genome.fa.s146.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  112  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16622199--16622320	23	5.0	23	66	21	77	54	3	1	40	1.27
16622192--16622313	49	2.6	47	71	13	106	54	3	2	40	1.30
16622256--16622335	23	3.3	24	79	10	74	60	2	1	36	1.18
16622344--16622427	18	5.0	18	72	14	65	44	1	1	53	1.16
16622344--16622423	17	4.6	17	69	13	56	42	1	1	55	1.16
16624847--16624911	29	2.2	30	86	2	87	49	3	3	44	1.33
16635100--16635137	20	1.9	20	94	0	67	23	0	2	73	0.95
16641349--16641374	12	2.2	12	100	0	52	30	0	0	69	0.89
16644108--16644173	18	3.8	18	78	11	66	53	0	0	46	1.00
16644124--16644191	12	5.7	12	72	6	66	54	0	0	45	0.99
16644131--16644184	18	3.1	18	76	15	60	55	0	0	44	0.99
16644149--16644203	24	2.3	24	77	0	65	61	0	1	36	1.06
16644131--16644207	36	2.2	35	84	9	95	58	0	1	40	1.06
16644846--16644899	23	2.2	24	74	6	56	27	9	0	62	1.25
16646720--16646883	85	1.9	86	85	6	226	40	12	9	37	1.76
16655899--16656193	148	2.0	148	100	0	590	35	18	13	32	1.90
16661285--16661317	13	2.5	13	81	18	50	78	0	18	3	0.87
16661872--16661896	2	12.5	2	100	0	50	48	0	0	52	1.00
16666849--16666922	30	2.3	31	82	15	89	56	5	0	37	1.22
16666869--16666931	30	2.1	30	85	2	83	53	6	3	36	1.42
16667975--16667999	9	2.8	9	100	0	50	44	0	0	56	0.99
16671133--16671157	12	2.1	12	100	0	50	76	0	16	8	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16682799--16682847	21	2.4	22	83	10	59	48	2	2	46	1.25
16688455--16688489	17	2.1	17	88	0	52	77	5	0	17	0.96
16701554--16701609	13	4.5	13	76	8	55	64	1	1	32	1.14
16701673--16701749	31	2.5	31	85	6	95	51	1	2	44	1.23
16702015--16702051	13	2.6	15	83	12	51	21	8	8	62	1.49
16704950--16705034	43	2.0	42	93	2	143	28	9	28	34	1.88
16713568--16713600	16	2.0	17	94	5	59	48	6	0	45	1.27
16714122--16714150	14	2.1	14	93	6	51	65	6	0	27	1.18
16714328--16714407	40	2.0	41	82	7	101	48	0	2	48	1.14
16715649--16715678	15	2.0	15	93	0	51	50	0	0	50	1.00
16718877--16719013	68	2.0	68	100	0	274	24	11	27	36	1.90
16721670--16721729	18	3.4	18	73	17	54	35	3	0	61	1.12
16721670--16721721	17	3.0	17	76	18	54	36	3	0	59	1.16
16722356--16722395	15	2.7	14	84	7	53	62	2	0	35	1.09
16722749--16722793	24	1.9	23	86	13	65	55	4	0	40	1.20
16726916--16726968	10	5.4	9	88	8	61	54	3	0	41	1.18
16726916--16726968	9	5.4	10	88	6	65	54	3	0	41	1.18
16726926--16726968	5	8.8	5	80	14	54	55	0	0	44	0.99
16726944--16726995	27	1.9	27	84	7	70	55	1	1	40	1.22
16727913--16727970	29	2.0	30	89	3	91	53	1	3	41	1.28
16729016--16729042	2	13.5	2	100	0	54	51	0	0	48	1.00
16731911--16732088	89	2.0	89	100	0	356	31	10	30	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16734191--16734225	2	18.0	2	94	5	63	48	0	0	51	1.00
16735227--16735324	33	3.0	33	89	0	151	15	41	21	21	1.89
16736981--16737022	22	2.0	22	90	4	68	45	0	0	54	0.99
16737081--16737130	19	2.6	20	71	9	50	42	0	6	52	1.26
16747309--16747335	9	3.0	9	100	0	54	55	0	33	11	1.35
16749066--16749090	2	12.5	2	100	0	50	52	48	0	0	1.00
16752729--16752786	22	2.7	23	82	10	61	50	6	1	41	1.39
16768370--16768440	28	2.5	28	100	0	142	63	8	12	15	1.51
16780700--16780724	3	8.3	3	100	0	50	32	32	0	36	1.58
16781514--16781571	24	2.3	25	79	8	64	51	12	13	22	1.74
16782784--16782822	2	19.5	2	100	0	78	48	0	0	51	1.00
16783154--16783210	29	2.0	29	100	0	114	17	19	14	49	1.80
16790300--16790328	15	2.0	15	93	6	51	65	13	0	20	1.26
16790439--16790465	11	2.5	11	100	0	54	51	0	0	48	1.00
16790760--16790813	27	2.0	27	85	7	74	42	3	3	50	1.38
16795290--16795322	2	17.0	2	87	6	50	54	0	0	45	0.99
16799049--16799860	199	4.0	200	82	5	929	40	11	15	32	1.84
16800856--16800994	58	2.5	55	77	13	165	45	6	14	33	1.70
16800856--16801015	58	2.8	53	76	15	151	45	7	13	33	1.72
16801007--16801125	61	2.0	61	82	0	148	40	9	18	31	1.82
16801059--16801504	184	2.4	182	77	10	429	41	10	14	33	1.80
16801342--16801492	62	2.4	62	82	4	180	43	7	15	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16801955--16802024	34	2.1	34	86	5	97	21	17	15	45	1.85
16805777--16805832	14	3.9	14	75	9	51	60	0	0	39	0.97
16805760--16805804	22	2.0	22	83	8	56	51	4	2	42	1.34
16805791--16805815	8	3.1	8	100	0	50	76	0	0	24	0.80
16807256--16807290	2	17.5	2	100	0	70	51	0	0	48	1.00
16808620--16808669	23	2.2	23	92	0	82	42	0	12	46	1.41
16808628--16808677	23	2.2	23	96	0	91	40	0	8	52	1.31
16811032--16811065	17	2.1	15	89	10	50	50	0	2	47	1.16
16812932--16812981	20	2.4	20	80	6	55	48	0	2	50	1.12
16812932--16812977	22	2.1	22	84	8	58	43	0	2	54	1.12
16812931--16812982	21	2.5	20	78	12	52	48	0	1	50	1.12
16814131--16814868	21	35.2	20	68	19	134	33	6	9	50	1.62
16814078--16814254	90	2.0	89	85	1	237	28	7	10	53	1.63
16814344--16814403	20	3.0	21	87	4	79	38	5	5	51	1.45
16814362--16814496	30	4.4	30	69	19	91	36	6	8	48	1.59
16814281--16814512	113	2.1	113	86	4	317	36	6	8	48	1.61
16814394--16814512	62	1.9	63	83	11	156	36	7	8	47	1.62
16814549--16814728	10	17.8	10	68	16	86	31	4	12	51	1.59
16814799--16814841	10	4.3	10	80	8	52	41	6	2	48	1.43
16814781--16814868	41	2.1	41	85	4	115	38	7	3	50	1.49
16816934--16816968	15	2.3	15	90	0	52	54	0	0	45	0.99
16816911--16816987	38	2.0	38	82	9	95	50	3	0	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16816952--16817004	21	2.4	23	78	12	65	50	3	0	45	1.19
16819389--16819427	3	13.0	3	88	0	60	28	0	5	66	1.12
16824711--16824762	22	2.4	22	83	6	61	46	7	1	44	1.43
16831751--16831792	6	6.8	6	89	5	66	30	0	2	66	1.04
16831753--16831792	13	3.2	13	89	7	64	27	0	2	70	1.01
16831751--16831792	19	2.3	18	91	4	66	30	0	2	66	1.04
16831791--16831881	3	32.7	3	77	16	72	21	1	3	73	1.04
16831813--16831885	8	9.2	8	73	7	51	17	1	2	78	0.95
16831790--16831883	14	6.8	14	72	15	79	21	1	3	74	1.02
16831790--16831884	23	4.1	23	74	17	90	21	1	3	74	1.01
16832653--16832685	17	1.9	17	88	11	50	21	0	3	75	0.93
16832738--16832796	25	2.3	25	80	8	66	45	5	6	42	1.52
16832887--16832915	8	3.8	8	90	9	51	79	0	0	20	0.74
16832955--16833269	170	1.8	175	86	3	460	41	7	12	38	1.72
16843807--16843858	27	1.9	27	84	7	70	76	0	3	19	0.93
16845186--16845229	3	15.3	3	86	9	65	29	0	0	70	0.88
16846136--16846188	26	2.0	26	88	0	79	45	0	7	47	1.31
16846267--16846327	16	3.6	16	75	12	59	75	1	0	22	0.89
16846332--16846660	171	1.9	179	83	7	444	40	6	12	40	1.70
16849848--16849919	31	2.3	31	82	0	90	45	4	0	50	1.21
16849868--16849919	16	3.3	16	72	5	52	48	3	0	48	1.20
16852522--16852559	19	2.0	20	94	5	69	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16852522--16852559	20	1.9	19	89	5	58	31	0	0	68	0.90
16853726--16853779	24	2.3	23	80	3	63	61	0	0	38	0.96
16853747--16853792	22	2.1	21	84	4	56	54	2	0	43	1.12
16854354--16854405	21	2.4	21	77	3	59	50	0	0	50	1.00
16854442--16854479	17	2.2	18	86	13	53	63	2	0	34	1.09
16857930--16857992	16	3.8	16	75	22	58	36	0	0	63	0.95
16857926--16857977	20	2.7	18	78	18	59	34	0	0	65	0.93
16858003--16858227	6	37.5	6	66	21	89	47	2	1	48	1.22
16858027--16858128	42	2.3	45	83	14	124	44	1	0	52	1.18
16858119--16858205	11	7.1	12	70	16	54	51	2	1	44	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120