genome.fa.s146.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  11  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1198823--1198875	26	2.0	26	96	0	97	26	26	18	28	1.98
1199724--1199775	25	2.0	26	85	3	70	26	26	15	30	1.96
1201353--1201405	26	2.0	26	88	0	79	28	26	16	28	1.97
1202251--1202329	26	3.0	26	94	0	131	27	27	20	24	1.99
1200458--1203036	914	2.8	918	85	5	2998	26	25	23	24	2.00
1203010--1203062	26	2.0	26	96	0	97	28	26	18	26	1.98
1203914--1203966	26	2.0	26	92	0	88	28	24	18	28	1.98
1204818--1204871	25	2.1	27	89	6	85	27	24	24	24	2.00
1205732--1205784	26	2.0	26	92	0	88	26	26	18	28	1.98
1208830--1210588	873	2.0	866	87	1	2520	25	24	24	25	2.00
1210562--1210614	26	2.0	26	88	0	79	26	26	18	28	1.98
1211303--1211353	26	2.0	26	88	0	75	23	31	19	25	1.98
1213611--1213661	26	2.0	26	92	0	84	29	23	15	31	1.95
1214499--1214550	26	2.0	26	100	0	104	26	26	19	26	1.99
1212742--1215494	888	3.1	885	87	3	3888	24	25	24	25	2.00
1215387--1215439	26	2.0	26	88	0	79	28	20	20	30	1.98
1216749--1216852	46	2.2	47	87	3	156	19	30	35	14	1.91
1217880--1217932	26	2.0	26	92	0	88	24	30	20	24	1.99
1218970--1219022	26	2.0	26	100	0	106	26	30	20	22	1.98
1219071--1219500	159	2.7	157	77	6	427	19	26	29	25	1.98
1219473--1219525	26	2.0	26	92	0	88	28	24	18	28	1.98
1222530--1222690	45	3.6	45	82	0	187	18	29	32	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223633--1223685	26	2.0	26	92	0	88	28	28	18	24	1.98
1223988--1224040	26	2.0	26	96	0	97	28	26	18	26	1.98
1231312--1231663	170	2.1	170	83	4	433	19	28	30	21	1.98
1231312--1231704	170	2.3	170	81	4	409	20	28	30	20	1.98
1232238--1232402	90	1.8	89	83	3	215	21	32	32	13	1.92
1232245--1232418	45	3.9	44	73	4	159	20	31	32	15	1.94
1232473--1232497	13	1.9	13	100	0	50	24	44	16	16	1.86
1233371--1233426	26	2.2	26	96	0	103	28	26	19	25	1.99
1233238--1233622	197	2.0	195	84	2	511	20	26	29	23	1.99
1233571--1233647	25	3.0	26	92	3	138	27	25	19	27	1.99
1233951--1234001	26	2.0	26	84	0	66	33	23	13	29	1.93
1235588--1235640	26	2.0	26	92	0	88	28	28	18	24	1.98
1235949--1236019	25	2.8	25	93	0	124	28	26	16	28	1.97
1236401--1236550	45	3.4	45	81	1	158	20	30	33	16	1.94
1237354--1237504	45	3.4	45	73	7	135	19	29	30	19	1.97
1238447--1238499	26	2.0	26	92	7	90	30	26	16	26	1.97
1238803--1238855	26	2.0	26	89	7	81	28	20	20	30	1.98
1239304--1239456	45	3.4	45	75	3	137	21	31	30	16	1.96
1240395--1240442	25	1.9	25	91	8	80	22	29	20	27	1.99
1246431--1246483	26	2.0	26	96	0	97	28	26	18	26	1.98
1246606--1246656	26	2.0	26	92	0	84	35	29	9	25	1.88
1254353--1254405	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254847--1255049	90	2.3	90	83	3	239	20	32	31	15	1.94
1254844--1255049	45	4.6	44	74	3	178	20	32	31	15	1.94
1255989--1256041	26	2.0	26	88	0	79	32	24	16	26	1.97
1256977--1257029	26	2.0	26	96	0	97	24	30	18	26	1.98
1257798--1257957	45	3.6	45	78	3	160	21	30	30	17	1.96
1259257--1259309	26	2.0	26	88	0	79	30	24	16	28	1.97
1259382--1259756	157	2.4	157	85	1	493	19	26	28	25	1.99
1260131--1260184	23	2.3	23	100	0	108	24	37	14	24	1.93
1261945--1262089	45	3.2	44	79	7	114	20	28	31	19	1.97
1262570--1262629	26	2.3	26	82	2	66	61	8	5	25	1.44
1262849--1263212	197	1.9	196	80	5	439	21	25	29	22	1.99
1263354--1263406	26	2.0	26	100	0	106	30	26	16	26	1.97
1263258--1263863	162	3.8	160	73	11	481	21	27	26	24	1.99
1263132--1263853	320	2.3	321	83	2	880	20	27	27	24	1.99
1265302--1265352	26	2.0	26	92	0	84	25	27	19	27	1.99
1266159--1266342	45	4.1	45	78	1	181	19	29	32	19	1.96
1266159--1266342	90	2.0	90	82	2	217	19	29	32	19	1.96
1266203--1266367	90	1.8	90	80	2	197	21	29	30	18	1.97
1267177--1267229	26	2.0	26	85	7	72	30	26	15	28	1.96
1267469--1267519	26	2.0	26	88	7	77	27	21	17	33	1.96
1268001--1268164	45	3.7	43	77	6	130	21	28	29	20	1.98
1269634--1269791	45	3.5	45	74	6	133	18	27	32	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270845--1270951	46	2.4	45	84	7	144	18	29	31	19	1.96
1272007--1272113	45	2.4	45	80	3	135	16	29	34	18	1.94
1272947--1273002	24	2.3	24	90	0	85	28	26	33	10	1.90
1273093--1273145	26	2.0	26	85	7	72	28	24	18	28	1.98
1273938--1274141	45	4.5	44	75	7	160	19	30	31	18	1.95
1273940--1274141	90	2.2	90	81	3	228	18	30	32	18	1.95
1274489--1274539	26	2.0	26	88	0	75	29	29	15	25	1.96
1274833--1274885	26	2.0	26	96	0	97	26	24	20	28	1.99
1275326--1275548	45	4.9	46	75	7	188	19	28	32	20	1.97
1275328--1275530	90	2.3	90	82	5	241	18	27	32	21	1.97
1275398--1275561	90	1.8	90	83	7	217	20	28	32	19	1.97
1275324--1275570	135	1.8	135	81	3	291	20	27	31	20	1.97
1276820--1276872	26	2.0	26	100	0	106	26	26	20	26	1.99
1284708--1284760	26	2.0	26	92	0	88	24	24	20	30	1.99
1285201--1285318	45	2.6	45	86	0	164	19	30	32	17	1.95
1286263--1286312	26	1.9	26	91	0	82	28	26	20	26	1.99
1286615--1286667	26	2.0	26	88	0	79	32	24	16	26	1.97
1287110--1287341	45	5.2	45	74	2	144	21	28	31	18	1.97
1287115--1287318	90	2.3	90	80	1	203	21	29	31	17	1.96
1288251--1288329	26	3.0	26	88	3	115	29	22	18	29	1.98
1288630--1288681	25	2.0	26	88	3	79	32	21	17	28	1.96
1289120--1289291	45	3.8	45	85	1	211	18	30	33	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289134--1289331	90	2.2	90	80	3	220	19	28	34	18	1.95
1290676--1290728	26	2.0	26	92	0	88	28	28	18	24	1.98
1291508--1291661	45	3.4	44	73	10	116	20	31	28	20	1.97
1291711--1291735	13	1.9	13	100	0	50	24	36	16	24	1.94
1292606--1292657	26	2.0	26	88	0	77	28	28	15	26	1.96
1292799--1292854	26	2.2	26	90	0	85	30	26	19	23	1.98
1292451--1292895	197	2.3	195	82	5	549	23	27	28	20	1.99
1293629--1293755	45	2.8	45	76	3	125	19	35	29	15	1.93
1296014--1296069	26	2.2	26	90	6	87	30	21	17	30	1.96
1296490--1296649	45	3.6	45	89	0	239	18	31	33	16	1.93
1296494--1296689	90	2.2	90	83	1	232	19	30	32	17	1.95
1297764--1297816	26	2.0	26	92	0	88	30	26	16	26	1.97
1298504--1298557	26	2.1	26	89	0	81	25	27	18	27	1.98
1298861--1298976	45	2.6	45	77	2	126	20	31	29	18	1.97
1298863--1299060	90	2.2	90	80	0	207	21	29	30	18	1.97
1299951--1300003	26	2.0	26	89	7	81	30	30	15	24	1.95
1300800--1301002	90	2.3	90	80	3	203	20	28	32	19	1.96
1300786--1301002	45	4.8	44	77	5	175	21	28	31	18	1.97
1300843--1301020	90	2.0	91	82	5	218	20	27	32	19	1.97
1300845--1301028	45	4.1	43	76	8	145	20	26	33	20	1.97
1301819--1301871	26	2.0	26	89	7	81	26	26	20	26	1.99
1302174--1302225	26	2.0	25	96	3	95	26	23	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302335--1302387	26	2.0	26	85	0	70	30	28	15	26	1.96
1301794--1302748	515	1.9	517	86	1	1371	21	27	27	23	1.99
1302689--1302741	26	2.0	26	89	7	81	28	26	18	26	1.98
1302251--1303102	354	2.4	355	88	0	1231	21	27	26	23	1.99
1303043--1303095	26	2.0	26	92	0	88	28	24	18	28	1.98
1303380--1303577	45	4.4	45	74	2	130	21	29	29	18	1.97
1305064--1305224	45	3.6	45	76	5	164	20	29	32	17	1.95
1305025--1305216	90	2.1	90	83	1	233	20	29	31	18	1.96
1304988--1305224	90	2.6	90	81	2	226	21	29	31	17	1.96
1305961--1306326	196	1.9	196	81	2	457	21	25	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120