genome.fa.s146.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  94  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12615509--12615548	20	2.0	21	85	5	55	50	2	2	45	1.28
12615524--12615574	26	1.9	26	84	4	66	54	5	1	37	1.36
12615855--12615925	37	1.9	37	94	0	124	32	11	11	45	1.75
12620876--12620905	6	5.0	6	91	0	51	3	83	0	13	0.77
12623424--12623453	7	4.3	7	91	0	51	70	3	13	13	1.30
12623546--12623572	10	2.7	10	100	0	54	7	7	44	40	1.60
12625507--12625554	20	2.4	20	86	6	71	50	0	0	50	1.00
12625501--12625554	20	2.4	22	76	20	58	50	0	0	50	1.00
12625497--12625607	50	2.2	52	82	11	140	47	0	0	52	1.00
12627220--12627260	22	1.9	21	90	5	64	68	0	0	31	0.90
12627218--12627266	22	2.3	21	82	3	62	65	0	0	34	0.93
12627222--12627291	30	2.3	30	88	9	99	65	0	0	34	0.93
12628354--12628386	2	16.5	2	100	0	66	51	0	0	48	1.00
12629454--12629504	10	5.1	10	75	17	52	39	0	1	58	1.09
12629441--12629500	18	3.4	18	72	25	56	43	0	3	53	1.17
12629422--12629503	34	2.4	35	80	13	100	42	0	3	53	1.18
12629537--12629580	22	2.0	22	86	4	63	47	4	2	45	1.35
12632428--12632465	16	2.3	17	86	4	51	65	5	7	21	1.38
12635295--12635791	245	2.0	249	89	1	759	32	5	20	41	1.75
12637911--12637960	16	3.1	17	77	11	59	54	2	0	44	1.11
12637912--12637960	15	3.1	16	82	8	64	53	2	0	44	1.12
12647018--12647072	28	2.0	28	100	0	110	36	18	3	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12650407--12650477	25	2.8	24	81	12	88	47	0	2	49	1.16
12650407--12650477	9	8.2	9	72	18	53	47	0	2	49	1.16
12650407--12650472	26	2.6	27	86	9	95	48	0	3	48	1.17
12650441--12650537	16	5.6	16	70	19	61	51	0	2	46	1.12
12650566--12650700	15	8.6	15	71	15	78	41	0	2	54	1.20
12650567--12650706	18	7.6	18	70	19	110	41	0	2	55	1.20
12650570--12650699	23	5.7	23	75	13	115	41	0	3	54	1.21
12658423--12658478	28	2.0	29	85	3	78	48	0	16	35	1.46
12666574--12666619	20	2.3	21	85	7	60	54	2	6	36	1.39
12668774--12668849	33	2.3	33	77	6	84	51	6	17	25	1.69
12668795--12668894	34	3.0	34	75	11	100	50	8	15	27	1.71
12668795--12668929	65	2.1	65	81	0	153	51	8	14	25	1.70
12668906--12669028	34	3.7	32	74	13	99	49	8	17	24	1.74
12668906--12669042	31	4.2	32	73	14	93	49	8	18	24	1.74
12669600--12669648	17	2.9	17	76	8	55	44	12	8	34	1.71
12669695--12669859	17	9.7	17	72	4	73	35	8	19	36	1.82
12669815--12669863	17	2.9	17	93	0	80	28	6	24	40	1.79
12669719--12669938	101	2.2	99	80	4	228	36	11	16	35	1.85
12669856--12669888	17	1.9	17	93	0	57	42	12	12	33	1.79
12670325--12670374	23	2.2	22	82	3	64	48	12	6	34	1.65
12670342--12670504	22	7.2	22	65	10	78	42	14	8	34	1.76
12670347--12670522	46	3.9	46	81	4	157	43	13	9	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12670392--12670522	44	2.9	44	84	4	147	41	13	10	33	1.79
12670456--12670546	22	4.1	22	76	5	94	45	9	12	32	1.74
12671238--12671272	17	2.1	17	88	0	52	74	14	0	11	1.08
12671264--12671295	6	5.3	6	100	0	64	68	0	0	31	0.90
12673137--12673285	79	1.9	79	90	0	235	36	10	15	36	1.82
12679207--12679265	20	3.0	20	72	16	52	49	1	0	49	1.11
12679220--12679327	31	3.5	31	77	5	94	48	0	0	50	1.13
12679249--12679327	30	2.6	31	79	4	79	49	0	1	49	1.09
12679207--12679361	38	4.2	36	71	17	97	47	0	0	51	1.10
12691757--12691813	24	2.4	24	94	2	98	22	42	8	26	1.83
12697886--12697923	21	1.9	20	89	10	60	57	0	0	42	0.98
12706051--12706661	305	2.0	306	97	0	1152	40	8	11	39	1.73
12713374--12714927	160	9.6	161	79	5	1314	34	9	13	42	1.76
12713374--12714926	321	4.8	318	79	6	1306	34	9	13	42	1.76
12721681--12721764	43	2.0	43	84	13	111	48	3	0	47	1.19
12722300--12722365	10	6.5	10	75	13	55	59	7	3	30	1.41
12722322--12722386	31	2.1	29	86	13	87	55	3	4	36	1.36
12722316--12722387	32	2.3	30	83	7	90	54	4	4	37	1.39
12722598--12722629	9	3.6	9	95	0	55	62	12	0	25	1.30
12722592--12722640	9	5.2	9	83	9	53	63	10	0	26	1.26
12722597--12722663	30	2.3	29	84	2	80	61	10	1	26	1.37
12722627--12722689	19	3.3	19	77	4	72	61	9	4	23	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12723176--12723260	44	1.9	45	80	7	102	27	3	8	61	1.41
12723317--12723373	9	5.5	11	74	19	59	26	1	7	64	1.28
12723428--12723511	20	4.2	20	77	4	89	32	1	8	58	1.35
12724363--12724443	29	2.8	29	83	7	94	56	4	0	38	1.21
12724427--12724643	29	7.5	28	65	17	50	48	6	2	42	1.42
12724398--12724590	9	20.0	9	67	13	64	48	6	1	43	1.39
12724498--12724591	10	9.7	9	70	17	64	52	3	3	41	1.33
12725155--12725188	16	2.0	16	88	11	50	29	2	0	67	1.05
12725155--12725189	18	2.0	18	88	5	54	28	2	0	68	1.04
12725166--12725210	23	2.0	23	86	0	63	17	0	2	80	0.82
12725361--12725539	10	17.7	10	71	10	105	34	3	8	53	1.49
12725365--12725540	31	5.8	30	74	14	132	34	3	9	52	1.50
12725380--12725520	61	2.3	61	84	3	169	34	4	9	51	1.53
12725414--12725539	51	2.5	53	76	13	138	34	2	10	53	1.48
12726533--12726567	15	2.3	15	100	0	70	68	22	0	8	1.16
12729881--12729933	3	17.7	3	100	0	106	66	0	0	33	0.92
12741732--12741823	30	3.3	26	80	12	103	38	5	4	52	1.45
12742796--12742839	19	2.4	19	82	17	58	52	0	2	45	1.13
12749888--12749933	2	23.0	2	100	0	92	50	0	50	0	1.00
12750264--12750310	10	4.6	10	75	15	51	44	0	0	55	0.99
12750268--12750307	22	1.9	20	85	10	53	45	0	0	55	0.99
12758270--12758318	4	12.2	4	84	0	62	20	4	2	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12758411--12758518	56	1.9	56	84	7	146	50	4	11	33	1.58
12758638--12758910	59	4.7	58	73	13	211	48	7	10	33	1.66
12769132--12769167	15	2.4	15	95	0	63	19	2	0	77	0.88
12770346--12770389	23	2.0	21	83	12	54	47	4	2	45	1.35
12770397--12770660	56	4.7	56	80	6	309	47	4	10	37	1.59
12774180--12774223	13	3.2	13	87	6	52	75	4	18	2	1.09
12774607--12774663	24	2.4	23	77	13	62	78	0	14	7	0.94
12774593--12774663	13	5.3	13	74	24	51	78	0	14	7	0.94
12775941--12776323	21	18.7	21	72	13	194	39	8	14	36	1.77
12776208--12776533	79	4.0	79	83	7	436	37	11	15	34	1.84
12776346--12776402	21	2.8	21	83	2	71	35	12	15	36	1.85
12776432--12776489	20	2.8	21	81	5	64	36	15	13	34	1.87
12776437--12776490	21	2.7	20	85	2	63	38	12	12	35	1.82
12776338--12776511	88	2.0	88	91	0	285	38	12	14	35	1.83
12776207--12776527	167	2.0	158	87	6	455	37	11	15	35	1.84
12776986--12777029	23	2.0	23	90	4	72	22	15	6	54	1.65
12777014--12777145	38	3.3	41	82	7	146	20	15	18	45	1.85
12777388--12777449	27	2.2	29	80	13	76	20	4	4	69	1.26
12777391--12777454	28	2.3	28	84	7	78	18	6	4	70	1.27
12778627--12778786	58	2.8	59	88	5	238	45	7	10	36	1.67
12779735--12779911	65	2.8	64	81	6	189	54	9	16	19	1.68
12780711--12780925	83	2.6	84	79	6	240	25	21	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12780882--12781093	86	2.5	86	82	4	268	24	21	13	40	1.89
12780873--12781471	85	7.0	85	78	6	444	22	17	14	45	1.84
12780873--12781416	255	2.1	255	80	3	585	22	17	14	45	1.84
12780684--12781416	170	4.3	167	76	7	525	23	18	13	44	1.85
12781090--12781488	170	2.3	170	85	2	507	22	15	13	48	1.79
12782550--12782595	22	2.0	23	91	4	76	19	4	0	76	0.96
12782554--12782597	12	3.8	12	79	11	56	20	4	0	75	0.98
12782679--12783242	59	9.7	57	73	10	349	49	5	10	34	1.60
12782678--12783242	58	9.7	57	73	13	370	49	5	10	34	1.60
12785946--12785993	22	2.2	22	96	0	87	25	22	22	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120