genome.fa.s146.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  114  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17145712--17145763	22	2.2	24	86	6	72	46	3	3	46	1.39
17150247--17150306	31	1.9	32	86	10	88	25	8	20	46	1.78
17159761--17159839	29	2.7	28	76	5	77	45	0	2	51	1.14
17159761--17159850	29	3.1	29	69	7	74	46	0	2	51	1.13
17159822--17159877	12	4.8	12	77	14	55	46	0	0	53	1.00
17159843--17159886	21	2.0	23	86	8	65	52	0	0	47	1.00
17159810--17159884	35	2.0	39	82	10	95	50	0	0	49	1.00
17159921--17159958	13	2.8	14	84	8	51	28	2	0	68	1.03
17159921--17159970	24	2.0	24	88	11	73	28	2	0	70	0.99
17159934--17159970	12	3.0	13	80	11	51	27	0	0	72	0.84
17160933--17160960	12	2.3	12	100	0	56	32	42	7	17	1.77
17164964--17165008	20	2.2	20	84	0	54	60	6	31	2	1.35
17165793--17165831	18	2.1	19	85	9	53	38	2	7	51	1.44
17173947--17173979	16	1.9	18	88	11	52	15	9	3	72	1.21
17176373--17176411	15	2.6	15	79	0	51	56	7	2	33	1.41
17176562--17176605	17	2.7	16	82	10	54	43	0	0	56	0.99
17181594--17181630	14	2.6	15	83	12	51	70	0	0	29	0.88
17186861--17186921	27	2.4	25	77	5	68	44	8	4	42	1.55
17187925--17187961	11	3.2	11	85	14	56	27	0	0	72	0.84
17187925--17187970	12	3.8	12	88	8	67	26	2	0	71	0.97
17187897--17187970	25	3.1	25	78	14	77	31	1	1	66	1.09
17192935--17192978	14	3.1	14	76	0	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17193508--17193540	18	1.9	17	88	11	50	27	0	0	72	0.85
17203670--17203731	30	2.1	30	96	0	115	50	1	40	8	1.42
17213372--17213465	47	2.0	47	97	0	179	27	11	36	24	1.90
17217852--17217909	25	2.5	23	83	13	66	56	1	1	39	1.19
17233752--17233826	33	2.3	33	100	0	150	24	10	14	50	1.74
17238451--17238511	26	2.5	24	89	5	86	45	4	0	49	1.23
17238492--17238525	15	2.2	15	89	5	50	52	0	0	47	1.00
17238492--17238563	16	4.2	16	73	16	56	52	0	0	47	1.00
17238503--17238582	18	4.6	17	76	15	67	55	0	1	43	1.08
17238610--17238834	8	28.2	8	63	23	66	44	0	0	53	1.12
17238608--17238831	31	7.0	31	68	22	99	44	0	0	54	1.12
17238632--17238665	13	2.6	13	90	0	50	47	2	0	50	1.16
17238660--17238824	11	17.2	10	69	26	85	45	0	1	52	1.13
17238620--17238826	57	3.7	57	81	10	191	45	0	0	52	1.13
17238626--17238846	73	3.0	72	77	16	204	46	0	0	52	1.13
17238662--17238847	21	9.2	20	71	22	99	45	0	1	52	1.11
17238693--17238845	55	2.8	54	82	9	150	45	0	0	52	1.10
17238708--17238859	76	2.0	75	81	10	175	46	1	0	50	1.17
17238911--17238967	13	4.6	13	71	20	59	49	1	0	49	1.11
17238898--17238968	36	2.0	35	91	2	115	49	1	1	47	1.18
17241531--17241555	3	8.3	3	100	0	50	32	32	36	0	1.58
17241877--17241904	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17247039--17247064	2	13.0	2	100	0	52	50	0	50	0	1.00
17249600--17249642	21	2.0	21	95	0	77	18	2	18	60	1.47
17254618--17254736	29	3.9	31	76	14	115	31	6	4	57	1.44
17255440--17255478	19	2.0	20	85	9	55	23	2	20	53	1.57
17264602--17264634	8	4.1	8	88	11	50	21	0	3	75	0.93
17264596--17264634	15	2.6	15	88	8	53	23	0	2	74	0.94
17268804--17268842	11	3.5	11	96	0	69	69	0	0	30	0.89
17270217--17270249	13	2.5	14	85	14	52	57	0	0	42	0.98
17278107--17278143	2	18.5	2	94	0	65	45	0	0	54	1.00
17278718--17278767	25	2.0	25	96	0	91	32	16	18	34	1.92
17278906--17278966	19	3.2	19	88	4	86	16	21	11	50	1.76
17278905--17278967	20	3.2	20	88	4	92	15	20	11	52	1.73
17281882--17281907	5	5.2	5	100	0	52	80	0	0	19	0.71
17283722--17283771	25	2.0	25	92	0	82	26	26	10	38	1.87
17286414--17286441	2	14.0	2	100	0	56	50	0	0	50	1.00
17289278--17289315	20	1.9	20	94	0	67	60	2	10	26	1.43
17289292--17289360	30	2.3	30	82	0	93	53	1	8	36	1.41
17301874--17301945	31	2.4	30	84	9	92	41	4	0	54	1.20
17303860--17303918	17	3.4	17	76	6	57	52	1	1	44	1.21
17303890--17303970	30	2.7	30	75	11	76	43	4	7	44	1.54
17306447--17306472	12	2.2	12	100	0	52	26	34	7	30	1.85
17310062--17310086	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17311314--17311353	12	3.3	12	80	13	55	65	0	0	35	0.93
17312419--17312446	2	14.0	2	100	0	56	50	0	0	50	1.00
17314398--17314430	17	1.9	17	93	0	57	87	12	0	0	0.53
17328021--17328054	6	5.7	6	100	0	68	35	29	35	0	1.58
17329984--17330008	13	1.9	13	100	0	50	40	0	0	60	0.97
17333988--17334032	12	4.0	12	75	16	51	55	2	11	31	1.47
17334859--17334908	24	2.2	23	85	7	66	34	0	4	62	1.14
17336368--17336401	10	3.3	11	88	12	54	64	0	0	35	0.94
17336727--17336776	23	2.2	24	85	7	68	48	0	0	52	1.00
17338609--17338633	2	12.5	2	100	0	50	52	0	0	48	1.00
17347547--17347579	15	2.1	17	88	11	52	48	6	15	30	1.69
17348439--17348476	17	2.2	17	90	0	58	50	0	2	47	1.15
17350922--17351013	22	4.2	22	77	0	94	47	5	10	35	1.62
17350922--17351043	44	2.8	43	80	5	118	46	4	9	38	1.59
17351043--17351096	22	2.5	22	78	6	65	59	9	5	25	1.50
17351146--17351448	22	14.0	22	70	10	88	46	5	11	35	1.64
17351134--17351446	44	7.2	43	68	11	140	46	6	11	35	1.65
17351470--17351527	22	2.6	22	73	10	55	55	5	3	36	1.39
17351480--17351614	22	6.2	22	75	5	78	52	10	2	34	1.51
17351621--17351662	22	1.9	22	85	0	57	45	4	14	35	1.66
17351963--17352023	29	2.1	29	90	0	95	50	4	6	37	1.50
17352488--17352527	21	1.9	21	85	10	55	50	12	12	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17352523--17352574	27	1.9	27	84	7	70	55	7	3	32	1.46
17352548--17352710	79	2.0	81	84	3	213	47	4	4	42	1.44
17353688--17353729	22	1.9	22	85	9	59	69	0	0	30	0.89
17354466--17354517	6	8.7	6	75	8	52	19	1	3	75	1.06
17354732--17354774	12	3.4	12	84	15	52	65	0	0	34	0.93
17355083--17355120	15	2.5	15	91	4	58	52	0	0	47	1.00
17355083--17355177	18	5.5	16	76	15	66	50	0	2	47	1.13
17355089--17355178	19	5.1	18	78	14	80	50	0	2	47	1.13
17355377--17355518	17	8.4	18	65	25	60	45	0	0	52	1.10
17355207--17355611	54	7.4	55	69	22	223	44	0	1	53	1.15
17355472--17355605	67	2.0	68	83	12	170	42	0	2	55	1.12
17355559--17355614	18	3.1	19	85	12	64	39	0	3	57	1.16
17364103--17364147	22	2.0	22	86	0	63	53	2	8	35	1.45
17364278--17364360	22	3.8	22	80	0	76	46	6	8	38	1.59
17364493--17364576	22	3.9	22	77	12	93	48	2	9	39	1.49
17364494--17364577	42	2.0	44	85	4	118	47	3	9	39	1.53
17364729--17364770	22	1.9	22	85	0	57	42	9	7	40	1.65
17364752--17364850	52	1.9	52	81	8	121	45	4	7	43	1.50
17364791--17364846	22	2.5	22	79	0	58	44	3	5	46	1.43
17364899--17364940	22	2.0	22	90	4	68	52	11	0	35	1.38
17365245--17365286	22	1.9	22	90	0	66	57	4	9	28	1.51
17365279--17365337	29	2.0	29	83	0	73	45	8	6	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17365519--17365558	21	1.9	21	94	0	71	40	0	7	52	1.30
17365858--17365897	21	1.9	21	90	10	64	50	10	7	32	1.64
17365857--17365907	10	4.8	10	81	13	50	49	11	5	33	1.64
17365984--17366035	11	5.0	10	77	9	59	50	9	1	38	1.46
17365988--17366035	21	2.3	21	85	0	60	52	10	2	35	1.48
17366009--17366060	27	1.9	27	84	7	70	55	7	3	32	1.46
17367275--17367307	14	2.4	14	90	10	50	48	0	0	51	1.00
17367586--17367650	12	5.4	12	71	14	62	23	40	21	15	1.91
17367575--17367657	24	3.5	24	100	0	166	20	36	26	16	1.94
17368114--17368165	17	2.8	19	77	11	63	19	0	3	76	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120