genome.fa.s146.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  105  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14949762--14949865	22	5.3	20	69	27	71	51	10	6	30	1.62
14949656--14949856	110	1.8	110	87	6	300	54	10	5	29	1.58
14949775--14949845	35	2.1	32	84	7	88	53	11	7	28	1.62
14949810--14949864	23	2.6	22	83	13	71	54	10	5	29	1.57
14949645--14949864	55	4.0	54	82	8	266	53	10	6	29	1.61
14949771--14949959	55	3.5	54	76	18	157	53	9	5	31	1.57
14949648--14949909	110	2.4	105	80	11	280	52	10	6	29	1.62
14949832--14949893	31	2.0	31	93	0	106	51	12	6	29	1.65
14949906--14949943	14	2.5	15	83	8	51	60	5	0	34	1.19
14949777--14949940	83	1.9	83	87	6	240	53	9	6	30	1.58
14951198--14951244	16	3.0	16	84	9	53	40	4	2	53	1.32
14952531--14953162	314	2.0	314	99	0	1237	33	17	9	40	1.81
14954276--14954302	2	13.5	2	100	0	54	48	0	0	51	1.00
14955952--14955995	19	2.2	21	88	8	65	61	2	0	36	1.09
14956641--14956692	20	2.6	19	77	14	52	51	1	0	46	1.12
14961873--14961910	18	2.1	18	95	0	67	26	23	0	50	1.50
14961560--14962236	347	2.0	347	95	0	1219	27	22	6	43	1.78
14965227--14965259	13	2.5	13	95	0	57	81	0	3	15	0.80
14966328--14966368	15	2.8	15	82	13	50	36	0	0	63	0.95
14967271--14967325	27	2.0	27	92	0	92	34	7	21	36	1.81
14967373--14967407	18	1.9	18	94	0	61	20	17	20	42	1.89
14967616--14967679	25	2.6	25	85	2	85	20	20	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14968140--14968305	85	2.0	85	83	4	210	24	13	21	40	1.89
14968174--14968473	85	3.5	84	74	3	199	23	16	21	39	1.92
14970066--14970233	15	11.0	15	67	18	71	21	1	30	46	1.59
14970069--14970168	14	6.8	14	69	10	65	19	1	32	48	1.56
14970065--14970232	16	11.0	15	66	14	76	21	1	31	45	1.59
14970126--14970228	47	2.2	45	81	10	125	22	0	31	45	1.59
14971309--14971339	16	1.9	16	93	0	53	0	9	16	74	1.07
14971667--14971721	9	5.7	9	82	16	65	5	0	7	87	0.68
14971667--14971713	22	2.2	20	92	7	76	4	0	8	87	0.67
14972127--14972259	34	3.9	34	70	7	108	48	14	17	19	1.80
14972125--14972989	209	4.2	209	84	3	1069	48	12	17	21	1.80
14972616--14972874	34	7.6	34	69	10	127	50	12	16	20	1.77
14972125--14972986	102	8.3	102	85	2	1010	48	12	17	21	1.80
14972725--14972908	34	5.4	33	71	13	106	48	15	17	17	1.81
14972966--14973057	38	2.5	36	77	5	96	43	14	20	21	1.87
14973228--14973424	39	5.2	39	68	16	114	48	10	19	20	1.78
14973196--14973420	74	3.0	74	73	11	208	48	9	20	21	1.78
14973461--14973754	110	2.7	109	82	4	333	37	17	21	22	1.94
14973713--14973778	22	3.0	22	84	0	87	28	18	27	25	1.98
14973604--14973876	132	2.1	134	84	2	354	36	18	22	22	1.95
14973849--14973922	22	3.3	22	67	16	62	24	17	27	31	1.97
14974066--14974167	41	2.5	41	88	4	145	31	13	17	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14975901--14975957	20	2.7	21	76	17	64	3	8	3	84	0.86
14976497--14976529	9	3.8	9	88	8	50	3	6	0	90	0.52
14976496--14976529	17	2.0	17	94	0	59	2	8	0	88	0.62
14981233--14981334	15	6.9	15	67	21	54	20	0	31	48	1.50
14981235--14981334	14	6.8	14	68	15	58	20	0	32	48	1.50
14981233--14981324	16	6.1	15	67	13	55	20	0	30	48	1.50
14981272--14981391	47	2.6	45	79	10	134	21	1	31	45	1.62
14982703--14982727	11	2.3	11	100	0	50	8	8	56	28	1.57
14982877--14982909	3	11.0	3	100	0	66	33	0	0	66	0.92
14984397--14984461	29	2.2	30	86	5	87	50	0	1	47	1.10
14984403--14984463	14	4.3	14	78	12	70	54	0	1	44	1.10
14984945--14984979	13	2.6	13	90	4	52	34	0	5	60	1.21
14987775--14987852	37	2.1	37	97	0	147	43	5	32	19	1.73
14990665--14990698	16	2.1	16	88	0	50	38	5	11	44	1.65
14990734--14990758	6	4.2	6	100	0	50	64	0	16	20	1.30
14992523--14992556	16	2.1	16	94	0	59	50	2	20	26	1.63
14993460--14993506	12	3.6	13	80	8	51	46	0	2	51	1.13
14994698--14995518	85	9.7	85	74	5	434	24	14	19	41	1.89
14994784--14995518	170	4.3	171	75	5	544	24	14	20	41	1.89
14994683--14995251	255	2.2	253	79	4	592	24	14	19	42	1.87
14995450--14995593	61	2.4	61	85	3	184	20	15	25	38	1.91
14997196--14997221	3	8.7	3	100	0	52	30	34	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14997598--14997623	13	2.0	13	100	0	52	53	0	0	46	1.00
14997976--14998014	18	2.2	18	86	4	53	82	0	5	12	0.83
14997970--14998015	18	2.5	19	79	10	51	82	2	4	10	0.89
14998244--14998368	50	2.4	52	77	9	130	54	6	12	27	1.61
15002383--15002460	37	2.1	37	97	0	147	43	5	32	19	1.73
15005748--15005802	24	2.2	25	87	3	76	12	5	3	78	1.06
15005889--15005994	20	5.2	20	70	15	83	25	3	2	67	1.21
15005795--15005981	13	14.5	13	67	21	67	27	3	3	64	1.27
15005889--15005996	41	2.6	42	78	14	116	25	3	2	68	1.19
15005990--15006035	20	2.3	20	88	3	67	13	6	6	73	1.22
15005950--15006016	21	3.1	21	75	12	64	17	4	4	73	1.18
15005989--15006036	19	2.5	20	83	6	64	14	8	6	70	1.31
15006934--15007016	5	16.6	5	73	22	52	16	4	1	77	1.01
15007012--15007419	59	7.1	58	85	6	483	44	7	12	36	1.69
15007021--15007419	117	3.4	115	84	7	470	45	7	12	35	1.69
15007159--15007248	27	3.1	27	64	23	67	42	7	13	36	1.73
15007034--15007421	58	6.7	56	85	7	447	44	6	12	35	1.69
15007456--15007480	13	1.9	13	100	0	50	12	0	0	88	0.53
15012620--15012725	43	2.5	42	78	10	115	36	12	16	33	1.87
15012994--15013185	41	4.7	40	89	5	244	25	17	20	36	1.94
15013159--15013210	25	2.1	25	100	0	104	26	17	21	34	1.95
15013118--15013251	66	2.0	66	94	2	234	24	16	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15013184--15013575	41	9.5	41	90	2	563	23	17	22	36	1.95
15013078--15013292	107	2.0	106	92	4	362	23	17	23	35	1.95
15013036--15013497	148	3.0	147	85	8	552	24	17	22	35	1.95
15013184--15013575	83	4.7	82	90	2	590	23	17	22	36	1.95
15013788--15013829	12	3.5	12	75	12	50	11	4	4	78	1.06
15013864--15013952	29	2.8	33	79	14	82	30	4	3	61	1.32
15013913--15013967	14	3.7	15	80	11	60	29	1	1	67	1.11
15013873--15014024	21	6.8	20	70	19	81	26	4	2	66	1.24
15014027--15014071	20	2.2	20	96	0	81	11	8	8	71	1.32
15014958--15015042	5	17.8	5	73	22	60	16	4	1	77	0.99
15014958--15015040	17	4.6	17	76	22	73	15	4	1	78	0.98
15014962--15015039	13	6.4	11	76	12	57	15	5	1	78	0.99
15014958--15015040	8	10.4	8	71	13	55	15	4	1	78	0.98
15015054--15015620	58	9.7	57	85	6	640	45	6	12	35	1.68
15015053--15015620	117	4.8	116	81	8	666	45	6	12	35	1.68
15015654--15015687	13	2.7	12	86	13	50	11	2	0	85	0.71
15019092--15019134	20	2.2	20	100	0	86	18	20	9	51	1.74
15021194--15021227	16	2.1	16	94	0	59	50	2	20	26	1.63
15022133--15022179	12	3.6	13	80	8	51	46	0	2	51	1.13
15023348--15024096	85	8.8	85	73	6	448	24	14	19	41	1.88
15023362--15024181	170	4.8	171	74	5	551	24	14	20	41	1.89
15023343--15023914	255	2.2	253	79	4	596	24	14	19	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15023360--15024183	85	9.7	84	73	6	349	24	14	20	41	1.89
15024113--15024256	61	2.4	61	85	3	184	20	15	25	38	1.91
15026261--15026286	13	2.0	13	100	0	52	53	0	0	46	1.00
15031041--15031118	37	2.1	37	97	0	147	43	5	32	19	1.73
15033913--15033946	16	2.1	16	88	0	50	38	5	11	44	1.65
15033982--15034006	6	4.2	6	100	0	50	64	0	16	20	1.30
15040331--15040366	12	3.1	12	92	4	56	50	2	0	47	1.15
15041402--15041455	28	1.9	28	84	0	72	29	7	25	37	1.83
15041589--15042491	85	10.6	85	74	6	436	24	14	19	41	1.89
15041567--15042243	255	2.7	254	77	2	586	24	13	19	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120