genome.fa.s146.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  60  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6786810--6786872	3	21.0	3	79	12	67	60	0	3	36	1.13
6797589--6797618	15	2.0	15	93	0	51	36	0	0	63	0.95
6798261--6798299	18	2.2	18	86	13	55	41	10	2	46	1.51
6797835--6798625	181	4.4	179	76	6	589	41	9	8	41	1.67
6799065--6799104	20	2.0	20	85	0	53	40	2	2	55	1.27
6799182--6799535	180	2.0	181	79	5	396	44	9	6	40	1.61
6799788--6799822	18	1.9	18	88	0	52	51	0	2	45	1.16
6799790--6799865	25	3.1	25	79	9	77	51	3	1	43	1.28
6799817--6799849	13	2.5	14	85	14	52	51	6	0	42	1.26
6799940--6799975	18	1.9	19	88	5	56	55	2	2	38	1.29
6800693--6800735	22	2.0	21	86	4	59	55	2	2	39	1.25
6800741--6800781	10	4.3	10	81	9	50	56	0	2	41	1.13
6800968--6801015	25	2.0	24	83	4	60	47	0	2	50	1.12
6801277--6801330	19	2.7	19	80	11	56	51	1	0	46	1.11
6801866--6801909	23	1.9	23	86	9	63	56	4	2	36	1.32
6802072--6802193	18	6.9	17	71	17	81	52	1	1	44	1.20
6802064--6802148	12	6.8	12	72	17	59	50	2	1	45	1.22
6802064--6802148	28	3.0	29	81	11	88	50	2	1	45	1.22
6802072--6802136	8	8.0	8	76	23	57	50	1	1	46	1.20
6802069--6802213	15	10.2	15	68	20	64	51	1	1	46	1.18
6802322--6802377	17	3.3	17	73	14	53	51	0	1	46	1.11
6802285--6802365	28	2.8	28	71	3	72	51	0	1	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6804578--6804634	24	2.4	24	80	13	73	45	3	0	50	1.18
6805243--6805283	21	2.0	21	90	0	64	36	4	0	58	1.20
6805458--6805522	25	2.7	23	77	17	60	49	1	1	47	1.20
6805555--6805602	14	3.5	14	75	13	55	52	0	0	47	1.00
6805556--6805604	22	2.2	22	78	7	55	51	0	0	48	1.00
6805617--6805653	19	1.9	19	88	0	56	43	0	0	56	0.99
6805640--6805717	10	7.8	10	72	17	56	56	2	0	41	1.13
6805642--6805702	16	3.5	18	77	18	58	60	3	0	36	1.13
6805887--6805931	18	2.5	18	85	7	56	40	2	4	53	1.33
6806350--6806385	4	8.8	4	87	6	54	50	0	0	50	1.00
6806520--6806562	15	2.8	16	86	10	54	46	4	0	48	1.22
6806697--6806721	5	5.0	5	100	0	50	60	0	0	40	0.97
6806890--6806935	23	2.0	23	83	8	58	41	4	4	50	1.42
6807162--6807230	32	2.2	32	85	10	90	46	0	2	50	1.16
6807402--6807452	23	2.2	24	82	10	61	52	0	3	43	1.19
6807425--6807482	28	2.1	27	84	12	73	48	0	3	48	1.18
6807646--6807680	17	2.0	18	88	5	54	45	0	0	54	0.99
6807674--6807707	17	1.9	18	88	5	52	58	0	0	41	0.98
6808003--6808046	16	2.8	16	83	13	63	59	0	2	38	1.10
6808471--6808558	12	6.9	12	69	20	54	45	1	1	52	1.15
6808471--6808594	12	10.2	12	69	18	51	47	0	1	50	1.16
6808729--6808771	22	2.0	22	86	9	61	53	6	0	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6809161--6809198	7	5.3	7	87	6	58	50	0	0	50	1.00
6810399--6810446	14	3.5	13	75	8	51	45	0	0	54	0.99
6810468--6810499	16	1.9	17	93	6	57	34	0	3	62	1.11
6810468--6810533	17	4.2	14	76	19	51	39	0	3	57	1.14
6810965--6810989	6	4.2	6	100	0	50	48	0	0	52	1.00
6811269--6811313	22	2.0	22	87	8	65	40	2	2	55	1.24
6811897--6811970	10	6.8	10	77	22	62	51	0	0	48	1.00
6811898--6811987	20	4.7	20	74	23	70	51	0	0	48	1.00
6811927--6811957	14	2.2	14	94	0	53	51	0	0	48	1.00
6812151--6812212	23	2.6	25	84	5	83	48	3	1	46	1.28
6812341--6812403	24	2.6	26	75	17	80	44	3	1	50	1.27
6812342--6812415	24	3.2	24	78	19	77	41	2	1	54	1.23
6812467--6812602	22	6.0	22	66	22	77	46	2	0	50	1.18
6812974--6813030	27	2.1	27	83	6	71	50	1	3	43	1.29
6813107--6813182	25	3.0	25	75	19	77	50	1	1	47	1.18
6813970--6814002	18	1.9	17	88	11	50	48	6	6	39	1.53
6814533--6814570	11	3.7	11	83	16	55	44	0	0	55	0.99
6814675--6814722	21	2.4	19	80	19	53	41	2	0	56	1.11
6814909--6814938	16	1.9	16	93	6	53	30	6	6	56	1.51
6815229--6815266	19	2.0	19	89	0	58	47	0	0	52	1.00
6815294--6815348	28	2.0	28	85	0	74	43	3	1	50	1.30
6815715--6815806	21	4.3	21	66	17	55	46	1	1	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6816165--6816197	18	1.9	17	88	11	50	42	6	3	48	1.43
6816164--6816215	17	3.0	17	75	13	52	40	7	1	50	1.42
6816821--6816889	29	2.4	27	83	7	84	55	2	1	40	1.24
6816993--6817048	28	2.0	29	83	13	73	44	1	1	51	1.22
6817100--6817131	14	2.4	14	94	5	57	50	0	0	50	1.00
6817454--6817492	15	2.8	13	82	14	51	48	0	5	46	1.24
6817614--6817645	8	4.1	8	96	4	57	46	0	0	53	1.00
6817732--6817766	16	2.3	15	90	5	52	37	5	2	54	1.39
6817741--6817803	27	2.3	27	83	5	74	44	3	3	49	1.34
6817847--6817913	23	3.1	22	82	14	70	47	1	0	50	1.10
6818118--6818183	19	3.7	18	78	15	57	45	0	1	53	1.09
6818133--6818186	18	3.1	16	80	20	56	48	0	0	51	1.00
6819147--6819176	14	2.1	15	93	6	53	50	0	0	50	1.00
6819206--6819262	18	3.2	17	78	14	62	52	1	0	45	1.11
6819143--6819292	35	4.5	34	72	17	86	50	3	0	46	1.23
6819767--6819858	21	4.3	21	66	17	55	46	1	1	51	1.15
6820220--6820252	18	1.9	17	88	11	50	42	6	3	48	1.43
6820219--6820270	17	3.0	17	75	13	52	40	7	1	50	1.42
6821122--6821167	22	2.1	23	92	8	78	45	4	0	50	1.21
6821232--6821299	28	2.3	31	82	12	81	47	0	1	51	1.09
6821242--6821278	18	2.1	17	90	5	56	45	0	2	51	1.15
6821257--6821315	31	1.9	31	83	13	77	49	1	0	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6821651--6821713	21	3.0	21	77	15	60	42	6	3	47	1.44
6821739--6821763	13	1.9	13	100	0	50	52	0	8	40	1.31
6821899--6821951	17	3.1	17	76	7	54	43	0	1	54	1.11
6821894--6821949	22	2.6	23	86	8	73	42	0	1	55	1.10
6821961--6822039	31	2.6	29	78	15	79	49	0	2	48	1.14
6821954--6822128	85	2.1	84	80	9	196	49	0	3	46	1.23
6822608--6822657	21	2.3	22	82	3	66	50	2	2	46	1.24
6823174--6823212	19	2.1	19	85	9	53	61	0	0	38	0.96
6823384--6823453	29	2.4	29	84	15	83	45	0	0	54	0.99
6823415--6823476	21	3.0	21	75	13	65	46	1	0	51	1.10
6823384--6823503	32	3.7	31	78	9	89	46	1	0	50	1.17
6823396--6823499	32	3.3	31	75	12	93	45	1	0	51	1.18
6823629--6823735	17	6.1	17	70	14	65	48	1	1	47	1.23
6824099--6824525	180	2.4	181	80	5	454	44	8	7	39	1.64
6824544--6824591	16	3.0	16	80	14	55	39	4	0	56	1.19
6824715--6824755	12	3.2	12	86	10	55	43	0	0	56	0.99
6824683--6824754	25	3.0	25	75	13	64	54	0	0	45	0.99
6825880--6826011	6	22.2	6	67	22	57	51	4	0	43	1.27
6826107--6826173	16	4.3	16	73	19	61	52	2	0	44	1.16
6826159--6826224	14	4.7	15	73	19	54	50	1	1	46	1.20
6826784--6826859	37	2.1	37	83	9	95	53	1	0	44	1.08
6827006--6827038	14	2.4	14	90	5	50	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6827216--6827240	13	1.9	13	100	0	50	52	0	8	40	1.31
6827320--6827372	17	3.1	17	76	7	54	43	0	1	54	1.11
6827317--6827370	22	2.5	22	85	8	67	42	0	1	55	1.10
6827851--6827906	29	2.0	28	83	13	71	50	1	0	48	1.11
6829201--6829238	18	2.1	18	90	0	58	47	0	15	36	1.46
6829989--6830057	36	2.0	34	88	5	102	52	1	5	40	1.34
6830512--6830625	17	6.2	17	69	20	54	48	0	0	50	1.13
6830505--6830567	25	2.5	24	80	14	65	46	1	0	52	1.10
6830585--6830683	23	4.2	23	75	15	87	48	1	1	49	1.14
6830603--6830697	20	4.3	20	69	23	57	47	2	1	49	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120