genome.fa.s146.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  35  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3844691--3844743	26	2.0	26	96	0	97	26	20	24	28	1.99
3846442--3846493	26	2.0	26	96	0	95	28	19	26	25	1.98
3847197--3847249	26	2.0	26	96	0	97	26	18	26	28	1.98
3847911--3847963	26	2.0	26	88	0	79	24	16	28	30	1.97
3848810--3848862	26	2.0	26	96	0	97	28	16	24	30	1.97
3847332--3856941	891	10.7	897	85	4	12361	25	24	24	25	2.00
3849716--3849768	26	2.0	26	85	0	70	28	15	24	32	1.95
3852407--3852456	26	1.9	26	95	0	91	30	20	24	26	1.98
3853311--3853389	26	3.0	26	92	0	131	26	18	25	29	1.98
3855990--3856042	26	2.0	26	96	0	97	30	22	20	26	1.98
3856896--3856967	26	2.8	26	89	0	108	29	15	23	31	1.95
3857661--3857713	26	2.0	26	92	7	90	28	22	22	26	1.99
3858649--3858814	90	1.9	89	81	11	205	19	30	27	21	1.98
3858699--3858853	45	3.4	45	81	1	141	19	30	28	21	1.98
3859615--3859667	26	2.0	26	96	0	97	24	20	28	26	1.99
3861198--3861250	26	2.0	26	100	0	106	26	20	26	26	1.99
3861552--3861600	26	1.9	26	87	4	73	26	18	26	28	1.98
3862504--3862676	45	3.9	44	72	4	143	17	34	30	18	1.94
3863089--3863141	26	2.0	26	92	0	88	28	18	24	28	1.98
3863641--3863691	26	2.0	26	92	0	84	29	19	21	29	1.98
3863286--3863848	197	2.9	196	83	2	637	23	28	26	22	1.99
3865628--3865829	45	4.5	45	74	6	185	18	33	28	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3865615--3865829	90	2.4	89	82	5	238	18	32	28	20	1.96
3866256--3866308	26	2.0	26	96	0	97	26	18	26	28	1.98
3866567--3866619	26	2.0	26	96	0	97	28	20	24	26	1.99
3867562--3867719	45	3.5	44	80	3	172	18	30	29	20	1.97
3868358--3868798	170	2.6	170	77	4	433	23	27	27	21	1.99
3869428--3869452	13	1.9	13	100	0	50	24	16	36	24	1.94
3869463--3869638	45	3.9	45	73	8	151	19	30	30	20	1.97
3869458--3869648	90	2.1	90	82	1	231	19	30	28	20	1.97
3870067--3870119	26	2.0	26	92	0	88	28	18	24	28	1.98
3870422--3870473	25	2.0	26	88	3	79	25	17	26	30	1.97
3873100--3873409	161	1.9	162	84	3	419	23	25	29	21	1.99
3874366--3874417	26	2.0	26	92	0	86	26	17	25	30	1.97
3877362--3877460	45	2.2	45	87	0	135	14	30	35	20	1.92
3877386--3877531	45	3.2	45	77	3	159	17	28	32	21	1.96
3877988--3878064	26	3.0	25	78	3	73	31	18	25	24	1.97
3878367--3878419	26	2.0	26	92	0	88	26	20	26	26	1.99
3881008--3881176	45	3.8	44	75	7	144	16	30	31	21	1.95
3880983--3881176	90	2.2	90	80	0	210	17	30	30	21	1.96
3881501--3881553	26	2.0	26	92	0	88	24	22	28	24	2.00
3882495--3882662	45	3.7	45	72	10	137	18	33	29	18	1.95
3883428--3883480	26	2.0	26	92	0	88	26	20	26	26	1.99
3887078--3887130	26	2.0	26	89	7	81	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3889255--3889408	45	3.4	45	78	1	157	18	31	29	20	1.96
3889634--3889689	27	2.1	27	93	0	94	26	21	32	19	1.97
3890182--3890338	45	3.5	45	84	1	199	17	33	29	18	1.94
3890752--3890804	26	2.0	26	96	0	97	30	15	26	28	1.96
3890777--3891070	158	1.9	158	79	4	342	23	29	27	19	1.98
3892968--3893020	26	2.0	26	85	0	70	24	20	24	30	1.99
3893991--3894167	45	4.0	43	73	8	149	18	32	28	20	1.96
3894617--3894669	26	2.0	26	89	7	81	28	18	22	30	1.98
3895496--3895650	45	3.4	45	75	0	148	16	30	30	21	1.95
3896294--3896346	26	2.0	26	85	0	70	28	15	22	33	1.94
3897167--3897296	45	2.9	45	83	4	138	19	33	27	19	1.96
3897221--3897309	45	2.0	45	90	0	142	20	32	29	17	1.96
3897227--3897329	45	2.3	45	84	3	127	23	33	26	17	1.96
3899013--3899050	13	2.9	13	96	0	67	21	15	39	23	1.92
3905631--3905683	26	2.0	26	96	0	97	26	18	26	28	1.98
3906743--3906883	45	3.1	45	76	0	147	18	29	31	21	1.97
3907700--3907752	26	2.0	26	96	0	97	24	16	28	30	1.97
3907839--3907933	45	2.1	45	88	0	136	20	31	27	21	1.97
3907839--3907964	45	2.8	45	82	0	126	22	30	26	20	1.98
3908978--3909029	26	2.0	25	85	3	68	28	23	23	25	1.99
3909486--3909633	45	3.3	45	81	3	172	18	32	30	18	1.95
3910094--3910146	26	2.0	26	88	0	79	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3910291--3910342	26	2.0	26	88	3	79	26	21	25	26	1.99
3911171--3911223	26	2.0	26	85	7	72	26	18	24	30	1.98
3912859--3912922	26	2.5	26	97	0	119	26	17	31	25	1.97
3913808--3913910	45	2.3	45	79	3	109	18	33	26	21	1.96
3913948--3914008	20	3.0	20	92	0	104	31	34	22	11	1.90
3914865--3914917	26	2.0	26	88	0	79	28	16	24	30	1.97
3916384--3916436	26	2.0	26	88	0	79	28	16	24	30	1.97
3916731--3916782	26	2.0	26	84	0	68	28	17	25	28	1.97
3918392--3918416	13	1.9	13	100	0	50	24	16	36	24	1.94
3919205--3919257	26	2.0	26	85	0	70	26	18	24	30	1.98
3920019--3920176	45	3.5	45	87	0	235	17	33	32	17	1.93
3920498--3920791	159	1.9	158	83	3	385	24	28	27	19	1.99
3921771--3922022	45	5.6	45	70	6	154	17	32	29	19	1.95
3921811--3922012	90	2.3	89	81	4	219	17	31	30	20	1.96
3922814--3922866	26	2.0	26	88	0	79	30	18	18	32	1.96
3922839--3923149	159	2.0	159	81	3	376	22	30	28	18	1.97
3923158--3923210	26	2.0	26	92	0	88	24	18	28	28	1.98
3930081--3930228	45	3.3	45	76	0	161	20	33	29	16	1.94
3931186--3931621	136	3.2	136	82	2	536	25	29	26	19	1.98
3931691--3931844	45	3.4	45	80	1	184	16	31	31	20	1.94
3932303--3932355	26	2.0	26	96	0	97	26	18	26	28	1.98
3933233--3933385	45	3.4	43	77	8	137	16	34	28	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3933261--3933475	45	4.8	44	73	5	162	20	32	27	19	1.97
3933276--3933475	90	2.2	90	80	1	213	21	33	27	18	1.96
3934113--3934165	26	2.0	26	88	0	79	32	16	22	28	1.96
3935106--3935259	45	3.4	45	81	3	175	15	29	33	21	1.94
3935705--3935757	26	2.0	26	92	0	88	28	18	24	28	1.98
3940120--3940172	26	2.0	26	96	0	97	26	18	26	28	1.98
3941518--3941669	45	3.4	45	75	9	148	20	31	28	19	1.97
3941463--3941665	90	2.3	90	82	3	230	19	31	29	20	1.97
3942107--3942158	25	2.0	26	92	3	88	28	19	25	26	1.98
3942131--3942476	159	2.2	159	81	5	412	23	28	28	20	1.99
3942452--3942502	26	2.0	26	92	0	84	25	17	29	27	1.98
3943493--3943542	26	2.0	25	92	4	82	28	16	26	30	1.96
3943846--3943899	26	2.0	27	89	10	85	25	20	25	27	1.99
3944855--3944956	45	2.2	46	86	5	136	20	34	27	17	1.95
3946014--3946119	45	2.4	45	84	6	142	18	32	30	18	1.96
3951289--3951340	25	2.0	26	92	3	88	26	19	25	28	1.98
3952688--3952839	45	3.4	45	75	9	148	20	31	28	19	1.97
3952633--3952835	90	2.3	90	82	3	230	19	31	29	20	1.97
3953279--3953330	25	2.0	26	92	3	88	28	19	25	26	1.98
3953303--3953648	159	2.2	159	81	5	412	23	28	27	20	1.99
3953624--3953674	26	2.0	26	92	0	84	25	17	29	27	1.98
3954665--3954714	26	2.0	25	92	4	82	28	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3955014--3955066	26	2.0	26	92	7	90	26	20	26	26	1.99
3956003--3956121	45	2.6	45	82	0	103	19	33	27	19	1.96
3957188--3957299	45	2.5	45	82	5	145	19	33	30	16	1.95
3959975--3960177	45	4.5	44	74	7	140	19	32	29	19	1.96
3960620--3960670	26	2.0	26	88	7	77	31	17	23	27	1.97
3962463--3962515	26	2.0	26	92	0	88	26	20	26	26	1.99
3962818--3962870	26	2.0	26	92	0	88	26	20	26	26	1.99
3962660--3963025	196	1.9	196	83	3	486	22	30	26	20	1.98
3964447--3964499	26	2.0	26	92	0	88	28	18	24	28	1.98
3964310--3964914	162	3.8	160	74	10	491	23	26	28	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120