genome.fa.s146.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  53  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6099520--6102463	883	3.3	879	82	7	3524	25	25	24	25	2.00
6099819--6102347	873	2.9	873	84	5	2922	25	25	23	25	2.00
6102261--6102860	310	1.9	310	85	4	816	18	26	31	23	1.98
6103108--6103152	23	1.9	23	81	4	54	57	8	6	26	1.54
6103537--6103586	26	1.9	26	91	0	82	26	26	16	32	1.96
6104424--6104476	26	2.0	26	96	0	97	26	24	20	28	1.99
6107080--6107132	26	2.0	26	92	0	88	28	24	18	28	1.98
6104495--6109911	896	6.1	900	86	4	7251	25	24	24	25	2.00
6108870--6108922	26	2.0	26	92	0	88	28	24	18	28	1.98
6109765--6109817	26	2.0	26	88	0	79	30	28	16	24	1.97
6110411--6110703	117	2.5	116	84	9	380	35	12	7	44	1.71
6110409--6110703	58	5.0	58	83	8	357	35	12	7	44	1.72
6110711--6110767	14	4.2	14	76	12	57	77	1	7	14	1.06
6110754--6110793	17	2.4	16	84	8	53	72	0	5	22	1.04
6111184--6111223	20	2.0	20	85	0	53	17	17	25	40	1.91
6111719--6111748	9	3.3	9	90	0	51	76	0	0	23	0.78
6111722--6111771	17	3.1	17	83	11	61	68	0	0	32	0.90
6111722--6111771	20	2.5	20	87	9	68	68	0	0	32	0.90
6111808--6111863	4	13.8	4	75	17	53	71	1	1	25	1.05
6111818--6111875	26	2.3	26	77	19	68	68	3	1	25	1.14
6111812--6111873	12	5.1	11	78	16	52	70	3	1	24	1.10
6111861--6111913	20	2.5	22	74	20	58	77	7	7	7	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6112076--6112118	9	4.8	9	82	0	59	0	2	13	83	0.74
6112129--6112414	43	6.7	42	79	14	284	33	25	17	22	1.96
6113724--6113753	11	2.7	11	94	0	51	0	13	0	86	0.57
6113739--6113783	21	2.3	19	81	11	54	6	20	0	73	1.05
6113697--6113787	30	3.0	30	73	12	78	6	20	0	72	1.07
6117818--6117875	14	4.2	14	80	8	66	79	1	6	12	1.00
6117862--6117901	17	2.4	16	84	8	53	72	0	5	22	1.04
6118915--6118962	3	14.7	3	83	12	51	66	0	0	33	0.92
6118918--6119060	10	13.8	10	69	23	75	66	2	1	29	1.14
6118915--6119070	16	9.9	16	69	22	100	66	3	1	28	1.15
6118924--6119061	4	34.5	4	69	20	60	66	2	1	28	1.14
6118914--6119070	25	6.3	27	67	24	76	66	3	1	28	1.14
6118978--6119071	39	2.4	39	75	22	99	69	4	1	25	1.13
6118914--6119073	27	5.8	27	67	19	91	66	3	1	28	1.14
6119926--6119978	26	2.0	26	96	0	97	28	26	18	26	1.98
6119199--6131993	902	14.4	899	82	5	14652	25	24	23	25	2.00
6125262--6125314	26	2.0	26	96	0	97	28	26	18	26	1.98
6126165--6126216	26	2.0	26	96	0	95	28	26	17	26	1.97
6124391--6130153	901	6.4	899	85	3	7253	25	25	24	25	2.00
6127066--6127118	26	2.0	26	82	7	63	26	22	18	32	1.97
6128861--6128913	26	2.0	26	96	0	97	28	26	18	26	1.98
6129781--6129833	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6131491--6131544	26	2.1	26	89	0	81	25	22	24	27	2.00
6134096--6134145	26	1.9	26	87	0	73	32	24	14	30	1.94
6134998--6135050	26	2.0	26	92	7	90	30	26	16	26	1.97
6133222--6137460	904	4.7	902	89	2	5897	25	24	24	25	2.00
6135891--6135943	26	2.0	26	96	0	97	28	26	18	26	1.98
6136787--6136846	26	2.4	26	86	5	88	26	26	20	26	1.99
6137494--6137546	26	2.0	26	92	0	88	26	22	20	30	1.98
6139256--6139306	26	2.0	26	96	0	93	27	21	21	29	1.99
6140146--6140198	26	2.0	26	96	0	97	26	20	22	30	1.98
6140886--6140939	27	2.0	26	92	3	90	25	24	20	29	1.99
6142515--6142566	26	2.0	26	92	0	86	26	26	17	28	1.97
6141029--6143886	895	3.2	881	87	4	3796	25	24	24	25	2.00
6143426--6143478	26	2.0	26	92	0	88	26	22	20	30	1.98
6144242--6144294	26	2.0	26	88	0	79	33	24	16	24	1.96
6145943--6145994	25	2.0	26	88	3	79	26	23	19	30	1.98
6146130--6146179	26	1.9	26	87	0	73	28	22	20	30	1.98
6146432--6147270	437	1.9	436	89	2	1308	31	21	18	27	1.97
6147480--6147532	26	2.0	26	92	0	88	26	26	20	26	1.99
6149259--6149314	26	2.2	26	96	0	103	28	23	19	28	1.98
6150163--6150214	26	2.0	26	96	0	95	25	26	21	26	1.99
6150639--6150684	24	1.9	24	90	0	74	54	15	6	23	1.64
6151064--6151116	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6146868--6152244	902	6.0	901	85	4	6541	25	24	24	25	2.00
6151949--6152027	26	3.0	26	90	0	122	29	25	17	27	1.98
6152805--6152857	26	2.0	26	89	7	81	24	24	20	30	1.99
6153692--6153744	26	2.0	26	92	0	88	26	28	16	28	1.97
6154593--6154645	26	2.0	26	92	0	88	28	28	16	26	1.97
6152237--6158056	901	6.5	898	88	2	8108	25	24	23	25	2.00
6156397--6156447	26	2.0	26	92	0	84	21	27	19	31	1.97
6157292--6157344	26	2.0	26	96	0	97	28	26	18	26	1.98
6158030--6158082	26	2.0	26	96	0	97	28	26	18	26	1.98
6157281--6158798	738	2.1	740	96	0	2790	26	24	22	26	2.00
6158931--6158983	26	2.0	26	96	0	97	26	24	20	28	1.99
6159671--6159723	26	2.0	26	96	0	97	28	26	18	26	1.98
6158928--6161177	738	3.0	738	95	0	3962	26	24	23	25	2.00
6164758--6164833	21	3.5	21	82	13	75	76	0	18	5	0.97
6164756--6164817	17	3.3	18	80	15	56	77	0	19	3	0.90
6164778--6164834	13	4.0	13	79	20	53	77	0	19	3	0.92
6166078--6166375	41	7.1	41	91	4	438	23	16	23	35	1.95
6166078--6166336	83	3.1	82	94	2	441	23	16	23	35	1.95
6166382--6166430	1	49.0	1	79	0	53	89	10	0	0	0.48
6166383--6166430	26	1.9	24	91	8	78	89	10	0	0	0.48
6166382--6166430	9	5.7	9	84	15	68	89	10	0	0	0.48
6166382--6166430	19	2.8	19	82	17	70	89	10	0	0	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6166664--6166694	4	7.8	4	92	0	53	22	3	0	74	0.96
6166649--6166784	20	6.6	19	68	23	55	30	2	2	65	1.16
6166670--6166783	16	6.9	16	71	18	58	30	1	1	65	1.13
6166737--6166783	3	14.7	3	82	12	58	34	0	0	65	0.93
6167696--6167736	17	2.5	16	84	7	55	24	4	0	70	1.06
6167722--6167769	17	2.8	17	77	3	60	14	6	2	77	1.06
6167750--6167779	14	2.1	14	93	0	51	16	6	0	76	0.99
6167787--6168082	59	5.0	59	87	4	418	45	7	13	34	1.70
6167873--6167964	28	3.1	28	63	22	71	41	5	16	36	1.71
6168675--6168727	26	2.0	26	92	0	88	26	16	26	30	1.97
6168579--6175968	904	8.2	904	86	3	9600	25	24	25	25	2.00
6171344--6171394	26	2.0	26	92	7	86	25	21	27	25	1.99
6172248--6172300	26	2.0	26	92	0	88	24	18	28	28	1.98
6173136--6173188	26	2.0	26	96	0	97	28	15	26	30	1.96
6174038--6174090	26	2.0	26	96	0	97	28	20	24	26	1.99
6177961--6178010	26	1.9	26	100	0	100	28	20	26	26	1.99
6178855--6178907	26	2.0	26	85	0	70	26	22	22	28	1.99
6176079--6179074	903	3.3	887	84	5	3790	24	24	25	25	2.00
6179467--6179516	26	1.9	26	95	0	91	28	18	26	28	1.98
6180354--6180405	26	2.0	26	92	0	86	28	19	23	28	1.98
6179071--6181281	886	2.5	886	85	5	2859	25	23	24	26	2.00
6181978--6182033	26	2.2	26	96	0	103	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6181225--6184787	911	3.9	899	80	9	3394	25	24	25	25	2.00
6184711--6184763	26	2.0	26	92	0	88	26	20	26	26	1.99
6186163--6186218	26	2.2	26	93	0	94	30	19	23	26	1.98
6188724--6188779	26	2.2	26	93	0	94	26	23	19	30	1.98
6188753--6190978	708	3.1	711	87	5	3127	25	24	23	26	2.00
6190179--6190231	26	2.0	26	92	0	88	26	26	20	26	1.99
6192873--6192928	26	2.2	26	96	0	103	28	23	19	28	1.98
6190155--6193667	911	3.9	902	85	4	4669	25	25	23	25	2.00
6192910--6194383	710	2.1	710	87	3	2124	26	23	23	26	2.00
6194486--6194536	25	2.0	26	92	3	86	27	23	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120