genome.fa.s146.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  106  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15044520--15044545	13	2.0	13	100	0	52	53	0	0	46	1.00
15044534--15044581	12	3.4	14	88	11	64	37	0	2	60	1.09
15044543--15044581	6	6.0	6	88	8	51	35	0	2	61	1.10
15048912--15048937	11	2.4	11	100	0	52	69	0	7	23	1.14
15049554--15049737	99	1.8	101	82	9	241	52	6	11	29	1.62
15071315--15071350	3	12.0	3	100	0	72	33	33	0	33	1.58
15076938--15076996	30	2.0	30	93	0	100	45	0	1	52	1.10
15078037--15078161	58	2.2	58	92	0	205	39	12	15	32	1.85
15078059--15078182	58	2.1	57	82	8	144	41	13	14	30	1.85
15078559--15078621	5	12.8	5	79	12	60	15	0	3	80	0.83
15079665--15080038	59	6.1	59	77	13	284	48	6	10	34	1.62
15080999--15081046	25	1.9	25	87	8	71	31	8	18	41	1.80
15081186--15081223	20	1.9	20	94	0	67	36	26	13	23	1.91
15081548--15081597	12	4.1	12	82	10	50	12	2	4	82	0.90
15081549--15081597	13	3.9	12	81	7	53	12	2	4	81	0.91
15081684--15082190	57	8.6	58	88	7	711	44	7	13	34	1.73
15081684--15082204	116	4.4	115	86	8	726	45	7	13	33	1.72
15083653--15083681	15	1.9	15	100	0	58	31	0	0	68	0.89
15083647--15083699	22	2.3	24	78	21	69	30	1	0	67	1.01
15083790--15083843	21	2.6	20	80	8	63	35	0	11	53	1.36
15084081--15084268	103	1.8	103	87	2	279	45	13	7	33	1.72
15086024--15086093	27	2.7	27	68	19	67	51	1	0	47	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15088135--15088203	33	2.1	34	86	2	95	59	0	11	28	1.32
15088202--15088269	30	2.3	29	90	5	109	51	0	1	47	1.09
15088287--15088331	19	2.3	20	84	3	56	44	2	0	53	1.13
15096062--15096110	26	1.9	26	87	4	73	38	4	6	51	1.46
15096728--15096777	24	2.0	24	84	3	64	40	0	14	46	1.44
15102582--15102719	64	2.2	62	80	11	149	43	6	6	43	1.56
15103118--15103286	60	2.8	60	76	6	180	46	5	7	41	1.54
15103597--15103627	16	1.9	16	100	0	62	45	12	6	35	1.68
15116971--15117013	14	3.1	14	83	12	61	58	0	0	41	0.98
15116971--15117047	28	2.7	30	76	11	81	49	2	1	46	1.23
15137384--15137420	18	2.0	19	89	5	58	62	0	0	37	0.96
15138028--15138086	17	3.2	19	71	24	54	55	5	1	37	1.32
15138220--15138252	2	17.0	2	93	6	59	51	0	0	48	1.00
15138320--15138349	2	15.0	2	100	0	60	50	0	50	0	1.00
15148566--15148620	28	2.0	28	82	7	67	38	3	1	56	1.28
15149442--15149466	13	1.9	13	100	0	50	44	0	8	48	1.32
15149490--15149539	22	2.3	22	86	3	66	62	8	6	24	1.46
15149716--15149768	23	2.3	22	74	6	52	39	1	3	54	1.29
15149984--15150097	42	2.9	39	73	17	94	46	2	1	49	1.26
15150258--15150293	17	2.2	16	90	9	56	47	0	2	50	1.15
15150582--15150635	28	2.0	28	85	3	74	46	5	0	48	1.25
15157505--15157541	6	6.2	6	96	0	65	2	35	16	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15165819--15165847	13	2.1	14	93	6	51	41	0	0	58	0.98
15165839--15165918	20	4.1	20	74	19	71	36	2	0	61	1.10
15166676--15166713	19	2.0	19	85	10	51	31	0	5	63	1.17
15166728--15166760	6	5.8	6	86	13	52	15	0	0	84	0.61
15166727--15166762	11	3.4	10	85	14	54	13	0	0	86	0.58
15166728--15166760	17	1.9	17	100	0	66	15	0	0	84	0.61
15166768--15167072	58	5.3	58	82	7	338	47	5	10	36	1.61
15166768--15167058	115	2.5	115	86	6	383	46	5	11	37	1.62
15177203--15177247	9	4.9	9	82	15	56	88	0	4	6	0.61
15177201--15177247	19	2.6	18	83	12	60	85	0	4	10	0.74
15178244--15178498	44	5.9	44	86	1	329	21	12	20	45	1.84
15178746--15178787	20	2.1	20	90	0	66	35	2	0	61	1.09
15179533--15179576	12	3.8	11	80	11	52	25	2	0	72	0.96
15179530--15179576	24	2.0	23	87	4	67	25	2	0	72	0.96
15179597--15179626	5	5.8	5	92	7	51	16	0	0	83	0.65
15179597--15179627	11	2.9	11	95	4	55	16	0	0	83	0.64
15179596--15179626	16	1.9	16	100	0	62	16	0	0	83	0.64
15179635--15179996	58	6.3	59	80	7	354	46	4	10	38	1.60
15179635--15180001	115	3.2	117	82	6	383	45	4	10	39	1.60
15179863--15179894	16	1.9	17	93	6	57	46	3	0	50	1.17
15179863--15179901	16	2.4	16	87	8	53	41	2	0	56	1.13
15191280--15191310	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15197846--15197899	25	2.2	25	82	0	63	42	0	1	55	1.10
15198683--15198723	14	2.7	15	85	14	57	39	0	0	60	0.96
15198710--15198789	20	4.1	20	74	19	71	36	2	0	61	1.10
15198673--15198797	54	2.2	59	83	8	161	34	1	0	64	1.04
15199545--15199582	19	2.0	19	85	10	51	31	0	5	63	1.17
15199598--15199630	6	5.8	6	86	13	52	15	0	0	84	0.61
15199596--15199631	11	3.4	10	85	14	54	13	0	0	86	0.58
15199598--15199630	17	1.9	17	100	0	66	15	0	0	84	0.61
15199636--15199933	57	5.3	55	82	9	332	45	5	11	37	1.61
15199636--15199898	115	2.3	113	88	3	377	46	4	9	39	1.58
15210071--15210124	19	2.8	19	89	10	92	90	0	3	5	0.53
15210071--15210124	1	54.0	1	81	0	63	90	0	3	5	0.53
15211121--15211375	44	5.9	44	87	1	338	21	13	20	45	1.84
15211622--15211663	20	2.1	20	90	0	66	35	2	0	61	1.09
15211632--15211686	20	2.7	20	86	8	67	30	1	0	67	1.01
15212508--15212927	57	7.3	57	81	7	408	46	5	10	38	1.61
15212734--15212773	16	2.5	15	88	8	53	45	2	0	52	1.14
15223976--15224071	50	1.9	50	82	4	122	46	11	10	31	1.73
15224227--15224254	3	9.3	3	100	0	56	32	0	0	67	0.91
15236904--15236928	3	8.3	3	100	0	50	68	0	0	32	0.90
15240264--15240292	2	15.0	2	92	7	51	48	0	0	51	1.00
15240689--15240726	3	12.7	3	100	0	76	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15240959--15241653	250	2.9	232	81	8	863	40	11	5	43	1.63
15241530--15241596	34	2.1	33	83	8	84	35	4	1	58	1.28
15242848--15242878	13	2.3	14	94	5	55	58	0	0	41	0.98
15251519--15251643	18	6.9	18	70	18	73	52	4	0	42	1.28
15251565--15251630	23	3.1	23	68	20	70	53	4	1	40	1.31
15251609--15251654	18	2.6	18	82	0	65	58	4	0	36	1.18
15251652--15251740	22	4.3	21	79	14	87	56	1	1	41	1.14
15251565--15251740	19	8.9	20	71	18	104	55	3	1	40	1.24
15251601--15251727	8	15.9	8	66	21	52	55	2	0	42	1.13
15251755--15251845	16	5.2	16	71	19	51	47	2	0	50	1.13
15251812--15251845	16	2.2	16	89	5	52	50	2	0	47	1.16
15251772--15251877	36	2.6	41	79	19	109	49	2	0	48	1.16
15251826--15251885	26	2.4	25	86	8	77	48	5	0	46	1.24
15252225--15252264	15	2.7	15	80	0	53	67	20	10	2	1.31
15254364--15254470	36	3.0	36	93	1	180	18	38	16	26	1.92
15262526--15262552	2	13.5	2	100	0	54	51	0	0	48	1.00
15263220--15263257	17	2.2	17	86	9	51	60	5	0	34	1.19
15264487--15264551	31	2.1	31	86	8	89	16	3	20	60	1.49
15269645--15269730	29	2.8	32	77	12	90	47	0	2	50	1.14
15275250--15275378	34	3.8	33	70	15	84	45	6	3	44	1.46
15279770--15279835	15	4.3	15	76	16	55	1	15	3	80	0.91
15279781--15279818	20	2.0	20	89	5	60	0	13	0	86	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15279781--15279829	22	2.3	21	86	10	64	0	16	0	83	0.64
15279873--15279909	19	1.9	19	88	0	56	51	0	0	48	1.00
15280217--15280266	24	2.1	24	92	0	82	40	20	16	24	1.91
15280240--15280435	87	2.3	87	86	1	277	38	20	20	20	1.94
15280343--15280544	109	1.9	109	85	2	280	39	21	18	20	1.92
15280452--15280718	87	3.1	87	85	1	356	41	21	17	19	1.90
15281285--15281532	32	7.7	32	74	8	189	35	13	19	31	1.90
15281270--15281743	65	7.1	64	73	10	328	34	14	19	31	1.92
15281270--15281743	33	14.2	33	74	13	305	34	14	19	31	1.92
15282921--15282962	11	3.7	11	84	6	57	14	2	2	80	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120