genome.fa.s146.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  103  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14623691--14623743	26	2.1	25	82	6	63	81	5	0	13	0.86
14623641--14623730	36	2.5	35	78	7	110	77	3	1	17	0.96
14623648--14623741	17	5.4	17	72	13	57	75	4	1	19	1.03
14623646--14623743	18	5.4	18	66	16	60	76	4	1	18	1.00
14624095--14624148	26	2.2	24	83	9	65	72	3	7	16	1.22
14631726--14631795	27	2.6	26	78	17	79	82	5	5	5	0.93
14633484--14633583	41	2.5	41	86	4	141	36	17	16	31	1.91
14633713--14633758	22	2.1	22	87	0	65	32	23	15	28	1.95
14633745--14634051	109	2.8	108	81	4	375	22	18	16	42	1.88
14633730--14634261	219	2.4	219	80	4	581	23	19	16	40	1.90
14633718--14634263	109	5.0	109	79	5	352	23	19	16	40	1.91
14634349--14634593	109	2.2	109	84	2	332	20	18	12	48	1.80
14634573--14635029	105	4.4	105	84	2	544	22	17	11	47	1.80
14634600--14634993	211	1.9	211	87	3	578	23	16	11	48	1.79
14634884--14635241	174	2.1	175	84	2	470	21	16	12	49	1.79
14635694--14635723	15	1.9	16	93	6	53	86	6	0	6	0.70
14635764--14635808	23	2.0	23	86	0	63	17	57	4	20	1.56
14636055--14636114	23	2.5	24	76	15	70	70	8	8	13	1.35
14637122--14637159	17	2.2	17	90	0	58	52	31	2	13	1.54
14641602--14641630	13	2.1	14	93	6	51	86	0	0	13	0.58
14642834--14642878	22	2.0	22	82	0	54	33	4	0	62	1.15
14644235--14644455	48	4.6	47	80	5	201	39	18	10	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14656244--14656297	22	2.5	22	82	11	67	68	3	0	27	1.06
14659267--14659331	26	2.5	26	76	18	73	70	0	9	20	1.13
14660643--14660684	21	2.0	22	85	4	59	40	9	9	40	1.70
14661039--14661075	17	2.2	18	85	9	51	48	10	16	24	1.77
14661531--14661591	3	20.3	3	100	0	122	67	0	0	32	0.91
14662503--14662568	28	2.3	28	85	12	82	16	0	7	75	1.02
14662608--14662637	11	2.7	11	94	0	51	73	0	0	26	0.84
14664211--14664269	26	2.3	26	78	0	73	50	1	11	35	1.49
14665062--14665098	18	1.9	18	89	10	56	13	32	5	48	1.65
14665879--14665940	28	2.2	28	88	0	88	45	14	6	33	1.71
14665907--14666676	48	16.1	47	73	11	394	38	18	12	30	1.87
14665940--14666675	192	3.9	189	80	8	632	38	19	12	30	1.88
14665909--14666675	49	16.0	49	73	10	391	38	18	12	30	1.88
14665930--14666630	141	4.9	140	71	15	381	37	18	12	30	1.88
14670724--14670765	19	2.2	20	83	12	52	40	11	14	33	1.82
14675314--14675375	16	3.8	16	83	8	70	17	3	32	46	1.64
14675763--14675808	18	2.6	17	82	3	56	76	4	0	19	0.96
14676881--14676919	3	13.0	3	94	0	69	30	0	0	69	0.89
14682615--14682639	13	1.9	13	100	0	50	88	0	12	0	0.53
14682610--14682661	18	3.0	17	83	10	61	82	0	9	7	0.84
14691915--14691957	14	3.1	14	77	9	52	60	0	0	39	0.97
14692228--14692262	6	5.8	6	100	0	70	34	17	14	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14693129--14693158	14	2.1	14	93	0	51	26	0	3	70	1.03
14693137--14693210	6	12.3	6	70	11	53	32	1	2	63	1.17
14698535--14698671	65	2.1	65	94	0	238	45	18	16	19	1.86
14699503--14699533	2	15.5	2	100	0	62	48	0	0	51	1.00
14704344--14704405	25	2.6	25	82	14	85	37	14	25	22	1.92
14707850--14707913	32	2.0	32	93	0	110	39	15	10	34	1.83
14708727--14708767	2	20.5	2	94	0	73	53	46	0	0	1.00
14710914--14711079	84	2.0	84	86	0	233	30	19	16	33	1.94
14714127--14714157	2	15.5	2	100	0	62	0	0	48	51	1.00
14714191--14714245	28	2.0	28	96	0	101	41	18	12	27	1.86
14715830--14715881	26	2.0	26	92	0	86	13	25	30	30	1.94
14719531--14719609	29	2.5	31	80	15	83	36	1	0	62	1.04
14719630--14719749	30	4.0	29	70	8	89	53	2	5	39	1.36
14719715--14719759	24	1.9	23	86	4	63	53	2	2	42	1.25
14725636--14725677	3	14.0	3	94	0	75	69	0	30	0	0.89
14729123--14729152	14	2.1	14	93	0	51	43	26	0	30	1.55
14733344--14733545	100	2.0	100	100	0	404	41	14	13	30	1.85
14739160--14739193	3	11.3	3	93	0	59	67	0	29	2	1.05
14740080--14740123	18	2.4	19	81	11	56	34	0	9	56	1.31
14744284--14744345	11	5.3	11	74	16	54	40	0	4	54	1.22
14745012--14745072	21	2.7	22	80	19	65	52	1	0	45	1.10
14745710--14745749	18	2.1	20	86	9	57	70	2	2	25	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14745797--14745898	30	3.4	30	78	10	102	41	1	3	52	1.31
14745914--14745973	13	3.7	17	70	25	58	63	1	0	35	1.05
14748378--14748440	31	2.0	31	96	0	117	36	7	28	26	1.85
14754372--14754404	17	1.9	17	100	0	66	12	24	27	36	1.91
14761811--14761854	22	2.0	22	95	0	79	43	13	11	31	1.80
14765275--14765309	18	1.9	18	88	0	52	37	25	14	22	1.92
14765484--14765542	25	2.4	25	86	5	77	40	18	27	13	1.88
14765697--14765740	22	2.0	22	95	0	79	43	13	11	31	1.80
14766203--14766234	13	2.5	13	89	0	55	81	0	3	15	0.82
14784049--14784109	2	30.5	2	100	0	122	0	50	0	49	1.00
14786888--14787143	133	1.9	133	92	0	431	35	17	25	21	1.95
14788221--14788256	12	2.8	14	80	20	51	19	5	5	69	1.29
14791670--14791699	15	1.9	16	93	6	53	33	6	0	60	1.23
14793102--14793135	17	2.0	17	88	0	50	35	8	14	41	1.77
14793127--14793188	18	3.4	18	88	0	88	37	8	14	40	1.76
14793278--14793313	16	2.2	16	90	0	54	38	13	13	33	1.85
14793286--14793331	16	2.8	17	90	3	67	34	8	15	41	1.78
14793288--14793334	17	2.9	16	90	3	67	31	8	14	44	1.76
14793428--14793469	21	2.0	22	85	4	59	42	14	4	38	1.66
14794960--14795023	8	7.9	8	75	15	60	9	4	4	81	0.98
14794960--14795022	24	2.6	25	87	9	87	9	4	4	80	0.99
14794977--14795025	9	5.8	9	72	13	50	12	2	4	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14799847--14799871	2	12.5	2	100	0	50	52	0	0	48	1.00
14801025--14801070	22	2.0	23	95	4	85	10	26	13	50	1.74
14803517--14803542	3	8.7	3	100	0	52	30	0	0	69	0.89
14805237--14805269	17	2.1	16	88	11	50	48	0	0	51	1.00
14805463--14805511	22	2.2	23	85	3	64	53	2	0	44	1.12
14805463--14805529	34	2.0	34	85	11	93	53	2	0	43	1.16
14806613--14806643	1	31.0	1	100	0	62	0	0	0	100	0.00
14808344--14808394	2	25.5	2	95	0	93	50	0	49	0	1.00
14812640--14812664	12	2.1	12	100	0	50	32	0	16	52	1.44
14814564--14814588	11	2.3	11	100	0	50	8	0	0	92	0.40
14814723--14814753	10	3.2	10	95	4	55	51	0	0	48	1.00
14815020--14815055	19	1.9	18	88	5	54	8	2	2	86	0.77
14819146--14819172	14	1.9	14	100	0	54	44	0	7	48	1.31
14825841--14825870	2	15.0	2	92	0	51	50	3	0	46	1.18
14826290--14826336	17	2.7	17	80	9	51	27	0	2	70	0.99
14826776--14826803	3	9.3	3	100	0	56	67	0	0	32	0.91
14828607--14828659	2	26.5	2	100	0	106	50	0	49	0	1.00
14831294--14831338	22	2.0	22	95	0	81	37	0	0	62	0.96
14831288--14831345	22	2.5	22	80	5	71	36	0	0	63	0.94
14832876--14832904	2	14.5	2	100	0	58	0	0	48	51	1.00
14835122--14835152	15	2.1	15	93	0	53	45	0	0	54	0.99
14836284--14836375	46	2.0	46	95	0	166	33	30	15	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14841099--14841131	14	2.4	14	100	0	66	33	6	9	51	1.58
14841099--14841143	14	3.2	14	90	0	54	31	4	8	55	1.51
14848023--14848104	37	2.2	37	88	0	119	31	20	20	26	1.98
14852366--14852409	19	2.4	18	85	7	61	20	2	2	75	1.03
14852421--14852461	12	3.4	12	83	16	50	14	2	7	75	1.12
14852944--14852978	10	3.7	9	88	11	52	54	8	17	20	1.68
14853530--14853575	22	2.1	21	84	11	58	63	0	2	34	1.07
14855636--14855660	2	12.5	2	100	0	50	52	0	0	48	1.00
14868235--14868277	22	2.0	22	90	0	68	48	4	9	37	1.56
14868428--14868459	2	16.0	2	93	0	55	46	0	3	50	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120