genome.fa.s146.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  10  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071701--1071753	26	2.0	26	88	0	79	28	28	20	22	1.99
1074387--1074439	26	2.0	26	92	0	88	30	22	18	28	1.98
1072609--1075083	907	2.7	895	86	3	3472	25	24	24	25	2.00
1074508--1076551	699	2.9	699	89	2	3035	26	23	23	26	2.00
1076677--1076729	26	2.0	26	92	0	88	26	22	20	30	1.98
1075855--1078344	887	2.8	892	86	3	3523	26	24	23	25	2.00
1079162--1079214	26	2.0	26	96	0	97	26	24	20	28	1.99
1080062--1080114	26	2.0	26	92	0	88	26	22	22	28	1.99
1078298--1080852	900	2.9	900	96	1	4557	25	25	24	24	2.00
1080088--1081568	712	2.1	713	90	1	2340	26	24	23	25	2.00
1081674--1081726	26	2.0	26	96	0	97	26	24	20	28	1.99
1082236--1082285	26	1.9	26	100	0	100	26	22	20	32	1.98
1083135--1083182	25	1.9	25	95	0	87	27	29	18	25	1.98
1082056--1093455	902	12.9	899	84	4	13703	25	24	24	25	2.00
1084038--1084090	26	2.0	26	92	0	88	28	26	18	26	1.98
1088438--1088490	26	2.0	26	92	0	88	30	26	16	26	1.97
1086654--1093455	908	7.6	896	85	4	8668	25	24	24	25	2.00
1089307--1089359	26	2.0	26	88	0	79	30	20	20	28	1.98
1091054--1091110	26	2.2	26	96	0	105	26	26	19	28	1.99
1088925--1093455	896	5.1	894	85	3	5825	26	24	24	25	2.00
1092858--1092909	25	2.0	26	96	3	97	25	26	21	26	1.99
1093558--1093610	26	2.0	26	88	0	79	30	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094455--1094507	26	2.0	26	96	0	97	26	24	22	26	2.00
1095339--1095392	27	2.1	26	89	6	83	27	24	20	27	1.99
1093534--1096046	897	2.8	882	85	5	3219	25	24	23	25	2.00
1096083--1096135	26	2.0	26	96	0	97	28	26	18	26	1.98
1095340--1096853	744	2.0	740	88	4	2223	26	24	22	25	2.00
1096986--1097038	26	2.0	26	100	0	106	26	26	20	26	1.99
1099745--1099796	25	2.0	26	96	3	97	25	26	21	26	1.99
1098074--1100341	904	2.5	889	86	4	3045	26	23	23	25	2.00
1100448--1100503	27	2.1	27	89	0	85	30	19	23	26	1.98
1101350--1101402	26	2.0	26	96	0	97	26	24	22	26	2.00
1102244--1102296	26	2.0	26	96	0	97	26	24	22	26	2.00
1100446--1102951	894	2.8	890	87	3	3465	26	24	23	25	2.00
1102987--1103039	26	2.0	26	96	0	97	28	26	18	26	1.98
1102241--1103683	749	1.9	743	90	2	2324	26	24	22	25	2.00
1107456--1107508	26	2.0	26	96	0	97	28	26	18	26	1.98
1108350--1108402	26	2.0	26	96	0	97	30	24	16	28	1.97
1102955--1110112	901	8.0	890	84	6	8317	25	24	24	25	2.00
1109251--1109303	26	2.0	26	92	0	88	28	24	18	28	1.98
1111810--1111859	26	2.0	25	96	4	91	26	28	18	28	1.98
1110136--1114380	897	4.7	900	85	2	5431	26	24	23	25	2.00
1112711--1112763	26	2.0	26	92	0	88	26	22	22	28	1.99
1113606--1113658	26	2.1	26	89	3	81	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115182--1115234	26	2.0	26	96	0	97	26	28	20	24	1.99
1116059--1116110	26	2.0	26	92	0	86	26	26	17	28	1.97
1116961--1117013	26	2.0	26	92	0	88	26	22	22	28	1.99
1117848--1117900	26	2.0	26	96	0	97	28	26	18	26	1.98
1119645--1119697	26	2.0	26	92	0	88	28	24	20	26	1.99
1115155--1122330	903	8.1	901	84	5	8488	25	24	24	24	2.00
1122794--1122846	26	2.0	26	100	0	106	26	26	20	26	1.99
1123697--1123749	26	2.0	26	96	0	97	26	24	22	26	2.00
1122605--1127786	903	5.8	899	87	3	6817	25	25	24	24	2.00
1126360--1126411	25	2.0	26	92	3	88	28	25	21	25	1.99
1127262--1127340	26	3.0	26	94	0	140	29	25	17	27	1.98
1129181--1129233	26	2.0	26	92	0	88	24	24	20	30	1.99
1130073--1130125	26	2.0	26	92	0	88	26	22	20	30	1.98
1130819--1130871	26	2.0	26	92	0	88	26	26	20	26	1.99
1129713--1131189	746	2.0	736	85	4	2015	22	26	25	24	2.00
1131814--1131866	26	2.0	26	96	0	97	26	24	20	28	1.99
1132705--1132757	26	2.0	26	88	0	79	28	22	18	30	1.98
1133451--1133503	26	2.0	26	96	0	97	26	28	20	24	1.99
1133091--1172294	901	43.9	900	80	8	38347	25	24	24	25	2.00
1135224--1135279	26	2.2	26	96	0	103	30	25	17	26	1.97
1136986--1137038	26	2.0	26	96	0	97	26	24	20	28	1.99
1137892--1137944	26	2.0	26	88	0	79	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1142292--1142342	26	2.0	26	92	0	84	23	29	17	29	1.97
1144085--1144163	26	3.0	26	98	0	149	26	24	20	29	1.99
1145007--1145059	26	2.0	26	92	0	88	24	26	20	28	1.99
1145908--1145960	26	2.0	26	85	0	70	26	24	18	30	1.98
1146756--1146806	26	2.0	26	96	0	93	27	27	17	27	1.98
1147658--1147710	26	2.0	26	92	0	88	28	24	18	28	1.98
1150325--1150377	26	2.0	26	92	0	88	30	26	16	26	1.97
1152125--1152177	26	2.0	26	85	7	72	32	24	16	26	1.97
1153897--1153949	26	2.0	26	92	0	88	28	26	16	28	1.97
1154766--1154818	26	2.0	26	92	0	88	28	24	18	28	1.98
1156562--1156597	17	2.1	17	94	0	63	25	27	16	30	1.97
1157295--1157347	26	2.0	26	96	0	97	28	26	18	26	1.98
1158035--1158384	159	2.2	159	92	0	574	19	29	30	20	1.97
1159040--1159092	26	2.0	26	88	0	79	32	30	13	24	1.93
1159378--1159430	26	2.0	26	85	7	72	30	28	16	24	1.97
1162064--1162115	25	2.0	26	88	3	79	28	19	23	28	1.98
1163817--1163869	26	2.0	26	92	0	88	30	22	18	28	1.98
1162942--1181288	892	20.5	891	75	11	12951	25	25	24	25	2.00
1167354--1167406	26	2.0	26	89	7	81	32	26	15	26	1.95
1169141--1169193	26	2.0	26	92	0	88	28	28	18	24	1.98
1170049--1170099	26	2.0	26	84	0	66	27	23	19	29	1.98
1168254--1172294	908	4.5	898	85	4	5172	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170960--1171012	26	2.0	26	96	0	97	28	26	16	28	1.97
1171852--1171904	26	2.0	26	96	0	97	28	26	18	26	1.98
1172619--1172671	26	2.0	26	89	7	81	28	26	16	28	1.97
1173512--1173565	26	2.0	27	89	10	85	29	22	20	27	1.98
1172293--1174426	882	2.4	884	86	4	2924	25	25	24	24	2.00
1174209--1174660	234	1.9	234	87	0	652	16	30	29	23	1.96
1174637--1174689	26	2.0	26	92	0	88	26	22	20	30	1.98
1175522--1175577	26	2.2	26	90	0	85	32	21	17	28	1.96
1176411--1176463	26	2.0	26	92	0	88	26	22	22	28	1.99
1177486--1177516	12	2.6	12	100	0	62	12	29	19	38	1.89
1178165--1178216	26	2.0	26	100	0	104	30	23	19	26	1.98
1179066--1179118	26	2.0	26	100	0	106	30	26	16	26	1.97
1174443--1181289	903	7.8	897	82	7	7510	25	25	24	25	2.00
1180786--1180838	26	2.0	26	88	0	79	28	24	16	30	1.97
1181453--1181505	26	2.0	26	100	0	106	26	26	20	26	1.99
1182349--1182401	26	2.0	26	89	7	81	32	26	15	26	1.95
1183244--1183296	26	2.0	26	96	0	97	26	24	20	28	1.99
1184098--1184150	26	2.0	26	92	0	88	24	28	18	28	1.98
1183660--1186795	874	3.6	866	84	6	3797	25	25	24	24	2.00
1185871--1185921	26	2.0	26	92	0	84	29	27	15	27	1.96
1181381--1186775	902	6.1	887	83	6	6289	25	25	24	25	2.00
1187981--1188033	26	2.0	26	89	7	81	28	24	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1188651--1189025	159	2.4	159	85	3	488	19	30	29	21	1.97
1188999--1189077	26	3.0	25	94	3	131	26	24	21	27	1.99
1189273--1189313	20	2.0	20	90	0	64	17	36	2	43	1.62
1190848--1190900	26	2.0	26	92	0	88	28	24	20	26	1.99
1192038--1192305	133	2.0	133	91	1	439	28	17	17	36	1.92
1192789--1192841	26	2.0	26	96	0	97	28	26	18	26	1.98
1192922--1192950	11	2.6	11	100	0	58	24	41	24	10	1.86
1193698--1193750	26	2.0	26	96	0	97	26	24	20	28	1.99
1192171--1197411	870	5.8	898	80	9	5230	26	24	23	25	2.00
1198114--1198165	25	2.0	26	88	3	79	26	25	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120