1.92
29320144--29320406	27	9.9	27	78	9	222	38	21	15	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29320145--29320406	79	3.3	80	82	3	298	38	21	15	24	1.92
29322653--29322704	22	2.2	25	80	19	67	11	11	3	73	1.23
29322658--29322704	24	2.1	24	88	11	73	12	10	4	72	1.25
29323416--29323450	17	1.9	17	88	11	52	60	5	5	28	1.43
29334931--29334995	30	2.1	31	82	2	78	43	0	4	52	1.22
29335170--29335229	25	2.4	25	83	2	68	36	13	11	38	1.81
29343641--29343679	19	2.1	18	90	4	60	41	2	0	56	1.13
29348730--29348775	15	3.2	15	78	12	51	32	0	2	65	1.05
29348720--29348782	28	2.2	29	85	2	83	30	1	3	65	1.18
29348720--29348784	29	2.2	30	81	10	73	30	1	3	64	1.18
29355258--29355297	17	2.4	17	86	0	53	42	25	17	15	1.88
29357283--29357330	24	2.0	24	95	0	87	41	27	18	12	1.86
29361779--29361826	24	2.0	24	100	0	96	41	25	20	12	1.87
29365277--29365309	11	3.0	11	95	0	57	36	3	18	42	1.66
29365420--29365488	30	2.3	30	80	7	77	39	7	24	28	1.82
29366890--29367085	40	4.9	39	83	7	209	26	16	23	33	1.96
29366889--29367091	80	2.5	79	85	5	257	25	16	25	33	1.96
29367731--29367755	2	12.5	2	100	0	50	0	0	48	52	1.00
29380703--29380751	3	16.3	3	100	0	98	34	0	0	65	0.93
29382140--29382169	15	2.0	15	93	0	51	60	10	0	30	1.30
29394465--29394505	2	20.5	2	94	0	73	2	0	46	51	1.14
29397302--29397744	195	2.3	195	83	4	554	29	18	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29398497--29398548	21	2.5	21	80	0	59	21	15	30	32	1.94
29415046--29415092	17	2.8	17	90	3	60	51	14	10	23	1.74
29415057--29415092	17	2.1	17	100	0	72	52	11	11	25	1.69
29428219--29428267	19	2.5	19	87	9	64	57	6	0	36	1.24
29428288--29428331	20	2.2	20	88	11	65	68	2	0	29	1.02
29428279--29428331	18	2.8	18	83	13	63	69	1	0	28	0.99
29443547--29443586	21	1.9	21	94	0	71	35	25	10	30	1.88
29448287--29448438	40	3.8	40	79	10	182	39	19	23	17	1.92
29448287--29448465	82	2.2	81	89	5	263	40	17	24	17	1.90
29454993--29455110	40	2.9	41	81	6	125	42	13	27	16	1.86
29457573--29457604	16	2.0	16	93	0	55	43	3	0	53	1.16
29457589--29457704	26	4.6	26	75	15	118	50	8	0	41	1.33
29457580--29457730	34	4.3	34	67	18	101	49	9	0	40	1.36
29457946--29457984	12	3.2	12	85	0	51	58	7	0	33	1.26
29457946--29457984	18	2.2	18	90	0	60	58	7	0	33	1.26
29469980--29470104	66	1.9	66	81	3	153	42	16	25	15	1.87
29470390--29470519	43	3.0	43	83	4	163	30	18	26	24	1.98
29494154--29494415	59	4.5	57	77	11	210	34	5	27	32	1.80
29494184--29494420	59	4.0	58	79	10	259	35	4	28	32	1.77
29494188--29494415	29	7.8	30	74	13	163	35	3	27	32	1.75
29496245--29496324	17	4.7	17	85	3	99	50	3	2	43	1.33
29496238--29496310	6	12.5	6	71	25	50	49	2	1	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29496231--29496274	23	1.9	23	90	9	72	50	0	0	50	1.00
29496753--29496967	48	4.4	49	73	14	167	16	23	18	41	1.90
29496704--29496967	146	1.8	147	89	2	415	17	21	18	42	1.90
29496736--29497209	146	3.2	147	77	6	372	17	27	18	35	1.94
29496988--29497273	49	5.8	49	77	10	246	18	32	17	31	1.94
29496988--29497273	99	2.9	99	74	12	275	18	32	17	31	1.94
29496956--29497271	148	2.1	148	88	3	476	18	32	17	32	1.93
29497960--29498072	42	2.6	44	84	5	131	19	26	15	38	1.92
29507562--29507735	29	5.9	29	75	16	119	33	4	29	32	1.76
29507581--29507729	29	5.0	29	78	15	137	32	4	31	32	1.76
29507562--29507730	59	2.9	58	84	7	207	34	4	29	31	1.77
29509516--29509585	17	3.7	17	68	27	52	51	4	1	42	1.30
29509521--29509577	17	2.8	21	72	27	59	50	5	0	43	1.24
29510912--29511046	30	4.5	30	71	14	98	38	17	6	37	1.76
29510968--29511068	29	3.4	30	78	13	102	36	18	5	38	1.76
29511115--29511189	30	2.3	34	74	21	81	20	10	4	65	1.40
29511940--29513107	263	4.4	263	92	1	1926	27	10	12	49	1.72
29511940--29513107	528	2.2	528	92	1	1948	27	10	12	49	1.72
29515421--29515493	11	6.7	11	72	16	55	8	1	28	61	1.33
29515419--29515493	22	3.3	21	75	17	62	8	1	29	61	1.33
29522488--29522542	27	2.1	25	86	6	74	47	14	1	36	1.55
29524455--29524489	18	1.9	18	88	0	52	57	2	0	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29524725--29524762	17	2.2	17	90	0	58	34	2	0	63	1.09
29524741--29524828	45	1.9	46	83	2	115	34	2	2	61	1.21
29524746--29524849	45	2.3	45	80	3	111	40	1	1	55	1.22
29527125--29527464	43	8.0	43	79	2	371	27	26	17	29	1.97
29527125--29527470	127	2.7	128	82	2	408	27	26	16	29	1.97
29531087--29531284	30	6.6	30	83	4	229	38	20	2	37	1.66
29542859--29543968	49	22.8	49	68	11	496	35	15	27	20	1.94
29542857--29543919	98	10.9	98	82	3	1214	35	15	27	20	1.93
29542857--29543912	196	5.4	194	88	2	1438	35	15	27	20	1.93
29545638--29545840	58	3.4	57	78	11	162	37	19	4	38	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132