genome.fa.s146.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  20  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2250585--2250637	26	2.0	26	100	0	106	30	26	16	26	1.97
2250005--2250928	320	2.9	318	82	5	1007	20	28	28	23	1.99
2250332--2250938	158	3.8	153	72	12	429	20	28	28	22	1.98
2251077--2251196	44	2.7	45	77	10	111	18	31	30	20	1.96
2252132--2252184	26	2.0	26	88	0	79	28	26	18	26	1.98
2252472--2252525	26	2.1	26	92	0	90	25	25	22	25	2.00
2252981--2253138	45	3.5	45	75	3	147	18	31	32	17	1.95
2254079--2254131	26	2.0	26	92	0	88	30	26	16	26	1.97
2254840--2254917	26	3.0	26	94	1	131	26	24	20	28	1.99
2254684--2255089	223	1.8	223	84	4	552	21	26	28	23	1.99
2255221--2255273	26	2.0	26	96	0	97	28	26	18	26	1.98
2255314--2255441	45	2.8	45	79	2	123	17	32	31	17	1.94
2258175--2258456	138	2.0	138	83	0	348	19	27	24	28	1.99
2259134--2259189	23	2.4	23	93	0	94	23	35	16	25	1.94
2259637--2259790	45	3.4	45	78	3	132	22	29	29	18	1.97
2259723--2259878	45	3.5	45	80	8	147	18	28	32	20	1.96
2260727--2260778	26	2.0	26	88	3	79	25	26	23	25	2.00
2261082--2261133	26	2.0	26	84	0	68	28	28	17	25	1.97
2260702--2262195	356	4.2	353	81	5	1563	22	26	26	24	2.00
2261437--2261515	26	3.0	26	100	0	158	26	26	20	26	1.99
2261784--2261836	26	2.0	26	88	0	79	28	24	16	30	1.97
2262140--2262191	26	2.0	26	96	0	95	32	23	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2262629--2262965	45	7.5	45	69	5	189	20	29	30	19	1.97
2262626--2262956	135	2.5	133	84	4	423	20	29	29	19	1.97
2263011--2263035	13	1.9	13	100	0	50	24	36	16	24	1.94
2263753--2264131	196	1.9	196	82	6	473	20	26	29	23	1.99
2264263--2264315	26	2.0	26	85	0	70	26	18	20	33	1.96
2264850--2264972	45	2.7	44	73	2	120	22	27	31	17	1.97
2267791--2267843	26	2.0	26	96	0	97	26	24	20	28	1.99
2268619--2268786	91	1.9	90	81	8	207	19	30	29	20	1.97
2268615--2268813	91	2.2	90	78	9	201	19	28	31	21	1.97
2270648--2270672	13	1.9	13	100	0	50	24	36	16	24	1.94
2273387--2273483	45	2.2	45	79	7	108	20	30	30	17	1.96
2273893--2274020	45	2.8	45	79	2	132	18	31	30	19	1.96
2276606--2276658	26	2.0	26	92	0	88	26	22	20	30	1.98
2277405--2277607	45	4.5	45	72	4	131	18	28	33	20	1.96
2277448--2277620	90	1.9	90	83	2	222	18	28	32	20	1.96
2278548--2278598	26	2.0	26	100	0	102	33	27	11	27	1.92
2280535--2280587	26	2.0	26	92	0	88	30	26	16	26	1.97
2280890--2280942	26	2.0	26	92	0	88	26	22	20	30	1.98
2288690--2288858	45	3.7	45	78	0	167	18	30	32	18	1.95
2288701--2288870	90	1.9	90	83	0	223	18	31	31	18	1.96
2288691--2288886	90	2.2	90	79	2	205	18	30	32	18	1.95
2289796--2289853	26	2.2	26	90	3	89	29	27	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2290157--2290209	26	2.0	26	85	0	70	26	24	20	28	1.99
2291705--2291757	26	2.0	26	85	0	70	30	26	16	26	1.97
2292061--2292113	26	2.0	26	96	0	97	26	22	22	28	1.99
2292576--2292654	26	3.0	26	96	0	140	26	27	20	25	1.99
2293648--2293801	45	3.5	44	75	6	148	17	29	32	20	1.95
2295566--2295758	45	4.3	45	78	2	190	19	30	32	17	1.95
2297078--2297130	26	2.0	26	96	0	97	28	26	18	26	1.98
2306053--2306105	26	2.0	26	88	0	79	26	24	22	26	2.00
2306877--2307036	45	3.6	45	80	0	176	17	32	32	17	1.93
2307968--2308020	26	2.0	26	96	0	97	26	28	20	24	1.99
2308323--2308375	26	2.0	26	88	0	79	24	22	22	30	1.99
2308810--2308965	45	3.5	45	73	0	123	18	30	31	19	1.96
2309930--2309982	26	2.0	26	88	0	79	28	30	18	22	1.98
2310273--2310325	26	2.0	26	88	0	79	30	24	16	28	1.97
2310840--2310864	13	1.9	13	100	0	50	24	36	16	24	1.94
2311740--2311792	26	2.0	26	89	7	81	26	24	20	28	1.99
2312271--2312475	45	4.6	45	79	0	194	21	31	29	16	1.96
2312275--2312475	90	2.2	90	85	1	260	21	31	29	16	1.95
2314280--2314436	45	3.5	44	80	6	172	19	29	32	18	1.95
2315379--2315431	26	2.0	26	85	0	70	26	24	22	26	2.00
2315731--2315786	25	2.2	26	87	3	87	33	17	19	28	1.95
2316056--2316105	26	1.9	26	100	0	100	30	26	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2315538--2316139	319	1.9	319	84	3	800	20	26	29	23	1.99
2317534--2317586	26	2.0	26	85	7	72	28	24	18	28	1.98
2318395--2318554	45	3.6	44	79	1	167	19	30	32	17	1.95
2318404--2318591	90	2.1	90	79	5	193	19	29	33	17	1.95
2319090--2319762	336	2.0	336	94	0	1193	28	23	26	21	1.99
2320415--2320519	45	2.3	45	85	0	129	21	31	29	17	1.96
2320770--2320822	26	2.0	26	92	0	88	28	24	18	28	1.98
2321279--2321387	45	2.4	45	79	0	119	18	32	30	19	1.95
2324677--2324729	26	2.0	26	92	0	88	26	22	20	30	1.98
2325019--2325071	26	2.0	26	85	7	72	30	22	16	30	1.96
2326605--2326657	26	2.0	26	89	7	81	33	26	15	24	1.95
2327472--2327596	45	2.8	45	72	2	108	20	30	32	16	1.95
2328611--2328663	26	2.0	26	89	7	81	28	26	18	26	1.98
2329138--2329343	45	4.6	45	78	2	198	19	31	32	16	1.94
2329143--2329357	90	2.4	89	82	3	252	20	32	32	15	1.94
2329136--2329383	135	1.8	135	80	1	300	20	31	32	16	1.95
2330551--2330645	45	2.1	46	82	9	115	18	30	29	21	1.97
2332005--2332057	26	2.0	26	92	0	88	30	26	16	26	1.97
2332564--2332657	45	2.1	45	85	0	125	21	34	29	14	1.93
2333596--2333648	26	2.0	26	92	0	88	26	26	20	26	1.99
2334413--2334636	45	5.0	45	75	2	182	21	29	32	16	1.95
2334413--2334603	90	2.1	90	82	1	222	20	30	31	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2334450--2334628	90	2.0	91	80	1	207	21	29	32	15	1.95
2334865--2334917	26	2.0	26	92	0	88	28	24	16	30	1.97
2336266--2336317	26	2.0	26	100	0	104	26	23	19	30	1.98
2337711--2337916	45	4.6	45	70	4	146	19	30	31	18	1.96
2339213--2339265	26	2.0	26	92	0	88	28	24	18	28	1.98
2339868--2340196	171	1.9	170	80	3	383	18	27	31	21	1.97
2340170--2340222	26	2.0	26	92	0	88	30	24	16	28	1.97
2340667--2340857	45	4.2	45	78	2	177	19	30	30	19	1.96
2340659--2340834	90	2.0	90	80	0	199	20	31	29	18	1.97
2341775--2341853	26	3.0	26	90	0	122	27	27	18	25	1.98
2342593--2342786	45	4.3	45	76	3	158	20	28	31	19	1.96
2342596--2342798	90	2.3	90	82	3	230	20	28	32	18	1.97
2342593--2342816	45	5.0	45	76	3	155	20	29	32	17	1.96
2342622--2342830	90	2.3	90	78	8	219	20	29	31	18	1.96
2343567--2343619	26	2.0	26	89	7	81	24	28	20	26	1.99
2343920--2343972	26	2.0	26	92	0	88	28	24	18	28	1.98
2344419--2344533	45	2.6	45	81	2	142	18	29	33	19	1.95
2345653--2346017	158	2.3	160	80	3	398	20	28	27	24	1.99
2346271--2346383	45	2.5	45	76	2	111	20	30	34	15	1.93
2349502--2349657	45	3.5	45	80	0	150	17	28	33	20	1.96
2358299--2358369	26	2.7	26	93	0	124	26	23	18	30	1.97
2358136--2358540	223	1.8	222	79	3	474	23	26	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2366116--2366168	26	2.0	26	85	0	70	30	26	16	26	1.97
2367959--2368008	26	1.9	26	91	0	82	28	24	18	30	1.97
2368326--2368378	26	2.0	26	92	0	88	28	26	20	24	1.99
2368812--2369025	45	4.8	45	74	3	162	19	29	31	19	1.96
2368806--2369007	90	2.2	90	78	4	210	19	29	32	19	1.96
2369960--2370013	26	2.1	26	96	0	99	25	25	22	25	2.00
2370048--2370334	147	2.0	147	83	1	369	18	31	26	23	1.97
2370307--2370359	26	2.0	26	88	0	79	24	24	20	30	1.99
2371402--2371579	45	4.0	44	75	5	160	20	30	32	16	1.95
2372548--2372600	26	2.0	26	88	0	79	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120