genome.fa.s146.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  67  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7766495--7766557	3	21.0	3	100	0	126	66	0	0	33	0.92
7766880--7766931	3	17.0	3	81	18	63	65	0	1	32	1.04
7767121--7767174	21	2.7	20	78	18	58	59	27	0	12	1.34
7767121--7767162	21	2.0	22	86	13	61	57	26	0	16	1.40
7767106--7767168	28	2.2	29	88	5	92	55	28	0	15	1.41
7773415--7773455	13	3.2	13	80	19	50	78	0	14	7	0.96
7773417--7773456	14	3.0	14	80	20	50	75	0	15	10	1.05
7775147--7775349	36	5.6	36	75	6	117	23	18	7	50	1.72
7775180--7775366	71	2.6	73	81	2	225	22	17	8	51	1.71
7775576--7775673	6	15.7	6	75	13	58	79	13	4	3	0.99
7775573--7775614	17	2.6	16	85	7	57	83	11	2	2	0.84
7775586--7775664	14	5.8	14	72	19	53	77	16	3	2	1.03
7775939--7775982	23	1.9	23	86	9	63	59	2	0	38	1.10
7775932--7776003	13	5.4	13	73	15	58	62	4	0	33	1.14
7776010--7776058	25	2.0	24	81	14	57	77	6	10	6	1.11
7776010--7776058	26	1.9	25	83	4	62	77	6	10	6	1.11
7777762--7777823	3	19.0	3	79	9	52	66	0	1	32	1.02
7777998--7778074	28	2.7	29	79	16	88	51	28	0	19	1.47
7778012--7778063	22	2.4	22	75	12	54	51	26	0	21	1.47
7778299--7778329	13	2.5	12	94	5	53	70	0	0	29	0.87
7785752--7785786	18	1.9	18	94	0	61	68	2	5	22	1.24
7792795--7792872	16	4.8	17	75	10	65	24	1	24	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7792822--7792881	32	1.9	31	90	10	95	21	0	28	50	1.49
7793514--7793565	27	2.0	26	84	3	68	21	13	23	42	1.88
7794149--7794190	21	2.0	21	90	9	68	9	4	52	33	1.55
7794257--7794296	16	2.5	16	100	0	80	0	0	20	80	0.72
7797612--7797718	51	2.1	51	84	3	135	43	6	4	44	1.50
7800453--7800507	25	2.2	24	78	12	58	32	5	0	61	1.19
7801923--7802001	34	2.3	34	82	8	90	36	7	11	44	1.69
7806083--7806141	24	2.3	25	80	11	66	66	3	0	30	1.08
7806716--7806748	17	1.9	17	93	0	57	48	3	0	48	1.17
7807098--7807165	27	2.5	28	83	9	95	69	0	1	29	0.98
7807124--7807158	18	2.1	17	89	10	54	71	0	2	25	1.00
7807391--7807420	15	1.9	16	93	6	53	60	0	3	36	1.14
7812595--7812637	22	2.0	22	95	0	77	18	27	9	44	1.80
7813777--7813816	21	1.9	21	85	10	55	15	35	17	32	1.91
7816615--7816711	50	1.9	50	91	4	160	41	18	6	34	1.76
7817926--7817973	21	2.3	21	85	7	62	50	8	2	39	1.44
7819924--7819958	6	5.7	6	86	6	52	85	0	0	14	0.59
7819874--7819949	31	2.6	29	78	12	91	71	1	3	23	1.11
7819874--7819959	13	6.1	13	70	19	57	73	1	3	22	1.05
7820307--7820340	12	2.9	12	95	4	61	52	14	5	26	1.64
7820838--7820956	5	23.2	5	77	13	91	56	4	1	37	1.29
7826775--7826836	17	3.5	17	72	21	56	27	0	14	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7826961--7827035	39	1.9	39	84	7	100	69	4	4	22	1.22
7827887--7827981	5	18.8	5	71	18	63	56	6	1	35	1.31
7827895--7827981	18	4.9	18	68	13	63	56	6	1	35	1.34
7830425--7830465	6	6.8	6	94	0	64	39	0	12	48	1.41
7831691--7831728	16	2.6	14	88	12	51	52	2	0	44	1.14
7832088--7832138	25	2.0	25	100	0	102	41	7	7	43	1.63
7832653--7832715	31	2.0	31	87	0	90	42	11	9	36	1.73
7832996--7833026	2	15.5	2	100	0	62	51	0	0	48	1.00
7836580--7836627	18	2.7	18	93	3	80	41	10	16	31	1.82
7837054--7837119	15	4.5	15	77	9	64	15	0	27	57	1.38
7837054--7837199	15	9.7	15	71	13	59	19	2	25	52	1.60
7837060--7837119	21	2.7	22	82	7	77	13	0	30	56	1.37
7837172--7837207	15	2.4	15	90	0	54	16	0	27	55	1.42
7837151--7837214	15	4.2	15	71	15	51	25	1	23	50	1.58
7837180--7837222	15	2.8	16	82	13	54	25	0	23	51	1.49
7837259--7837332	15	4.9	14	74	15	60	27	0	25	47	1.52
7837295--7837332	16	2.5	15	91	4	58	26	0	21	52	1.47
7837374--7837429	23	2.5	23	80	11	62	19	1	33	44	1.61
7837367--7837429	23	2.8	22	77	15	58	20	1	33	44	1.61
7837404--7837444	15	2.6	16	96	3	75	14	0	31	53	1.41
7837569--7837608	3	13.3	3	100	0	80	32	0	0	67	0.91
7839461--7839618	81	2.0	81	82	2	192	39	15	10	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7839733--7839825	48	1.9	49	84	6	127	50	13	8	26	1.71
7839913--7840080	28	5.9	29	74	10	100	30	16	22	31	1.95
7839983--7840091	27	3.9	27	77	9	112	31	18	20	30	1.96
7839962--7840090	55	2.3	57	81	10	142	33	17	19	30	1.94
7840111--7840159	22	2.2	22	88	0	71	16	18	32	32	1.93
7845547--7845601	4	13.8	4	77	7	58	52	3	20	23	1.62
7845547--7845601	16	3.4	16	82	9	67	52	3	20	23	1.62
7849373--7849419	18	2.5	19	82	3	60	25	2	29	42	1.67
7849455--7849517	23	2.8	22	79	13	58	15	3	33	47	1.62
7849576--7849608	16	2.1	16	94	5	59	42	0	15	42	1.46
7849864--7849888	3	8.3	3	100	0	50	36	0	0	64	0.94
7852093--7852181	38	2.3	38	80	5	90	30	8	23	37	1.86
7866570--7866612	22	2.0	22	85	0	59	48	18	2	30	1.60
7872771--7873546	202	3.8	201	79	5	746	40	10	13	36	1.78
7877883--7877930	20	2.3	21	85	7	62	39	8	16	35	1.79
7879640--7879685	22	2.1	22	95	0	83	39	0	23	36	1.55
7879727--7879761	17	2.0	17	88	5	52	28	14	8	48	1.73
7883959--7883988	10	3.1	10	95	4	53	63	0	0	36	0.95
7885581--7885622	2	21.0	2	100	0	84	0	50	0	50	1.00
7886371--7886418	6	7.7	6	81	9	51	72	0	0	27	0.84
7886341--7886423	29	2.7	30	78	17	82	69	0	0	30	0.88
7886362--7886423	9	6.6	9	74	9	52	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7886340--7886418	35	2.1	39	84	9	103	70	0	0	29	0.87
7886688--7886756	32	2.1	33	89	2	104	36	11	20	31	1.88
7886797--7886907	32	3.5	32	75	14	104	46	9	23	20	1.79
7886866--7886930	32	2.0	32	84	0	85	47	9	24	18	1.77
7887875--7887922	16	2.9	16	90	6	69	18	10	0	70	1.15
7887874--7887936	16	3.4	19	72	12	51	15	11	0	73	1.10
7890966--7890999	2	17.0	2	93	0	50	50	44	0	5	1.26
7893556--7893581	3	8.7	3	100	0	52	30	0	0	69	0.89
7894345--7894437	10	8.7	10	69	17	53	17	4	1	77	0.99
7894355--7894420	24	2.6	24	81	13	71	21	3	0	75	0.93
7894377--7894419	15	2.7	15	80	16	50	23	0	0	76	0.78
7894379--7894465	36	2.3	38	84	3	106	20	3	3	72	1.14
7894679--7894920	95	2.6	94	83	5	303	43	13	10	32	1.78
7905829--7906330	66	7.7	65	78	4	402	22	19	10	47	1.80
7905829--7906331	132	3.8	131	81	2	519	22	19	10	47	1.80
7907642--7907780	68	2.1	68	84	4	183	41	10	4	44	1.58
7927311--7927371	25	2.4	26	83	5	81	57	1	1	39	1.18
7927459--7927532	19	3.8	20	71	21	66	52	6	10	29	1.62
7928263--7928318	16	3.7	15	76	11	51	44	0	0	55	0.99
7928401--7928445	20	2.3	19	84	3	54	51	2	0	46	1.13
7928596--7928631	17	2.1	17	100	0	72	47	0	25	27	1.52
7929184--7929266	28	2.8	29	82	12	89	49	2	1	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7929414--7929461	19	2.6	18	83	9	60	58	0	4	37	1.18
7942891--7943091	107	1.9	107	84	4	271	37	10	8	43	1.70
7944596--7944642	24	2.0	24	95	0	85	46	21	14	17	1.83
7946099--7946136	17	2.2	17	86	9	51	42	2	2	52	1.29
7946414--7946453	19	2.0	20	86	13	57	32	5	7	55	1.50
7948975--7949037	34	1.9	34	87	6	94	33	7	0	58	1.27
7955281--7955321	19	2.2	19	86	8	57	65	7	12	14	1.45
7957060--7957098	17	2.2	18	90	4	62	28	5	7	58	1.47
7958449--7958510	21	3.0	21	83	4	63	33	4	11	50	1.60
7959528--7959576	21	2.3	20	83	10	62	38	8	14	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120