genome.fa.s146.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  61  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6830585--6830696	47	2.4	44	74	18	102	48	1	0	49	1.18
6831008--6831057	17	2.9	17	80	13	57	48	0	2	50	1.12
6831012--6831064	18	3.0	18	78	8	56	49	0	1	49	1.12
6831136--6831197	27	2.3	28	86	10	85	51	3	3	41	1.34
6831397--6831441	22	2.1	22	91	4	74	51	2	4	42	1.34
6832326--6832373	23	2.1	23	84	7	62	47	4	0	47	1.21
6832972--6833036	19	3.6	18	78	12	62	46	9	3	41	1.51
6833957--6834000	17	2.6	18	82	7	56	56	0	0	43	0.99
6834541--6834603	14	4.5	14	69	21	51	46	0	1	52	1.10
6834885--6834940	26	2.1	27	83	9	71	44	1	0	53	1.11
6834926--6834993	27	2.4	28	73	11	68	36	1	4	57	1.28
6834932--6834991	26	2.3	26	80	8	77	38	1	5	55	1.32
6834946--6834987	13	3.2	13	77	16	50	35	0	4	59	1.19
6835338--6835403	28	2.3	27	89	7	96	27	7	13	51	1.68
6835469--6835556	23	3.8	23	72	13	65	47	1	4	46	1.30
6835637--6835677	21	1.9	22	85	5	57	39	0	2	58	1.11
6836130--6836199	34	2.1	35	84	12	94	47	4	0	48	1.21
6836227--6836660	177	2.4	177	79	6	464	43	6	9	40	1.64
6836450--6836482	18	1.9	17	88	11	50	48	3	6	42	1.43
6836507--6836847	179	1.9	177	82	5	420	42	8	9	39	1.68
6836151--6836908	181	4.2	176	76	8	593	42	7	9	41	1.65
6836994--6837030	19	1.9	19	89	10	58	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6838819--6838887	36	2.0	34	88	5	102	40	5	1	52	1.34
6840239--6840502	145	1.8	145	82	9	342	43	10	7	38	1.69
6840375--6840781	182	2.2	179	80	6	435	38	9	8	42	1.69
6841321--6841406	25	3.7	24	71	18	65	45	3	0	51	1.18
6841499--6841551	17	3.1	17	79	12	56	54	1	0	43	1.11
6841501--6841554	22	2.5	22	85	8	67	55	1	0	42	1.10
6841631--6841655	13	1.9	13	100	0	50	40	8	0	52	1.31
6841829--6841865	14	2.8	14	84	8	51	56	0	0	43	0.99
6842012--6842061	18	2.7	18	73	14	57	44	0	0	56	0.99
6842012--6842087	37	2.1	37	83	9	95	44	0	1	53	1.08
6842220--6842258	18	2.2	18	85	0	51	51	0	5	43	1.24
6842648--6842717	16	4.2	17	73	14	58	47	0	2	50	1.16
6842642--6842722	23	3.4	23	69	16	67	46	0	2	50	1.14
6842770--6842821	13	4.2	12	77	18	54	53	5	1	38	1.36
6842814--6842945	6	22.2	6	67	22	57	43	0	3	51	1.25
6843432--6843756	177	1.8	177	80	3	395	42	8	10	38	1.69
6844066--6844113	12	4.0	12	76	7	53	52	0	0	47	1.00
6844064--6844113	18	2.8	18	75	6	57	52	0	0	48	1.00
6845099--6845140	22	2.0	21	85	4	57	47	2	0	50	1.14
6845153--6845205	17	3.2	17	78	5	54	49	1	1	47	1.23
6845257--6845317	27	2.2	26	80	13	61	47	3	3	45	1.35
6845332--6845403	32	2.2	33	85	9	96	48	1	2	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6845374--6845418	21	2.1	21	84	8	56	53	0	0	46	1.00
6845330--6845431	29	3.2	30	76	19	84	50	0	1	46	1.19
6845332--6845428	32	3.0	32	79	11	92	51	1	2	45	1.19
6845360--6845446	15	6.0	14	68	12	52	52	1	1	44	1.15
6845521--6845571	27	1.9	26	84	11	68	50	3	0	45	1.20
6845624--6845662	19	2.1	19	85	9	53	38	0	0	61	0.96
6845707--6845749	21	2.0	21	81	0	50	51	0	2	46	1.13
6846701--6846873	85	2.0	83	79	11	183	46	2	0	49	1.20
6846878--6846930	17	3.1	17	79	12	56	54	1	0	43	1.11
6846880--6846935	22	2.6	23	86	8	73	55	1	0	42	1.10
6847067--6847091	13	1.9	13	100	0	50	40	8	0	52	1.31
6847117--6847179	21	3.0	21	77	15	60	47	3	6	42	1.44
6847632--6847677	21	2.1	23	92	8	78	50	0	4	45	1.21
6848547--6848579	18	1.9	17	88	11	50	48	3	6	42	1.43
6848938--6849025	21	4.3	21	66	18	51	51	1	1	46	1.15
6849501--6849587	35	2.5	33	80	14	88	45	0	2	51	1.13
6849711--6849768	29	2.1	26	81	15	64	46	1	1	50	1.22
6850987--6851040	15	3.1	18	75	24	62	50	0	0	50	1.00
6850990--6851052	19	3.5	19	79	14	62	50	1	0	47	1.10
6851272--6851326	23	2.5	22	83	13	69	49	0	1	49	1.11
6851370--6851432	27	2.3	26	83	5	72	49	3	3	44	1.34
6851407--6851441	16	2.3	15	90	5	52	54	2	5	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6851527--6851556	15	2.0	15	93	0	51	50	0	0	50	1.00
6851598--6851648	26	1.9	27	88	11	79	49	1	0	49	1.12
6851595--6851657	26	2.5	24	76	23	67	50	1	0	47	1.10
6852049--6852080	14	2.4	14	94	5	57	50	0	0	50	1.00
6852133--6852187	27	2.0	29	82	13	71	50	1	1	45	1.22
6852291--6852359	29	2.4	27	83	7	84	40	1	2	55	1.24
6852957--6852989	18	1.9	17	88	11	50	48	3	6	42	1.43
6853028--6853068	17	2.4	18	80	19	52	41	12	4	41	1.64
6853348--6853439	21	4.3	21	66	17	55	51	1	1	46	1.15
6853915--6854001	35	2.6	35	84	10	103	45	0	2	51	1.13
6854126--6854183	29	2.1	29	81	15	70	48	1	0	50	1.11
6855406--6855459	18	3.1	16	80	20	56	51	0	0	48	1.00
6855406--6855448	15	2.8	15	86	10	52	53	0	0	46	1.00
6855431--6855474	19	2.4	18	81	7	52	52	2	0	45	1.13
6855691--6855745	23	2.5	22	83	13	69	49	0	1	49	1.11
6855789--6855851	27	2.3	26	83	5	72	50	1	3	44	1.27
6855826--6855860	16	2.3	15	90	5	52	57	0	5	37	1.23
6855947--6855978	8	4.1	8	96	4	57	53	0	0	46	1.00
6856020--6856070	26	1.9	27	88	11	79	49	1	0	49	1.12
6856017--6856079	26	2.5	24	76	23	67	50	1	0	47	1.10
6856472--6856503	14	2.4	14	94	5	57	50	0	0	50	1.00
6856556--6856610	27	2.0	29	82	13	71	50	1	1	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6856715--6856771	28	1.9	31	86	10	84	36	0	3	59	1.14
6856714--6856783	29	2.4	28	81	9	79	40	1	2	55	1.23
6857200--6857330	66	2.0	66	86	10	187	41	6	16	35	1.74
6857295--6857892	181	3.4	178	77	8	592	41	8	9	40	1.68
6858166--6858209	14	3.1	14	81	12	54	45	0	0	54	0.99
6858179--6858223	23	1.9	24	81	4	56	48	4	0	46	1.22
6858604--6858702	51	1.9	51	87	0	144	37	11	7	44	1.67
6858682--6859386	371	1.9	368	80	5	821	41	8	8	40	1.66
6859684--6859726	22	1.9	23	85	4	61	51	4	6	37	1.50
6859708--6859750	19	2.2	20	87	4	61	48	2	0	48	1.14
6860476--6860548	19	3.5	20	72	20	60	47	1	1	49	1.18
6860641--6860677	17	2.2	17	90	0	56	37	2	0	59	1.12
6860855--6860890	18	2.1	17	89	5	54	47	0	5	47	1.25
6860900--6860942	19	2.2	20	80	12	54	48	0	0	51	1.00
6860907--6860943	19	2.0	18	89	5	56	45	0	0	54	1.00
6860970--6861019	26	2.0	25	84	11	66	58	0	4	38	1.17
6860992--6861045	20	2.8	20	81	10	51	62	0	5	31	1.18
6861992--6862032	15	2.7	16	85	7	50	46	0	2	51	1.14
6862347--6862380	16	2.1	17	94	5	61	55	0	0	44	0.99
6864158--6864589	180	2.4	180	84	6	570	40	7	9	42	1.66
6864780--6865818	523	2.0	524	80	7	1178	41	8	9	40	1.67
6865312--6867700	180	13.3	181	76	9	1693	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6867614--6867786	87	2.0	86	90	1	274	41	6	5	47	1.51
6867722--6877525	181	54.0	179	70	11	3532	40	8	10	41	1.68
6869823--6870211	207	1.9	203	82	7	482	39	7	11	41	1.70
6873041--6873077	18	2.0	19	89	5	58	40	2	0	56	1.13
6872740--6880726	181	44.3	180	70	11	2971	39	7	10	42	1.68
6872729--6879839	899	7.9	884	73	11	3543	39	7	10	42	1.68
6872749--6894455	719	30.3	715	70	12	5996	39	8	10	41	1.68
6877470--6877560	35	2.6	35	96	0	164	29	9	16	43	1.80
6877982--6878299	156	2.0	156	87	1	449	37	9	9	43	1.70
6878172--6889515	542	21.3	535	71	11	2857	39	8	10	41	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120