genome.fa.s146.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  100  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13965324--13965408	6	13.7	6	71	23	61	77	1	5	15	1.01
13965319--13965391	25	2.9	25	79	18	80	76	1	6	15	1.05
13965324--13965402	31	2.5	32	83	10	99	77	1	6	15	1.03
13965324--13965407	11	7.8	11	74	15	61	77	1	5	15	1.02
13965830--13965866	10	3.6	10	92	3	56	35	21	27	16	1.94
13965991--13966039	26	1.9	26	95	4	91	40	14	4	40	1.64
13966402--13966550	3	48.7	3	74	20	98	67	2	0	30	1.07
13966402--13966546	14	10.5	14	72	20	94	66	2	0	30	1.08
13966385--13966562	87	2.1	85	85	12	240	67	2	1	28	1.12
13966400--13966568	9	19.4	8	70	21	85	67	2	0	28	1.10
13966401--13966570	17	10.3	16	73	18	120	67	2	0	29	1.10
13966459--13966593	20	8.1	16	70	20	57	71	3	0	23	1.06
13966752--13966814	1	63.0	1	80	0	72	0	0	9	90	0.45
13966752--13966814	16	3.9	17	78	21	82	0	0	9	90	0.45
13966752--13966814	24	2.7	23	92	7	108	0	0	9	90	0.45
13966821--13967070	41	6.1	41	97	0	459	35	24	16	22	1.95
13966821--13967070	81	3.1	82	95	2	459	35	24	16	22	1.95
13968082--13968193	17	6.8	17	75	16	94	8	12	0	79	0.93
13968096--13968193	37	2.6	37	85	12	130	8	11	0	80	0.90
13968104--13968194	9	10.7	9	79	15	97	7	10	0	81	0.88
13968082--13968193	9	13.6	8	80	15	90	8	12	0	79	0.93
13968090--13968185	13	7.1	13	69	23	56	7	11	0	81	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13978556--13978590	6	5.8	6	100	0	70	68	14	0	17	1.21
13978627--13979495	57	14.7	57	83	10	1031	34	12	7	45	1.70
13978627--13979494	183	4.9	180	90	5	1321	34	12	7	45	1.70
13979156--13979247	28	3.1	28	63	19	69	35	16	6	41	1.74
13979522--13979612	15	5.6	16	76	17	82	78	1	4	16	0.98
13979522--13979599	32	2.4	32	85	12	97	78	1	3	16	0.97
13979522--13979607	6	14.7	6	69	21	58	77	1	4	16	0.99
13979733--13979766	13	2.6	13	95	0	59	5	29	41	23	1.78
13980710--13980765	16	3.3	17	76	19	55	64	5	0	30	1.16
13980732--13980801	9	8.9	8	80	19	53	75	2	1	20	1.00
13980648--13980794	42	3.6	42	72	15	103	68	6	0	24	1.16
13981281--13981329	20	2.5	20	89	0	71	36	2	4	57	1.30
13981587--13981638	23	2.3	23	90	3	79	53	13	0	32	1.40
13981587--13981631	22	2.2	21	84	11	58	55	11	0	33	1.35
13982135--13982206	21	3.3	21	82	5	81	56	0	1	41	1.07
13989855--13990225	133	2.9	128	77	10	346	40	9	10	39	1.73
13989856--13990225	127	2.8	128	77	10	342	40	10	10	39	1.73
13990039--13990298	64	4.1	66	75	12	204	40	9	9	40	1.71
13994887--13995004	56	2.1	55	82	6	139	16	20	10	53	1.71
14009119--14009179	30	2.0	30	87	0	86	34	9	0	55	1.33
14014926--14014974	3	16.3	3	95	0	89	67	0	2	30	1.02
14014994--14015039	18	2.5	19	78	3	58	80	2	6	10	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14015285--14015321	19	1.9	19	94	0	65	40	24	8	27	1.83
14016142--14016222	42	1.9	42	84	0	108	46	16	11	25	1.79
14016277--14016433	43	3.7	41	78	10	140	45	14	13	27	1.81
14016243--14016432	86	2.2	86	85	8	244	46	12	12	28	1.78
14039003--14039035	3	11.0	3	100	0	66	66	0	0	33	0.92
14039870--14039909	19	2.1	19	90	0	62	77	2	2	17	0.99
14045323--14045365	19	2.3	19	83	0	50	55	4	4	34	1.41
14047900--14047989	30	3.0	29	77	4	90	45	8	0	45	1.34
14050922--14051004	23	3.5	23	79	9	85	51	6	6	36	1.51
14050943--14051004	26	2.5	25	82	10	83	56	4	3	35	1.37
14051155--14051205	22	2.3	23	80	10	61	60	0	0	39	0.97
14053335--14053364	2	15.0	2	92	0	51	53	0	0	46	1.00
14054124--14054183	24	2.5	24	75	5	59	36	30	15	18	1.91
14054422--14054615	85	2.3	85	80	5	205	43	22	10	23	1.83
14054422--14054649	85	2.7	85	79	4	201	42	22	10	24	1.84
14055097--14055151	22	2.5	23	76	8	60	38	20	14	27	1.91
14055141--14055248	19	5.7	19	70	10	69	42	24	13	19	1.87
14055546--14055612	27	2.5	27	87	4	100	31	25	14	28	1.95
14055665--14055706	19	2.2	19	91	0	66	35	21	21	21	1.96
14057537--14057561	13	1.9	13	100	0	50	64	0	4	32	1.12
14057926--14057960	13	2.8	13	91	4	54	71	5	0	22	1.07
14058902--14058956	15	3.5	15	78	7	56	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14058894--14058955	31	2.0	31	84	3	81	45	0	0	54	0.99
14058927--14058979	22	2.5	22	96	3	99	49	0	0	50	1.00
14059062--14059116	26	2.0	27	86	10	76	30	12	36	20	1.90
14060486--14060517	14	2.3	14	94	0	55	46	0	0	53	1.00
14072018--14072160	69	2.1	69	100	0	286	36	16	4	43	1.67
14081463--14081489	4	6.8	4	100	0	54	74	0	25	0	0.83
14082049--14082110	31	2.0	31	84	6	81	50	4	0	45	1.23
14082136--14082186	8	6.0	8	80	15	50	47	0	0	52	1.00
14084432--14084473	23	1.9	22	81	18	52	45	0	4	50	1.23
14084902--14085043	73	1.9	74	87	4	207	38	8	4	48	1.55
14085418--14085471	18	2.8	19	71	15	56	42	14	0	42	1.46
14085184--14085628	183	2.4	184	80	5	499	36	8	4	49	1.55
14085483--14085617	71	1.9	71	87	7	200	38	7	2	51	1.45
14086211--14086256	23	2.0	23	87	8	67	41	0	0	58	0.98
14086242--14086284	21	2.0	21	95	0	77	55	9	0	34	1.32
14089389--14089446	2	29.0	2	100	0	116	0	50	0	50	1.00
14091392--14091430	2	19.5	2	100	0	78	48	0	0	51	1.00
14092182--14092230	15	3.2	15	80	5	53	65	10	0	24	1.23
14092177--14092215	16	2.6	15	84	8	53	66	5	0	28	1.12
14092266--14092406	73	1.9	73	84	5	187	48	14	7	29	1.71
14093550--14093574	10	2.5	10	100	0	50	32	12	48	8	1.69
14095436--14095466	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14095473--14095524	21	2.5	21	81	3	61	44	3	0	51	1.19
14095615--14095660	21	2.2	21	84	7	58	41	0	0	58	0.98
14096885--14096972	36	2.5	33	75	21	81	50	1	1	47	1.16
14098775--14098832	21	2.7	21	75	21	66	25	0	3	70	1.03
14099689--14099750	21	2.9	21	81	13	72	14	4	4	75	1.13
14100198--14100266	18	3.8	18	73	9	52	78	8	1	11	1.03
14103798--14103846	6	8.5	6	91	8	84	51	0	0	48	1.00
14107605--14107652	2	24.0	2	95	0	87	52	0	0	47	1.00
14107965--14108019	28	2.0	27	86	10	76	58	0	1	40	1.09
14108047--14108089	21	2.0	20	82	8	50	46	0	2	51	1.13
14108306--14108349	21	2.1	21	87	8	63	61	0	4	34	1.16
14108816--14108856	8	5.0	8	96	3	73	73	14	0	12	1.11
14111420--14111497	33	2.4	33	86	0	111	42	10	16	30	1.82
14116716--14116760	16	2.8	16	86	0	54	46	2	4	46	1.35
14116751--14116802	22	2.5	22	93	6	90	34	0	5	59	1.21
14122112--14122149	20	1.9	20	88	0	58	57	2	0	39	1.12
14122164--14122210	24	2.0	24	83	8	60	65	0	2	31	1.04
14122153--14122220	35	1.9	35	85	5	93	61	0	1	36	1.05
14122373--14122436	26	2.4	25	87	10	83	54	7	3	34	1.45
14122420--14122461	20	2.2	19	83	12	50	66	4	2	26	1.23
14122394--14122461	19	3.7	19	71	13	61	63	5	4	26	1.36
14122700--14122795	37	2.6	36	82	9	104	37	3	2	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14125593--14125626	8	4.5	8	85	14	54	50	0	0	50	1.00
14125784--14125826	12	3.7	12	78	6	52	41	0	6	51	1.29
14130219--14130257	4	9.8	4	94	0	51	51	15	0	33	1.44
14132472--14132504	2	16.5	2	100	0	66	0	51	0	48	1.00
14134737--14134795	24	2.7	21	73	14	64	57	0	8	33	1.29
14135482--14135508	3	9.0	3	100	0	54	66	0	0	33	0.92
14141211--14141257	25	1.9	24	83	12	60	51	0	2	46	1.13
14142011--14142087	29	2.6	30	81	8	86	50	1	0	48	1.09
14143833--14143879	23	2.0	24	83	4	60	72	2	2	23	1.06
14143940--14143987	25	2.0	24	87	4	69	70	2	10	16	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120