genome.fa.s146.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  27  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2958301--2959148	311	2.7	312	80	6	841	25	26	27	20	1.99
2959244--2959296	26	2.0	26	88	0	79	30	22	22	24	1.99
2960427--2960505	26	3.0	25	85	7	104	27	20	25	26	1.99
2961879--2962190	159	2.0	158	83	1	392	24	29	26	19	1.98
2962226--2962278	26	2.0	26	89	7	81	26	22	26	24	2.00
2963483--2963795	159	2.0	159	82	2	378	23	29	27	19	1.98
2963831--2963883	26	2.0	26	89	7	81	26	22	26	24	2.00
2964616--2964768	45	3.4	45	80	1	137	18	32	30	19	1.96
2965900--2965924	13	1.9	13	100	0	50	24	16	36	24	1.94
2965917--2966079	45	3.6	45	79	8	161	19	34	28	18	1.95
2967431--2967522	45	2.0	45	81	4	105	18	30	32	18	1.95
2968161--2968213	26	2.0	26	92	0	88	30	20	20	28	1.98
2967839--2968263	173	2.4	173	80	3	460	25	26	27	20	1.99
2968498--2968548	26	2.0	26	88	0	75	29	15	25	29	1.96
2969919--2969943	13	1.9	13	100	0	50	24	16	36	24	1.94
2969986--2970138	45	3.4	44	75	3	144	18	33	29	18	1.95
2970450--2970694	136	1.8	135	82	0	319	27	26	26	19	1.99
2973808--2973859	26	2.0	27	92	3	88	28	19	28	23	1.98
2973648--2974010	197	1.8	197	84	2	496	22	30	27	19	1.98
2981479--2981532	26	2.1	26	89	0	81	24	16	27	31	1.96
2983304--2983356	26	2.0	26	89	7	81	24	16	28	30	1.97
2984301--2984456	45	3.4	45	76	2	134	17	30	30	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2990809--2990861	26	2.0	26	92	0	88	24	20	26	28	1.99
2991182--2991235	26	2.0	26	85	3	72	24	22	25	27	2.00
2992199--2992370	45	3.9	42	73	10	139	18	32	28	20	1.96
2993017--2993069	26	2.0	26	88	0	79	26	18	28	26	1.98
2993730--2993880	45	3.4	45	82	0	185	16	32	31	19	1.94
2994364--2994416	26	2.0	26	92	0	88	24	18	28	28	1.98
2994721--2994773	26	2.0	26	88	0	79	24	16	28	30	1.97
2994057--2994869	354	2.3	353	79	4	896	22	28	28	21	1.99
2994895--2994945	26	2.0	26	92	0	84	29	13	25	31	1.94
2995657--2996061	170	2.4	171	75	5	399	23	27	27	20	1.99
2996762--2996857	45	2.1	45	84	3	122	19	30	29	20	1.97
2996762--2996926	90	1.8	90	80	5	199	19	29	30	21	1.97
2996785--2996902	45	2.6	45	77	7	114	20	27	32	20	1.97
2997743--2997793	26	2.0	26	84	0	66	25	17	27	29	1.98
2998736--2998938	90	2.3	90	82	1	228	18	32	30	19	1.95
2998736--2998940	45	4.6	45	80	1	205	18	32	30	19	1.95
2999760--2999815	26	2.2	26	90	0	85	26	21	25	26	1.99
3001148--3001208	26	2.3	27	91	5	97	29	16	22	31	1.96
3002470--3002627	45	3.5	45	79	5	140	23	31	26	18	1.98
3003436--3003488	26	2.0	26	92	0	88	28	22	24	24	2.00
3004901--3005005	45	2.3	45	85	3	140	18	35	28	18	1.94
3005782--3005834	26	2.0	26	88	0	79	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3006819--3006941	45	2.7	45	82	2	140	20	34	29	16	1.94
3007559--3008004	170	2.6	171	78	7	455	23	30	27	18	1.98
3014610--3014779	45	3.8	45	75	5	130	16	30	31	21	1.95
3015580--3015632	26	2.0	26	88	0	79	24	16	28	30	1.97
3018220--3018417	45	4.4	45	80	3	184	18	32	30	18	1.95
3018248--3018412	90	1.8	90	84	2	224	18	31	32	18	1.95
3018859--3018911	26	2.0	26	92	7	90	30	20	24	24	1.99
3019411--3019463	26	2.0	26	88	0	79	24	18	26	30	1.98
3019043--3019556	196	2.6	197	79	6	589	24	29	26	19	1.99
3020405--3020560	45	3.5	45	79	3	136	16	28	32	23	1.96
3021623--3021863	45	5.4	45	78	2	243	18	32	29	19	1.95
3023622--3023779	45	3.5	45	79	0	172	18	31	31	19	1.96
3024221--3024273	26	2.0	26	88	0	79	30	18	22	28	1.98
3026151--3026203	26	2.0	26	96	0	97	26	18	26	28	1.98
3026506--3026558	26	2.0	26	88	0	79	22	18	28	30	1.98
3027488--3027602	45	2.6	45	85	0	158	19	32	27	20	1.97
3027887--3028173	159	1.8	159	83	6	384	24	26	28	20	1.99
3029743--3029795	26	2.0	26	92	0	88	28	18	24	28	1.98
3029606--3030039	159	2.7	159	78	6	360	24	29	28	18	1.98
3031838--3032040	90	2.3	90	82	0	244	17	31	32	19	1.95
3031838--3032043	45	4.6	45	77	0	205	16	31	32	19	1.94
3032483--3032535	26	2.0	26	88	0	79	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3032838--3032890	26	2.0	26	88	0	79	26	18	26	28	1.98
3037047--3037099	26	2.0	26	96	0	97	28	20	24	26	1.99
3037072--3037366	159	1.9	158	81	2	367	26	29	24	19	1.99
3037402--3037454	26	2.0	26	89	7	81	26	18	26	28	1.98
3038799--3038850	26	2.0	26	88	7	79	23	21	26	28	1.99
3039789--3039901	45	2.5	45	85	2	138	16	31	29	22	1.96
3039968--3040029	30	2.1	30	90	0	97	9	30	29	30	1.89
3040453--3040602	77	1.9	77	89	2	230	11	30	32	26	1.91
3041053--3041103	26	2.0	26	96	0	93	25	15	29	29	1.96
3042047--3042204	45	3.5	45	78	1	147	21	33	26	18	1.96
3044536--3044588	26	2.0	26	92	0	88	30	16	22	30	1.96
3044890--3044942	26	2.0	26	92	0	88	26	20	26	26	1.99
3044733--3045093	195	1.9	195	82	3	467	24	30	24	20	1.98
3045881--3046031	45	3.4	45	84	5	207	15	34	32	17	1.91
3046020--3046153	63	2.1	63	84	0	169	29	39	19	11	1.86
3046506--3046556	26	2.0	26	92	0	84	29	11	27	31	1.92
3047514--3047564	26	2.0	26	92	0	84	27	19	25	27	1.99
3048818--3049017	45	4.5	45	80	2	215	16	32	32	19	1.94
3048818--3049012	89	2.2	90	85	2	259	15	32	32	19	1.93
3049300--3049602	157	1.9	157	83	4	387	24	28	28	19	1.98
3049617--3049669	26	2.0	26	88	0	79	28	16	24	30	1.97
3051919--3051971	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3052908--3052958	26	2.0	26	84	7	68	33	13	23	29	1.93
3053892--3054094	45	4.5	44	72	9	151	20	31	26	21	1.98
3053848--3054050	90	2.3	90	77	10	209	20	31	26	22	1.98
3053892--3054094	90	2.3	90	81	6	216	20	31	26	21	1.98
3054914--3054955	15	2.8	15	89	7	59	19	11	30	38	1.88
3059589--3059613	13	1.9	13	100	0	50	24	16	36	24	1.94
3060289--3060341	26	2.0	26	92	0	88	26	20	24	28	1.99
3060579--3060630	26	2.0	26	88	7	79	26	17	26	28	1.97
3061363--3061415	26	2.0	26	88	0	79	30	18	24	26	1.98
3062025--3062077	26	2.0	26	92	7	90	26	20	26	26	1.99
3062022--3062346	174	1.9	174	82	3	413	24	27	28	20	1.99
3063965--3064017	26	2.0	26	92	0	88	30	20	22	26	1.98
3063681--3064501	333	2.5	334	80	3	821	22	27	28	21	1.99
3064298--3064350	26	2.0	26	88	0	79	30	18	22	28	1.98
3066069--3066093	13	1.9	13	100	0	50	24	16	36	24	1.94
3065103--3066169	548	1.9	548	89	2	1662	27	26	23	22	2.00
3066681--3066733	26	2.0	26	85	0	70	28	18	26	26	1.98
3067037--3067089	26	2.0	26	92	0	88	28	18	24	28	1.98
3068828--3068880	26	2.0	26	92	0	88	24	18	28	28	1.98
3071070--3071122	26	2.0	26	88	0	79	26	18	26	28	1.98
3071402--3071454	26	2.0	26	85	0	70	28	18	22	30	1.98
3070922--3071829	332	2.7	328	79	4	945	23	26	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3071743--3071795	26	2.0	26	88	0	79	24	16	28	30	1.97
3072690--3072936	90	2.7	89	78	4	246	20	31	26	21	1.98
3072734--3072939	45	4.6	45	76	4	150	20	32	26	20	1.97
3073391--3073442	26	2.0	26	92	3	88	26	23	23	26	2.00
3073739--3073798	26	2.4	26	83	5	79	26	16	28	28	1.97
3074744--3074900	45	3.5	45	77	1	154	17	33	28	21	1.96
3074705--3074903	89	2.2	89	76	3	204	18	33	27	21	1.96
3074744--3074918	45	4.0	43	76	7	136	16	33	29	20	1.95
3076528--3076578	23	2.2	23	100	0	102	19	35	31	13	1.91
3076598--3076630	13	2.5	13	100	0	66	24	45	15	15	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120