genome.fa.s146.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  97  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13097717--13097912	65	3.0	65	75	4	153	25	20	7	46	1.76
13097886--13098037	66	2.3	66	86	3	207	21	14	11	53	1.71
13098517--13098573	3	19.0	3	100	0	114	33	0	0	66	0.92
13103173--13103202	3	10.0	3	100	0	60	0	0	33	66	0.92
13103201--13103242	3	14.0	3	100	0	84	33	0	0	66	0.92
13108512--13108563	18	2.9	18	85	0	77	30	5	32	30	1.81
13118148--13118208	31	2.0	31	84	12	81	40	32	0	26	1.56
13118144--13118212	22	3.1	22	77	8	68	43	31	0	24	1.55
13118965--13119044	34	2.4	34	82	0	88	47	2	7	42	1.45
13119498--13119540	2	21.5	2	100	0	86	0	51	0	48	1.00
13124249--13124312	24	2.5	24	73	14	58	53	1	0	45	1.10
13124557--13124604	18	2.6	19	77	9	55	70	6	4	18	1.25
13131259--13131298	20	2.0	20	85	9	55	10	10	0	80	0.92
13133519--13133552	16	2.1	17	88	5	52	29	0	0	70	0.87
13133516--13133552	18	2.1	18	90	5	58	29	0	0	70	0.88
13133899--13133932	13	2.6	13	90	0	50	44	0	2	52	1.16
13135391--13135444	27	2.0	26	85	3	72	51	0	0	48	1.00
13136069--13136106	2	19.0	2	100	0	76	0	50	0	50	1.00
13145254--13145324	28	2.6	26	72	12	61	52	0	1	46	1.09
13145887--13145924	14	2.5	15	83	12	51	63	0	0	36	0.95
13145893--13145928	14	2.6	14	91	8	56	58	0	0	41	0.98
13156722--13156832	53	2.1	53	98	0	213	17	15	9	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13164793--13164827	18	2.0	17	94	5	61	65	0	0	34	0.93
13165391--13165482	37	2.5	38	80	3	107	64	7	2	26	1.32
13165660--13165698	14	2.9	13	81	7	51	79	0	0	20	0.73
13165843--13165925	9	9.6	9	68	12	57	28	2	4	63	1.27
13165840--13165891	26	2.0	26	92	7	88	32	3	5	57	1.40
13165843--13165924	17	4.8	17	72	18	64	29	2	4	63	1.28
13165873--13165917	17	2.6	17	83	10	65	31	2	2	64	1.18
13165843--13165934	26	3.5	26	73	7	71	27	2	5	65	1.26
13165843--13165934	18	5.3	18	72	11	66	27	2	5	65	1.26
13170603--13170638	12	2.8	13	83	8	56	25	2	16	55	1.55
13174710--13174742	15	2.1	16	94	5	59	69	0	30	0	0.88
13174710--13174743	5	6.8	5	86	0	50	67	0	32	0	0.91
13175576--13175643	34	2.0	34	94	0	118	26	19	10	44	1.82
13181997--13182060	18	3.7	18	73	26	50	46	0	1	51	1.10
13184467--13184515	22	2.2	22	82	10	64	46	2	0	51	1.12
13184793--13184848	26	2.2	26	84	12	71	46	0	5	48	1.25
13191054--13191115	32	1.9	32	93	0	106	29	9	12	48	1.73
13194376--13194408	2	17.0	2	93	6	59	51	0	0	48	1.00
13203863--13203954	17	5.1	18	71	21	59	51	0	1	47	1.07
13203855--13203916	24	2.5	25	80	10	74	51	0	1	46	1.10
13203898--13203924	14	1.9	14	100	0	54	44	0	0	55	0.99
13203844--13203919	35	2.1	36	82	2	91	50	1	1	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13203926--13203959	17	2.1	16	88	5	50	52	0	0	47	1.00
13204015--13204143	26	4.9	26	73	21	83	43	1	0	54	1.15
13204038--13204153	13	7.6	16	72	21	88	46	0	0	52	1.06
13204061--13204142	24	3.1	28	78	20	79	45	0	1	53	1.08
13204061--13204136	18	4.3	19	80	14	83	46	0	1	52	1.08
13209065--13209265	100	2.0	100	94	0	348	30	19	15	34	1.93
13220724--13220758	14	2.6	13	90	4	52	40	0	2	57	1.14
13221741--13221783	4	10.8	4	100	0	86	25	0	23	51	1.49
13232258--13232353	45	2.1	45	92	0	156	20	29	17	32	1.96
13244691--13244772	38	2.2	37	84	8	103	39	7	4	48	1.52
13244957--13245048	4	23.2	4	76	8	73	71	5	3	19	1.19
13245389--13245447	29	2.1	28	83	3	73	42	0	1	55	1.09
13245425--13245470	21	2.2	21	92	0	74	45	0	0	54	0.99
13246380--13246450	6	11.8	6	81	4	81	60	4	1	33	1.25
13246380--13246449	24	3.0	23	87	6	104	61	4	1	32	1.24
13246946--13246977	2	16.0	2	100	0	64	50	0	0	50	1.00
13246975--13247001	4	6.8	4	100	0	54	25	0	22	51	1.48
13257954--13258020	25	2.6	24	74	19	64	71	1	1	25	1.03
13259297--13259330	16	2.2	16	94	5	61	64	0	0	35	0.94
13260170--13260206	12	2.9	14	80	19	53	75	18	0	5	0.99
13262378--13262444	35	1.9	35	84	0	89	37	8	14	38	1.78
13263538--13263574	15	2.5	15	100	0	74	40	24	8	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13266529--13266735	62	3.3	61	67	16	147	43	7	12	35	1.71
13266507--13266731	124	1.8	124	86	3	328	43	8	11	36	1.72
13266840--13267012	63	2.7	63	84	4	222	46	6	7	39	1.59
13266654--13267152	244	2.0	246	80	7	557	43	8	10	37	1.69
13268777--13268861	31	3.1	27	80	13	86	70	3	0	25	1.03
13268823--13268861	5	7.8	5	82	0	51	79	2	0	17	0.84
13268823--13268860	20	1.9	20	88	0	58	78	2	0	18	0.86
13269817--13270462	81	8.2	76	77	8	325	40	18	13	27	1.87
13269822--13270430	40	15.2	40	76	5	412	40	18	13	27	1.88
13269831--13270315	81	6.0	82	83	4	413	40	18	13	26	1.88
13269966--13270430	122	3.8	121	80	4	440	41	16	13	27	1.87
13269822--13270430	203	3.0	201	81	4	635	40	18	13	27	1.88
13270547--13270638	40	2.3	40	85	5	116	42	16	10	30	1.82
13285863--13285901	8	4.9	8	90	0	51	35	0	12	51	1.40
13287729--13287768	21	1.9	20	85	10	53	42	10	5	42	1.60
13289607--13289631	12	2.1	12	100	0	50	48	8	8	36	1.62
13290781--13290835	11	4.7	11	78	10	56	9	0	10	80	0.92
13290778--13290839	13	5.0	12	70	14	54	8	0	11	80	0.90
13290801--13290838	16	2.6	14	88	12	51	10	0	7	81	0.87
13290903--13290964	25	2.5	25	84	5	72	45	1	9	43	1.46
13291227--13291422	53	3.7	53	74	11	170	55	7	11	25	1.62
13295476--13295584	11	10.2	11	75	18	88	76	0	13	10	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13295488--13295575	8	9.8	8	78	19	61	77	0	13	9	0.99
13295475--13295584	21	5.2	20	77	12	105	75	0	14	10	1.04
13295487--13295577	9	9.9	9	79	15	98	76	0	13	9	1.01
13296868--13296983	59	2.0	58	83	5	144	33	14	19	31	1.92
13297262--13297511	42	6.0	41	85	7	299	22	12	21	44	1.85
13297262--13297478	83	2.6	82	88	3	310	22	11	20	45	1.82
13309553--13309590	2	19.0	2	100	0	76	50	0	0	50	1.00
13310979--13311021	2	22.0	2	90	4	70	46	0	0	53	1.00
13317883--13317940	22	2.6	22	86	5	73	48	0	0	51	1.00
13317883--13317934	7	7.1	7	77	14	52	46	0	0	53	1.00
13317964--13318018	15	3.6	15	80	4	65	56	0	1	41	1.10
13318170--13318218	22	2.3	22	85	3	64	40	0	2	57	1.10
13319062--13319100	17	2.4	16	87	12	53	51	0	0	48	1.00
13320181--13320628	99	4.5	99	78	4	454	23	21	16	38	1.92
13320181--13320628	198	2.3	198	84	4	548	23	21	16	38	1.92
13325764--13325804	16	2.7	16	85	11	59	43	2	2	51	1.28
13326235--13326273	15	2.4	16	83	12	53	20	0	7	71	1.10
13326801--13326840	18	2.2	18	90	0	62	27	7	2	62	1.35
13330875--13331009	61	2.2	61	79	10	141	37	18	11	33	1.86
13332108--13332176	35	2.0	35	82	5	86	39	8	13	39	1.75
13335991--13336386	185	2.1	185	83	5	489	40	12	11	35	1.80
13336561--13336803	124	2.0	117	79	12	255	36	16	14	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13336752--13337179	186	2.3	185	83	2	536	41	10	13	34	1.79
13345133--13345231	34	2.9	35	74	8	103	31	13	16	39	1.86
13345133--13345218	35	2.5	35	77	9	95	33	13	13	38	1.85
13354267--13354488	63	3.6	62	75	11	204	40	9	13	36	1.77
13365130--13365171	17	2.3	18	80	19	52	57	0	2	40	1.12
13367970--13368013	14	3.1	14	83	3	52	45	6	4	43	1.51
13368379--13368416	16	2.5	15	87	8	51	71	2	0	26	1.00
13368513--13368544	6	5.2	6	92	7	55	68	0	0	31	0.90
13373017--13373051	17	2.1	17	88	0	52	22	5	8	62	1.45
13381738--13381854	48	2.4	48	86	1	162	44	14	9	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120