genome.fa.s146.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  24  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2704417--2704469	26	2.0	26	92	0	88	28	24	18	28	1.98
2704923--2705038	45	2.6	45	78	0	124	21	32	29	16	1.95
2705159--2705183	13	1.9	13	100	0	50	24	36	16	24	1.94
2706413--2706465	26	2.0	26	89	7	81	32	26	15	26	1.95
2706524--2706788	144	1.8	144	84	3	363	14	28	29	27	1.95
2707087--2707232	45	3.2	45	79	0	157	19	32	30	18	1.96
2708668--2708812	45	3.2	45	80	3	148	19	31	30	19	1.96
2710112--2710164	26	2.0	26	92	0	88	28	28	18	24	1.98
2710602--2710689	45	2.0	45	84	4	115	19	35	29	15	1.93
2711646--2711698	26	2.0	26	85	0	70	28	28	18	24	1.98
2711997--2712049	26	2.0	26	92	0	88	32	24	15	28	1.95
2712424--2712629	45	4.6	45	78	1	180	21	29	30	18	1.97
2712427--2712661	90	2.6	91	80	7	257	21	29	30	18	1.97
2713570--2713622	26	2.0	26	92	0	88	30	26	18	24	1.98
2713915--2713965	26	2.0	26	88	7	77	31	23	13	31	1.93
2714409--2714566	45	3.5	45	74	5	131	18	28	32	20	1.96
2715501--2715553	26	2.0	26	92	0	88	26	26	20	26	1.99
2715852--2715907	26	2.2	26	93	0	94	30	23	17	28	1.97
2716348--2716552	45	4.6	45	79	2	205	19	29	33	18	1.95
2716350--2716552	90	2.3	90	85	1	264	18	29	33	18	1.95
2716668--2716720	26	2.0	26	92	0	88	28	28	20	22	1.99
2717284--2717386	46	2.3	46	81	5	120	18	28	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2717284--2717399	45	2.5	45	77	9	119	19	25	30	24	1.98
2720173--2720373	45	4.5	45	76	3	208	19	30	32	17	1.95
2720165--2720417	135	1.9	136	80	4	296	21	29	32	16	1.96
2720407--2720437	14	2.2	14	94	0	53	25	12	32	29	1.93
2720891--2720943	26	2.0	26	92	0	88	26	26	20	26	1.99
2720776--2721142	196	1.9	196	84	2	495	21	29	26	22	1.99
2721408--2721460	26	2.0	26	96	0	97	30	24	18	26	1.98
2721906--2722058	45	3.4	45	83	0	180	18	32	32	16	1.94
2721906--2722070	90	1.8	90	82	2	215	19	32	31	16	1.94
2722997--2723049	26	2.0	26	96	0	97	26	24	20	28	1.99
2724738--2724796	28	2.2	28	85	8	79	49	0	0	50	1.00
2724837--2724896	27	2.4	25	78	13	61	51	0	1	46	1.10
2726039--2726076	17	2.2	17	86	9	51	42	0	2	55	1.14
2727039--2727105	23	2.8	25	80	6	77	43	4	2	49	1.38
2727271--2727309	14	2.6	15	84	12	53	41	0	5	53	1.23
2727323--2727385	22	2.7	23	80	19	76	50	0	0	49	1.00
2727323--2727390	16	4.2	16	68	19	52	51	0	0	48	1.00
2727964--2727990	14	1.9	14	100	0	54	51	0	7	40	1.30
2728236--2728284	22	2.2	21	89	7	71	55	0	0	44	0.99
2728243--2728324	32	2.6	31	74	12	78	56	3	0	40	1.17
2729024--2729075	18	2.8	19	77	14	63	50	0	3	46	1.20
2729225--2729280	18	3.1	18	80	7	69	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2729150--2729333	98	1.9	98	79	11	209	51	2	1	44	1.23
2729437--2729519	35	2.4	33	84	11	96	51	4	0	43	1.23
2730042--2730106	30	2.3	27	75	17	69	53	6	4	35	1.46
2730148--2730239	47	1.9	46	81	16	107	52	1	3	43	1.24
2730621--2730684	22	2.8	22	77	11	58	46	3	0	50	1.17
2731674--2732120	180	2.5	179	77	4	472	38	7	10	43	1.68
2732416--2733978	180	8.8	179	74	10	1110	41	9	8	40	1.68
2734086--2734148	4	16.2	4	73	12	51	50	1	1	46	1.20
2734086--2734130	11	4.1	11	80	11	56	48	2	0	48	1.13
2734088--2734148	18	3.4	19	86	8	83	50	1	1	45	1.21
2734197--2734222	12	2.2	12	100	0	52	42	0	0	57	0.98
2734609--2734696	16	5.7	15	71	20	56	46	7	1	44	1.40
2734888--2734927	17	2.3	18	86	4	55	47	2	0	50	1.14
2735004--2735043	19	2.0	20	86	13	57	55	0	0	45	0.99
2734968--2735039	21	3.3	21	73	13	65	54	1	1	43	1.17
2734964--2735088	45	2.7	46	77	14	114	52	4	0	43	1.26
2735492--2735534	18	2.5	17	85	14	61	41	0	4	53	1.21
2735490--2735530	16	2.5	17	84	11	50	46	0	4	48	1.23
2735781--2735814	16	2.1	16	94	0	59	55	0	0	44	0.99
2735830--2735901	15	4.7	15	75	17	51	41	1	5	51	1.34
2736320--2736359	21	1.9	21	84	0	53	42	2	5	50	1.37
2736350--2736386	13	2.8	13	91	4	56	45	0	2	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2736903--2736938	15	2.5	15	90	4	56	50	5	2	41	1.40
2736975--2737048	29	2.6	28	79	10	78	52	1	2	43	1.23
2737130--2737175	16	3.0	16	81	9	60	47	2	4	45	1.34
2738578--2738643	26	2.4	27	75	12	64	46	1	0	51	1.10
2738596--2738633	17	2.3	16	86	4	58	52	0	0	47	1.00
2738580--2738628	21	2.3	22	79	13	57	48	0	0	51	1.00
2739356--2739430	30	2.5	30	81	10	91	50	5	0	44	1.24
2739595--2739662	23	3.1	22	79	14	70	54	1	0	44	1.09
2739607--2739712	17	5.9	17	67	15	54	49	0	0	49	1.14
2739665--2739743	30	2.6	30	79	15	74	46	0	2	50	1.14
2740715--2740799	28	3.1	28	70	14	77	49	2	2	45	1.27
2740891--2740935	15	2.8	16	87	12	58	51	0	0	48	1.00
2740891--2740971	14	5.7	14	73	20	62	49	1	0	49	1.08
2740941--2740988	21	2.3	21	85	0	60	47	2	0	50	1.12
2741088--2741145	27	2.1	28	84	9	75	39	1	5	53	1.33
2741259--2741312	23	2.2	24	84	15	76	42	1	0	55	1.10
2741917--2741976	31	1.9	32	86	10	88	48	0	0	51	1.00
2743204--2743807	181	3.3	180	81	3	674	41	8	9	40	1.68
2742748--2743668	466	2.0	456	79	7	995	39	7	10	41	1.69
2743563--2744111	304	1.8	304	84	3	764	41	9	10	37	1.72
2744086--2744118	18	1.9	17	88	11	50	42	6	12	39	1.67
2743844--2744484	181	3.5	180	77	7	546	43	9	10	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2744657--2744911	127	2.0	127	97	0	483	37	6	10	45	1.64
2744973--2745672	362	1.9	362	83	1	902	39	7	11	42	1.68
2744940--2745696	181	4.2	181	81	1	789	39	8	10	41	1.70
2745597--2745814	119	1.8	121	82	2	287	44	10	12	32	1.75
2745032--2746305	661	1.9	661	82	4	1566	41	8	11	38	1.72
2745939--2745971	18	1.9	17	88	11	50	42	6	12	39	1.67
2745699--2746306	181	3.4	177	78	8	588	42	9	10	36	1.73
2746368--2747818	181	8.1	180	76	6	1058	42	9	7	40	1.66
2747533--2748096	308	1.8	309	80	4	674	40	11	7	40	1.70
2748390--2748799	176	2.3	177	80	6	429	38	10	9	41	1.72
2747822--2748799	181	5.4	177	74	9	646	40	10	8	41	1.68
2748743--2748775	18	1.9	17	88	11	50	39	6	6	48	1.53
2750722--2750906	45	4.1	45	76	6	169	18	33	30	17	1.94
2750688--2750885	90	2.2	89	81	7	229	17	33	31	17	1.94
2751213--2751508	159	1.9	158	80	7	357	24	29	27	18	1.98
2751544--2751596	26	2.0	26	92	0	88	26	20	26	26	1.99
2757566--2757722	45	3.5	44	82	3	197	15	34	31	17	1.92
2758165--2758217	26	2.0	26	88	0	79	30	18	22	28	1.98
2759501--2759665	45	3.7	45	76	1	125	20	31	29	19	1.97
2762377--2762429	26	2.0	26	89	7	81	24	16	28	30	1.97
2762405--2762792	170	2.3	170	79	5	392	23	27	27	21	1.99
2769236--2769348	45	2.5	44	81	5	111	21	30	28	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2769248--2769368	45	2.7	45	78	5	111	19	28	32	19	1.96
2770392--2770443	26	2.0	26	88	0	77	26	17	26	28	1.97
2770992--2771286	159	1.9	158	82	3	369	24	29	27	17	1.98
2770960--2771802	355	2.4	355	81	2	978	25	27	26	20	1.99
2772205--2772308	45	2.3	45	74	0	109	20	30	29	19	1.97
2772680--2772732	26	2.0	26	92	0	88	22	16	28	32	1.96
2779530--2779582	26	2.0	26	92	0	88	28	18	24	28	1.98
2780842--2780999	45	3.5	45	72	11	135	20	32	27	18	1.97
2781414--2781463	26	1.9	26	91	0	82	32	18	24	26	1.97
2781771--2781825	26	2.1	26	96	0	101	21	18	30	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120