genome.fa.s146.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  76  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9483840--9483891	18	3.1	18	86	13	67	34	0	0	65	0.93
9483803--9483897	45	2.1	45	86	3	129	41	0	1	57	1.05
9483886--9483949	31	1.9	33	84	12	87	48	0	0	51	1.00
9483807--9483958	37	4.2	36	70	18	120	41	0	0	57	1.03
9483853--9484026	30	5.7	30	72	16	126	42	0	0	56	1.03
9483813--9483983	15	11.1	17	67	25	71	43	0	1	55	1.07
9483882--9484018	19	6.6	21	68	20	76	44	0	0	54	1.05
9483919--9484026	46	2.3	47	79	7	123	42	0	0	56	1.05
9483920--9484033	23	4.9	24	69	20	82	41	0	0	57	1.11
9485469--9485514	19	2.3	20	88	3	67	52	0	0	47	1.00
9486399--9486497	24	3.8	24	74	14	65	57	1	4	37	1.24
9486399--9486496	25	3.7	26	72	15	69	57	1	4	37	1.25
9486677--9486709	9	3.8	9	88	8	50	0	9	3	87	0.63
9486677--9486709	16	2.0	17	88	5	50	0	9	3	87	0.63
9491183--9491226	12	3.4	12	79	14	52	45	0	38	15	1.47
9491179--9491219	7	6.1	7	86	11	59	43	0	41	14	1.45
9492130--9492175	22	2.1	22	91	0	74	39	15	10	34	1.82
9496841--9496865	8	3.1	8	100	0	50	12	0	0	88	0.53
9504358--9504414	25	2.3	25	84	0	69	66	7	19	7	1.39
9507613--9507644	2	16.0	2	93	0	55	46	0	3	50	1.17
9510537--9510579	21	2.0	22	81	4	52	58	0	0	41	0.98
9510552--9510612	24	2.7	23	72	27	58	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9510562--9510638	38	2.0	38	85	12	104	49	0	0	50	1.00
9510562--9510667	36	2.8	38	82	10	105	49	0	0	50	1.00
9514700--9514784	24	3.5	24	69	20	70	34	1	2	62	1.16
9514701--9514755	27	2.0	27	85	0	74	30	1	3	63	1.22
9518983--9519041	23	2.5	24	78	13	59	22	1	22	54	1.54
9521183--9521763	196	3.0	196	100	0	1162	31	8	16	42	1.79
9524388--9524864	159	3.0	157	77	7	441	40	20	6	33	1.77
9529006--9529030	11	2.3	11	100	0	50	48	28	8	16	1.74
9536029--9536058	15	2.0	15	100	0	60	46	20	6	26	1.75
9536101--9536141	9	4.6	9	85	8	57	87	9	0	2	0.62
9538555--9538580	8	3.2	8	100	0	52	38	11	0	50	1.39
9542258--9542634	43	8.7	43	74	6	253	29	8	17	44	1.79
9542263--9542634	129	2.9	129	78	6	394	29	8	17	44	1.79
9542263--9542634	86	4.3	85	74	6	302	29	8	17	44	1.79
9542518--9542656	44	3.2	45	79	10	137	31	10	13	44	1.77
9542735--9542780	23	2.0	22	83	4	56	28	2	15	54	1.53
9542866--9542942	18	4.1	19	78	11	70	35	16	6	41	1.75
9543791--9543869	42	1.9	41	84	7	106	41	6	2	49	1.42
9544125--9544174	16	3.1	16	79	0	55	54	12	2	32	1.49
9544131--9544177	16	2.9	16	80	0	58	53	12	0	34	1.39
9548706--9548746	19	2.3	18	84	16	50	34	0	9	56	1.32
9550899--9550935	19	1.9	19	88	0	56	54	8	5	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9551646--9551689	23	1.9	23	95	0	79	34	0	4	61	1.16
9551646--9551685	11	3.5	11	80	6	53	32	0	5	62	1.17
9551886--9552094	105	2.0	106	89	1	321	35	8	11	44	1.70
9554548--9554617	30	2.3	32	80	7	83	55	1	0	42	1.08
9558048--9558125	34	2.3	33	79	14	79	46	6	6	41	1.55
9558179--9558209	14	2.1	15	94	5	55	48	0	0	51	1.00
9558210--9558267	24	2.4	24	88	2	80	55	3	1	39	1.27
9558200--9558301	54	1.9	52	84	9	134	55	3	1	38	1.29
9558213--9558294	24	3.1	24	73	18	65	56	3	2	37	1.30
9558217--9558305	30	3.2	28	70	18	78	56	4	2	37	1.32
9565562--9568618	611	5.0	611	99	0	6036	36	12	17	33	1.87
9569170--9569253	28	3.0	28	81	13	93	45	35	0	19	1.50
9569178--9569266	14	6.4	14	78	17	78	44	33	0	21	1.52
9569185--9569271	7	12.4	7	69	18	56	45	32	0	21	1.52
9569300--9569335	19	1.9	19	94	5	65	47	27	0	25	1.52
9569445--9569517	37	2.1	35	85	12	96	30	9	6	53	1.59
9570380--9570419	12	3.1	14	79	17	50	52	2	12	32	1.52
9571166--9571241	17	4.5	17	75	8	75	76	1	19	2	0.98
9576246--9576289	16	2.8	15	80	10	52	68	4	25	2	1.20
9580769--9580843	34	2.2	34	97	2	143	36	10	20	33	1.87
9582359--9582913	49	11.5	48	80	7	473	31	14	12	41	1.82
9582372--9582913	96	5.6	95	78	7	466	31	14	12	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9585116--9585202	43	2.0	43	86	0	120	26	13	12	47	1.79
9585227--9585290	20	3.2	19	79	12	67	48	34	0	17	1.47
9585271--9585419	54	2.8	52	82	6	174	43	34	0	20	1.57
9585401--9585498	19	5.1	19	70	14	76	47	35	0	16	1.47
9585555--9585628	35	2.1	35	87	10	105	28	10	8	52	1.64
9587615--9587647	2	16.5	2	100	0	66	51	0	48	0	1.00
9594330--9594357	2	14.0	2	100	0	56	50	0	0	50	1.00
9599483--9599580	44	2.2	43	80	5	115	61	9	5	24	1.47
9600225--9600389	70	2.4	68	76	9	163	53	15	4	26	1.59
9600541--9600579	11	3.5	11	85	0	51	87	5	2	5	0.75
9605302--9605363	21	3.0	20	73	17	63	58	14	1	25	1.46
9610637--9610682	23	2.0	23	87	8	67	21	52	8	17	1.71
9611980--9612049	28	2.5	28	78	2	77	47	31	1	20	1.59
9612027--9612256	30	7.8	29	75	7	140	44	31	1	22	1.63
9611999--9612242	60	4.2	57	73	7	166	44	30	2	22	1.64
9612142--9612331	14	13.1	13	69	18	76	47	33	1	17	1.58
9612233--9612328	29	3.3	29	76	15	51	48	34	2	14	1.56
9612114--9612256	60	2.4	60	83	4	173	47	33	0	18	1.54
9612233--9612315	28	2.9	29	83	3	105	49	34	1	14	1.51
9612258--9612345	44	2.0	44	84	4	115	48	34	1	15	1.53
9612275--9612358	22	3.8	23	75	17	72	54	29	1	14	1.47
9612624--9612656	17	1.9	17	93	0	57	66	0	12	21	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9613838--9613868	15	2.1	15	93	0	53	54	12	3	29	1.53
9616338--9616414	22	3.6	21	87	8	111	25	3	20	49	1.66
9620195--9620221	13	2.1	13	100	0	54	51	7	0	40	1.30
9621673--9621707	18	1.9	19	88	11	56	77	0	5	17	0.96
9623084--9623234	62	2.4	62	79	7	155	36	9	11	42	1.74
9623361--9623481	64	1.9	64	83	6	156	45	8	7	38	1.62
9627762--9627825	6	10.3	6	83	11	67	67	3	1	28	1.15
9627766--9627826	19	3.2	19	79	9	70	68	3	1	26	1.14
9629269--9629544	151	1.8	149	80	6	324	44	4	7	43	1.52
9629718--9629773	26	2.2	26	80	6	60	58	1	3	35	1.26
9630689--9630718	15	1.9	16	93	6	53	16	3	0	80	0.85
9633179--9633204	10	2.6	10	100	0	52	84	0	7	7	0.77
9633181--9633215	18	1.9	18	88	0	52	77	0	11	11	1.00
9634349--9634383	14	2.5	14	90	0	52	54	0	0	45	0.99
9635022--9635063	20	2.2	20	83	8	52	38	7	16	38	1.76
9638042--9638085	19	2.3	19	92	0	70	52	9	4	34	1.54
9638050--9638087	19	2.0	19	100	0	76	42	15	5	36	1.70
9644573--9644634	4	16.2	4	77	9	67	70	3	1	24	1.10
9644582--9644634	14	3.5	15	78	17	56	71	1	1	24	1.06
9644811--9644980	44	3.9	43	82	6	191	44	18	12	24	1.85
9644812--9644980	87	1.9	87	83	7	218	44	18	12	24	1.84
9644864--9644994	43	3.0	41	75	18	115	45	16	12	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9645517--9645569	20	2.6	21	87	3	72	37	13	9	39	1.77
9645479--9645890	79	5.2	79	72	12	297	35	16	9	37	1.82
9645599--9645652	21	2.6	21	91	2	83	40	12	5	40	1.67
9645593--9645954	41	9.0	41	71	12	221	37	15	9	37	1.81
9645517--9645755	99	2.4	100	87	2	347	35	15	10	38	1.81
9645692--9646106	21	19.9	21	70	15	240	36	14	9	38	1.80
9645596--9645949	140	2.5	140	90	2	532	36	15	9	38	1.80
9645524--9645933	120	3.4	120	75	9	413	36	15	10	37	1.81
9645917--9646022	46	2.3	45	82	7	133	37	14	10	37	1.80
9645937--9646021	25	3.6	24	78	12	95	37	12	10	38	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120