genome.fa.s146.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  1  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2283--2333	26	2.0	26	92	0	84	27	27	17	27	1.98
1118--3734	741	3.6	735	90	2	3904	27	23	22	27	1.99
3025--3076	26	2.0	26	92	0	86	30	23	17	28	1.97
3017--5775	863	3.1	876	78	10	2759	24	24	24	25	2.00
5659--5711	26	2.0	26	100	0	106	26	26	20	26	1.99
5861--6283	211	2.0	208	91	2	677	24	26	23	24	2.00
6432--6484	26	2.0	26	100	0	106	26	26	20	26	1.99
7323--7374	26	2.0	25	96	3	95	28	26	17	26	1.97
6072--9889	903	4.3	893	86	3	5223	25	24	23	25	2.00
8224--8276	26	2.0	26	92	0	88	30	20	20	28	1.98
9121--9172	26	2.0	25	92	3	86	28	25	17	28	1.97
9089--10638	751	2.1	744	89	2	2331	26	24	23	26	2.00
11625--11677	26	2.0	26	88	0	79	28	28	16	26	1.97
9835--15933	889	6.9	887	85	5	7758	25	24	24	25	2.00
12526--12577	25	2.0	26	92	3	88	26	21	21	30	1.98
13403--13455	26	2.0	26	89	7	81	30	22	18	28	1.98
14286--14338	26	2.0	26	92	0	88	26	26	20	26	1.99
15169--15221	26	2.0	26	88	0	79	28	24	16	30	1.97
15195--17393	718	3.0	715	85	6	3098	26	23	23	26	2.00
19252--19307	26	2.2	26	90	0	85	35	23	12	28	1.91
16651--32525	873	17.9	882	84	5	17944	25	24	23	25	2.00
21031--21081	26	2.0	26	96	0	93	29	25	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21923--21975	26	2.0	26	96	0	97	28	26	18	26	1.98
20154--32525	884	13.8	895	85	3	15291	26	24	23	25	2.00
22813--22865	26	2.0	26	96	0	97	28	26	18	26	1.98
23718--23767	26	1.9	26	88	8	75	26	24	20	30	1.98
24605--24657	26	2.0	26	92	0	88	28	24	18	28	1.98
25490--25542	26	2.0	26	88	0	79	30	22	20	26	1.98
28122--28174	26	2.0	26	92	0	88	28	20	20	30	1.98
29923--30001	26	3.0	26	89	7	124	30	25	17	26	1.97
30850--30902	26	2.0	26	92	0	88	28	24	18	28	1.98
31748--31800	26	2.0	26	96	0	97	28	26	18	26	1.98
33230--33282	26	2.0	26	96	0	97	28	26	18	26	1.98
34123--34174	26	2.0	26	96	3	97	26	26	19	26	1.99
32800--35264	892	2.8	887	85	3	3266	25	24	24	25	2.00
35011--35060	25	2.0	26	92	4	84	24	28	18	30	1.97
36137--36190	26	2.1	26	93	6	92	25	25	18	29	1.98
37033--37085	26	2.0	26	96	0	97	28	22	18	30	1.98
37596--37648	26	2.0	26	96	0	97	28	26	18	26	1.98
38339--38390	26	2.0	27	88	3	79	26	25	17	30	1.97
39389--39441	26	2.0	26	100	0	106	26	26	20	26	1.99
37622--40882	902	3.7	883	83	6	3875	26	24	23	25	2.00
40974--41026	26	2.0	26	96	0	97	26	24	20	28	1.99
42734--42786	26	2.0	26	88	0	79	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41864--43506	883	1.8	891	87	2	2455	25	23	25	25	2.00
45917--45968	26	2.0	25	92	3	86	26	23	23	26	2.00
46820--46871	25	2.0	26	96	3	97	26	25	21	26	1.99
47280--47350	26	2.7	26	93	0	115	32	19	15	32	1.93
46828--47741	476	1.9	478	88	1	1388	25	21	24	28	1.99
49058--49110	26	2.0	26	88	0	79	26	24	20	28	1.99
47306--52188	881	5.6	888	83	6	5802	25	24	24	25	2.00
50799--50851	26	2.0	26	100	0	106	26	26	20	26	1.99
49688--52188	869	2.9	874	83	6	3003	24	24	25	25	2.00
53889--53941	26	2.0	26	96	0	97	28	26	18	26	1.98
52973--55468	894	2.8	891	92	1	4106	26	23	23	25	2.00
54783--54835	26	2.0	26	100	0	106	26	26	20	26	1.99
55474--55524	26	2.0	26	92	0	84	31	23	17	27	1.97
56290--56342	26	2.0	26	92	0	88	24	26	20	28	1.99
58074--58126	26	2.0	26	88	0	79	30	24	18	26	1.98
58978--59027	26	1.9	26	95	0	91	24	30	18	28	1.97
59884--59936	26	2.0	26	92	0	88	26	22	20	30	1.98
55605--68018	903	14.0	904	83	6	13949	25	25	23	25	2.00
61644--61696	26	2.0	26	100	0	106	26	26	20	26	1.99
63381--63455	26	2.9	26	95	0	141	25	26	20	28	1.99
65168--65217	26	1.9	26	100	0	100	24	18	22	36	1.95
71264--71316	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71596--72037	223	2.0	223	90	0	697	38	18	16	26	1.92
72368--72420	26	2.0	26	96	0	97	32	24	16	26	1.97
72394--74007	827	2.0	816	88	2	2421	25	24	24	25	2.00
75868--75920	26	2.0	26	92	0	88	24	24	20	30	1.99
76764--76816	26	2.0	26	96	0	97	30	24	16	28	1.97
73211--77307	895	4.6	895	87	2	5617	25	24	24	25	2.00
77360--77411	26	2.0	26	100	0	104	26	26	19	26	1.99
79998--80048	26	2.0	26	96	0	93	27	23	19	29	1.98
82655--82706	26	2.0	26	96	0	95	28	26	17	26	1.97
84407--84459	26	2.0	26	92	0	88	26	22	24	26	2.00
85290--85342	26	2.0	26	92	0	88	28	26	20	24	1.99
81916--98468	894	18.7	893	86	4	20998	25	24	24	25	2.00
86184--86236	26	2.0	26	100	0	106	26	26	20	26	1.99
87066--87118	26	2.0	26	96	0	97	26	24	20	28	1.99
87952--88003	26	2.0	26	96	0	95	28	26	17	26	1.97
90601--90653	26	2.0	26	96	0	97	26	24	20	28	1.99
93265--93317	26	2.0	26	92	0	88	26	26	20	26	1.99
94150--94200	26	2.0	26	88	0	75	25	25	17	31	1.97
95053--95103	26	2.0	26	92	0	84	25	27	17	29	1.98
95920--95972	26	2.0	26	82	13	65	26	24	18	30	1.98
96814--96866	26	2.0	26	96	0	97	26	28	22	22	1.99
99638--99690	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99779--102596	714	4.0	711	86	3	3828	27	23	23	24	2.00
102672--102727	26	2.2	26	100	0	112	28	25	19	26	1.99
104286--104337	26	2.0	26	84	0	68	26	23	17	32	1.96
105182--105233	25	2.0	26	92	3	88	28	23	19	28	1.98
106962--107014	26	2.0	26	92	0	88	28	28	18	24	1.98
107853--107905	26	2.0	26	100	0	106	26	26	20	26	1.99
104212--108889	878	5.2	884	84	5	5738	25	25	23	24	2.00
108747--108799	26	2.0	26	96	0	97	28	26	18	26	1.98
109392--109626	58	4.0	59	82	6	280	34	11	8	45	1.70
109392--109623	118	2.0	118	87	5	335	34	11	8	45	1.70
109634--109691	14	4.2	14	76	8	57	77	1	6	13	1.05
109641--109691	17	2.9	17	76	21	52	78	1	5	13	1.02
109678--109718	17	2.5	16	84	7	55	73	0	4	21	1.02
109726--109783	27	2.1	29	81	12	68	77	3	1	17	0.99
111111--111159	21	2.4	21	89	3	73	0	4	18	77	0.92
111111--111166	20	2.8	20	86	7	78	0	3	16	80	0.85
111107--111164	7	8.6	7	75	5	57	0	3	15	81	0.83
111173--111512	42	8.1	41	92	2	500	35	23	16	24	1.95
112765--112807	17	2.5	17	88	0	59	4	18	0	76	0.95
112761--112839	22	3.5	22	80	14	81	5	16	2	75	1.08
116723--117017	58	5.0	59	86	3	423	34	12	7	45	1.71
116725--117014	118	2.5	117	89	4	431	34	13	6	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117025--117082	14	4.2	14	76	8	57	77	1	6	13	1.05
117032--117082	17	2.9	17	76	21	52	78	1	5	13	1.02
117069--117108	17	2.4	16	84	8	53	72	0	5	22	1.04
117124--117178	15	3.7	15	77	17	53	83	5	1	9	0.86
118200--118298	27	3.9	27	68	20	70	68	5	1	25	1.16
119140--119192	26	2.0	26	92	0	88	30	26	18	24	1.98
118419--129323	903	12.1	903	87	2	14849	25	25	24	24	2.00
120950--121002	26	2.0	26	88	0	79	28	22	20	28	1.99
121859--121911	26	2.0	26	96	0	97	28	26	18	26	1.98
122754--122804	26	2.0	26	84	7	68	29	23	17	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120