genome.fa.s146.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  36  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3964768--3964820	26	2.0	26	100	0	106	26	16	26	30	1.97
3964308--3965040	321	2.3	320	81	4	868	24	27	28	20	1.99
3964308--3965080	158	4.8	158	72	10	486	23	27	28	20	1.99
3965544--3965601	26	2.2	27	81	3	64	25	5	8	60	1.47
3966109--3966270	45	3.6	45	79	5	141	17	31	31	19	1.95
3966714--3966766	26	2.0	26	92	0	88	26	16	26	30	1.97
3967987--3968040	23	2.3	23	100	0	108	24	14	37	24	1.93
3968415--3968841	158	2.7	158	82	1	525	25	27	27	20	1.99
3968863--3968915	26	2.0	26	92	0	88	30	20	22	26	1.98
3969219--3969271	26	2.0	26	85	0	70	26	16	26	30	1.97
3970155--3970369	45	4.8	45	79	3	146	17	32	30	20	1.95
3970206--3970369	90	1.8	90	87	0	238	18	32	30	18	1.95
3970212--3970369	45	3.5	45	82	0	199	18	32	29	18	1.95
3971140--3971192	26	2.0	26	96	0	97	26	18	30	24	1.98
3972128--3972180	26	2.0	26	88	0	79	26	16	24	32	1.97
3973126--3973325	45	4.4	45	71	5	161	16	32	31	20	1.94
3973126--3973325	90	2.2	90	83	3	242	16	32	31	20	1.94
3973768--3973820	26	2.0	26	100	0	106	26	20	26	26	1.99
3980646--3980772	45	2.8	44	75	4	112	18	33	26	21	1.97
3980658--3980830	90	1.9	90	83	4	224	18	32	28	20	1.96
3981302--3981354	26	2.0	26	92	0	88	30	20	20	28	1.98
3981328--3981671	158	2.2	159	78	4	354	27	28	23	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3982570--3982594	13	1.9	13	100	0	50	24	16	36	24	1.94
3982631--3982754	45	2.8	45	78	0	140	16	35	30	17	1.92
3983485--3983534	26	1.9	26	91	0	82	30	20	24	26	1.98
3983838--3983890	26	2.0	26	96	0	97	24	20	28	26	1.99
3985016--3985067	26	2.0	25	88	3	77	28	21	23	26	1.99
3993210--3993262	26	2.0	26	92	0	88	24	18	28	28	1.98
3994249--3994366	45	2.6	45	80	0	146	21	29	28	20	1.98
3994806--3994884	26	3.0	26	98	0	149	26	20	24	29	1.99
3995188--3995243	29	2.0	26	86	10	76	26	16	26	30	1.96
3996209--3996354	45	3.2	44	75	5	132	21	30	29	19	1.97
3997012--3997488	184	2.6	184	92	1	780	21	28	29	20	1.98
3998406--3998458	26	2.0	26	88	0	79	24	20	28	26	1.99
3999457--3999509	26	2.0	26	96	0	97	28	16	24	30	1.97
3999813--3999865	26	2.0	26	92	0	88	26	20	26	26	1.99
4000809--4000961	45	3.4	45	76	8	114	19	33	30	16	1.94
4000830--4000965	45	3.0	45	78	0	155	16	32	33	17	1.93
4001405--4001456	26	2.0	25	92	3	86	26	15	26	30	1.96
4001429--4001845	158	2.6	158	81	7	474	25	28	28	17	1.98
4002542--4002699	45	3.5	45	79	0	172	18	32	31	17	1.94
4003336--4003388	26	2.0	26	92	0	88	28	18	24	28	1.98
4015127--4015269	45	3.2	43	80	4	142	19	29	30	20	1.97
4015149--4015312	45	3.6	45	80	3	179	17	28	31	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4015139--4015312	90	1.9	90	84	2	233	18	27	32	21	1.97
4016117--4016169	26	2.0	26	88	0	79	24	16	28	30	1.97
4017013--4017127	45	2.6	45	80	0	140	19	32	30	18	1.95
4017567--4017645	26	3.0	26	88	3	115	27	16	25	30	1.97
4017950--4018000	25	2.0	25	88	7	77	25	21	23	29	1.99
4017594--4018457	353	2.4	354	82	4	1044	22	28	27	21	1.99
4018463--4018622	45	3.6	45	77	1	151	20	31	28	20	1.97
4019410--4019462	26	2.0	26	85	7	72	28	18	24	28	1.98
4019239--4019617	196	1.9	196	81	3	449	23	27	27	21	1.99
4020783--4020833	26	2.0	26	92	0	84	31	15	23	29	1.95
4020809--4021253	158	2.8	158	77	7	402	24	28	28	18	1.98
4022102--4022256	45	3.5	43	71	10	123	17	30	32	20	1.95
4023866--4023918	26	2.0	26	88	0	79	30	18	24	26	1.98
4023891--4024186	159	1.9	159	80	4	346	23	28	28	19	1.99
4024222--4024274	26	2.0	26	92	0	88	26	20	26	26	1.99
4025212--4025384	45	3.8	45	78	0	175	18	32	30	19	1.95
4025812--4025864	26	2.0	26	92	0	88	30	16	22	30	1.96
4026141--4026193	26	2.0	26	92	0	88	26	16	26	30	1.97
4027040--4027147	45	2.4	46	76	7	114	18	26	32	22	1.97
4027962--4028017	26	2.2	26	93	0	94	23	21	26	28	1.99
4028917--4029207	45	6.5	45	78	0	251	18	31	30	19	1.96
4029001--4029207	90	2.3	90	85	0	279	18	30	30	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4029673--4029966	159	1.8	159	80	8	357	23	28	28	19	1.98
4030002--4030054	26	2.0	26	89	7	81	26	18	26	28	1.98
4030995--4031148	45	3.4	45	79	1	175	15	31	32	20	1.94
4031786--4031838	26	2.0	26	88	0	79	26	20	24	28	1.99
4033283--4033335	26	2.0	26	100	0	106	33	20	18	26	1.96
4033467--4033845	196	1.9	196	80	3	440	22	29	27	20	1.99
4035171--4035223	26	2.0	26	100	0	106	33	20	18	26	1.96
4040917--4041033	45	2.6	45	73	10	103	24	31	25	17	1.97
4041483--4041535	26	2.0	26	92	0	88	30	16	22	30	1.96
4041838--4041890	26	2.0	26	96	0	97	24	20	28	26	1.99
4042976--4043340	196	1.9	195	81	4	448	21	29	27	21	1.99
4044105--4044256	45	3.4	46	77	9	161	18	32	28	20	1.96
4044130--4044275	45	3.2	44	77	5	141	21	32	26	18	1.97
4044762--4044812	26	2.0	26	100	0	102	27	19	25	27	1.99
4047123--4047322	90	2.2	90	80	0	220	20	33	27	19	1.96
4047120--4047325	45	4.6	45	75	1	180	19	33	27	19	1.97
4047765--4047817	26	2.0	26	92	0	88	30	20	24	24	1.99
4048131--4048183	26	2.0	26	96	0	97	24	20	28	26	1.99
4054918--4055075	45	3.5	45	78	6	169	20	32	27	19	1.97
4056831--4057007	90	2.0	90	80	4	205	16	30	29	23	1.96
4056807--4057049	45	5.4	45	72	4	141	17	31	29	22	1.96
4057815--4057867	26	2.0	26	96	0	97	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4058723--4058968	45	5.5	45	74	4	147	19	30	29	21	1.97
4058766--4058968	90	2.3	90	81	1	219	17	31	29	21	1.96
4058823--4059015	45	4.3	45	82	2	210	17	29	32	21	1.96
4058839--4059015	90	2.0	89	84	6	232	15	28	33	21	1.94
4059639--4059694	26	2.2	26	83	0	67	28	17	21	32	1.96
4059488--4060036	194	2.8	195	80	2	670	21	29	27	22	1.99
4060817--4060905	45	2.0	45	84	4	117	15	32	32	19	1.93
4065498--4065585	45	2.0	45	81	4	106	15	34	26	23	1.95
4065554--4065664	45	2.5	45	77	0	123	23	32	24	19	1.98
4066195--4066614	159	2.6	159	86	3	578	22	30	29	16	1.96
4067632--4067829	45	4.4	44	73	6	148	18	34	28	18	1.95
4074528--4074579	26	2.0	26	92	0	86	26	19	26	26	1.99
4075406--4075458	26	2.0	26	88	0	79	35	16	20	26	1.94
4076162--4076374	90	2.4	90	84	1	257	18	31	30	19	1.96
4076152--4076376	45	5.0	45	76	4	202	18	31	30	20	1.96
4076791--4076843	26	2.0	26	92	0	88	28	16	22	32	1.96
4077113--4077168	26	2.2	26	86	0	76	26	19	23	30	1.98
4077846--4077938	45	2.1	45	81	0	105	18	33	31	17	1.94
4078457--4078510	27	2.0	26	89	3	81	27	20	25	25	1.99
4078813--4078865	26	2.0	26	89	7	81	28	20	24	26	1.99
4079810--4079924	45	2.6	45	81	0	131	19	31	32	17	1.95
4080742--4080794	26	2.0	26	85	7	72	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4082223--4082280	26	2.2	27	90	3	91	27	18	22	31	1.97
4083582--4083769	45	4.2	45	73	4	155	17	31	30	20	1.95
4084162--4084214	26	2.0	26	88	0	79	26	16	24	32	1.97
4084513--4084565	26	2.0	26	96	0	97	28	20	24	26	1.99
4084342--4084660	162	2.0	162	81	4	385	23	26	28	21	1.99
4084187--4085241	517	2.1	510	86	2	1443	23	27	27	20	1.99
4084868--4084920	26	2.0	26	92	0	88	26	20	24	28	1.99
4085030--4085082	26	2.0	26	88	0	79	30	18	22	28	1.98
4084859--4085177	162	2.0	162	82	2	390	25	26	27	21	1.99
4085351--4085401	26	2.0	26	88	0	75	27	17	23	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120