genome.fa.s146.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  6  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553800--562524	903	9.8	899	85	4	10963	26	24	24	25	2.00
558260--558311	26	2.0	26	96	0	95	25	26	19	28	1.98
559153--559205	26	2.0	26	96	0	97	26	24	20	28	1.99
560955--561004	26	1.9	26	100	0	100	24	26	22	28	1.99
562630--562661	12	2.7	12	95	0	55	12	34	18	34	1.89
564213--564265	26	2.0	26	96	0	97	26	24	22	26	2.00
565115--565167	26	2.0	26	92	0	88	28	24	18	28	1.98
562553--572791	905	11.2	901	81	7	11068	25	25	24	25	2.00
566020--566072	26	2.0	26	92	0	88	28	28	18	24	1.98
567631--567995	158	2.3	158	83	2	473	20	29	28	21	1.98
567969--568021	26	2.0	26	92	0	88	26	22	20	30	1.98
567805--572791	901	5.6	897	85	4	6552	24	24	24	25	2.00
570648--570700	26	2.0	26	96	0	97	28	24	20	26	1.99
572426--572478	26	2.0	26	92	0	88	28	22	20	28	1.99
574702--575054	158	2.2	158	86	1	474	19	25	30	24	1.98
575028--575080	26	2.0	26	96	0	97	26	24	20	28	1.99
575926--575978	26	2.0	26	96	0	97	28	26	18	26	1.98
574859--581281	898	7.2	898	85	4	8150	25	24	24	25	2.00
576828--576880	26	2.0	26	92	0	88	28	24	18	28	1.98
579494--579546	26	2.0	26	92	0	88	28	24	20	26	1.99
583609--583661	26	2.0	26	92	0	88	26	26	22	24	2.00
582237--587789	856	6.3	879	84	4	6765	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586251--586303	26	2.0	26	96	0	97	26	26	18	28	1.98
585374--587789	902	2.7	895	87	2	3476	26	24	23	25	2.00
587151--587203	26	2.0	26	92	0	88	26	26	18	28	1.98
588565--588616	25	2.0	26	88	3	79	28	23	17	30	1.97
588590--593855	876	6.0	874	85	5	6524	25	25	24	25	2.00
591226--591277	26	2.0	26	92	0	86	32	21	17	28	1.96
590395--593855	908	3.9	894	85	5	4439	25	24	24	25	2.00
593860--600676	896	7.7	892	86	4	8512	26	24	23	25	2.00
596490--596542	26	2.0	26	88	0	79	26	24	16	32	1.97
598267--598317	26	2.0	26	96	0	93	29	25	15	29	1.96
593867--613839	900	21.9	891	76	10	14211	25	24	24	25	2.00
599169--599221	26	2.0	26	96	0	97	26	24	20	28	1.99
600804--600859	26	2.2	26	93	0	94	30	25	16	28	1.96
601881--601942	31	2.0	32	96	3	117	32	16	9	41	1.80
601166--603051	705	2.6	735	83	7	2326	27	23	22	25	2.00
603160--603214	26	2.1	26	89	0	83	32	23	18	25	1.97
604062--604111	26	1.9	26	95	0	91	24	24	22	30	1.99
604534--604590	26	2.2	26	83	0	69	56	10	7	26	1.59
602283--613839	900	12.9	898	86	3	14720	25	24	24	25	2.00
605856--605908	26	2.0	26	96	0	97	28	20	20	30	1.98
606757--606809	26	2.0	26	88	0	79	30	26	15	28	1.96
612116--612168	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613016--613068	26	2.0	26	92	0	88	26	26	20	26	1.99
614678--614730	26	2.0	26	92	0	88	26	22	20	30	1.98
616339--616392	26	2.1	26	85	0	72	24	20	20	35	1.96
618802--618854	26	2.0	26	96	0	97	28	20	24	26	1.99
620589--620641	26	2.0	26	96	0	97	26	18	26	28	1.98
617679--625079	903	8.3	896	84	4	9346	25	24	25	25	2.00
623253--623305	26	2.0	26	96	0	97	24	20	28	26	1.99
624155--624207	26	2.0	26	96	0	97	26	18	26	28	1.98
627362--627414	26	2.0	26	96	0	97	26	18	26	28	1.98
628059--628090	12	2.7	12	95	0	55	34	18	34	12	1.89
629014--629066	26	2.0	26	88	0	79	30	22	22	24	1.99
630790--630842	26	2.0	26	96	0	97	28	20	24	26	1.99
631685--631734	26	1.9	26	91	0	82	30	20	24	26	1.98
632583--632635	26	2.0	26	96	0	97	28	20	26	24	1.99
628261--636408	908	9.1	902	85	3	10359	25	24	25	25	2.00
636418--641181	903	5.4	891	86	3	6078	25	24	24	25	2.00
638547--638599	26	2.0	26	92	0	88	26	22	24	26	2.00
640457--643709	809	3.9	804	86	6	3704	24	24	24	26	2.00
643683--643735	26	2.0	26	96	0	97	26	20	24	28	1.99
644557--644609	26	2.0	26	92	0	88	26	20	26	26	1.99
642114--646274	865	4.7	868	85	6	4972	24	24	24	25	2.00
645462--645514	26	2.0	26	85	0	70	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647054--647105	26	2.0	26	92	0	86	25	19	26	28	1.98
647930--647982	26	2.0	26	92	0	88	28	15	24	32	1.95
646334--648750	889	2.7	872	86	3	3349	24	22	25	26	2.00
648735--648763	11	2.6	11	100	0	58	10	31	41	17	1.83
648844--648896	26	2.0	26	92	0	88	28	16	26	28	1.97
649587--649639	26	2.0	26	92	0	88	28	16	26	28	1.97
648115--650392	743	3.1	743	91	1	3569	25	23	24	26	2.00
650330--650381	26	2.0	26	92	0	86	26	21	25	26	1.99
651219--651271	26	2.0	26	89	7	81	24	16	26	32	1.97
652834--652886	26	2.0	26	96	0	97	26	18	26	28	1.98
653801--656652	888	3.2	878	85	5	3670	24	24	25	24	2.00
656461--656845	210	1.8	206	83	3	511	22	27	31	19	1.97
657445--657497	26	2.0	26	88	0	79	28	18	26	26	1.98
658333--658385	26	2.0	26	89	7	81	26	16	28	28	1.97
658518--658570	26	2.0	26	89	7	81	30	18	24	26	1.98
658309--658729	185	2.3	185	83	0	509	24	26	26	22	2.00
659400--659452	26	2.0	26	89	7	81	28	16	26	28	1.97
659376--659794	185	2.3	185	80	0	453	24	26	26	22	2.00
661119--661171	26	2.0	26	92	0	88	24	16	24	33	1.96
662022--662074	26	2.0	26	96	0	97	26	18	26	28	1.98
661072--667438	898	7.1	898	86	3	8448	25	24	24	25	2.00
662920--662972	26	2.0	26	96	0	97	28	20	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663814--663866	26	2.0	26	100	0	106	26	16	26	30	1.97
664714--667422	902	3.0	897	87	3	3839	25	24	25	25	2.00
666485--666537	26	2.0	26	96	0	97	24	20	28	26	1.99
669453--669505	26	2.0	26	92	0	88	24	18	30	26	1.98
670349--670709	159	2.3	158	81	3	384	24	29	26	20	1.99
671392--671445	26	2.1	26	92	0	90	27	18	25	27	1.98
672295--672346	26	2.0	26	96	0	95	26	17	26	28	1.97
670514--674007	905	3.9	904	86	2	4614	25	24	24	25	2.00
673473--674516	529	2.0	528	90	1	1644	26	20	22	30	1.98
676288--676340	26	2.0	26	85	0	70	30	16	24	28	1.97
676378--676608	117	2.0	117	83	5	297	22	25	28	24	1.99
676986--677037	26	2.0	26	100	0	104	26	19	26	26	1.99
678844--678894	26	2.0	26	92	0	84	29	13	27	29	1.94
679054--684143	894	5.6	900	86	4	6326	25	23	25	26	2.00
681489--681541	26	2.0	26	96	0	97	26	22	26	24	2.00
682407--682459	26	2.0	26	92	7	90	30	18	26	24	1.98
683303--683381	26	3.0	26	98	0	149	27	20	25	26	1.99
685477--685581	26	4.0	26	91	0	174	29	20	24	25	1.99
685477--685581	52	2.0	52	96	0	192	29	20	24	25	1.99
687288--687392	26	4.0	26	91	0	174	29	20	24	25	1.99
687288--687392	52	2.0	52	96	0	192	29	20	24	25	1.99
685552--695358	902	11.0	875	83	5	10796	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689098--689149	26	2.0	26	100	0	104	26	19	26	26	1.99
690000--690052	26	2.0	26	85	0	70	28	18	22	30	1.98
690891--690942	26	2.0	25	92	3	86	26	19	25	28	1.98
691775--691827	26	2.0	26	96	0	97	26	22	24	26	2.00
692681--692733	26	2.0	26	92	0	88	28	22	22	26	1.99
693583--693635	26	2.0	26	96	0	97	26	18	26	28	1.98
694482--694533	26	2.0	26	96	0	95	26	17	26	28	1.97
696692--697075	163	2.4	162	81	6	417	23	29	28	18	1.98
697723--697775	26	2.0	26	88	0	79	28	16	24	30	1.97
698997--699049	26	2.0	26	85	7	72	30	15	24	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120