genome.fa.s146.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  65  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7411594--7411659	34	1.9	34	82	11	82	71	1	9	18	1.20
7411630--7411703	6	12.0	6	71	9	51	71	0	2	25	0.99
7413125--7413163	19	2.0	20	90	5	62	25	0	25	48	1.51
7413551--7413600	12	3.9	13	73	21	52	18	2	4	76	1.04
7413556--7413611	26	2.2	26	81	12	62	17	5	3	73	1.17
7413631--7413661	15	2.1	15	93	0	53	80	0	0	19	0.71
7414497--7414586	46	2.0	46	84	2	119	21	11	6	61	1.52
7417702--7418508	120	6.7	120	70	9	392	21	24	12	41	1.88
7418397--7418697	121	2.5	121	75	4	261	18	23	15	41	1.89
7419371--7419501	3	46.3	3	70	19	77	35	3	3	58	1.32
7419338--7419485	46	3.2	46	75	11	135	35	4	3	56	1.37
7419350--7419481	5	23.8	5	74	12	75	37	5	3	53	1.39
7420313--7420379	12	5.4	12	74	12	55	17	4	2	74	1.11
7420328--7420376	25	2.0	25	92	8	82	18	2	4	75	1.06
7432122--7432165	22	2.0	22	100	0	88	36	9	9	45	1.68
7432309--7432358	24	2.1	24	88	7	75	20	20	8	52	1.71
7445561--7445604	22	2.0	22	95	0	79	31	11	13	43	1.80
7455876--7455908	16	2.0	17	88	5	50	42	0	0	57	0.98
7457502--7457599	51	1.9	51	95	0	178	41	8	6	43	1.59
7458326--7458363	19	2.1	19	85	5	51	26	10	21	42	1.85
7458284--7458863	161	3.6	158	76	7	449	32	9	13	43	1.76
7462534--7462586	26	2.1	26	89	3	81	45	0	3	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7462651--7462696	24	1.9	24	81	0	56	30	10	2	56	1.46
7463138--7463184	24	2.0	24	86	0	67	44	2	2	51	1.25
7464796--7465041	123	2.0	123	92	0	411	39	8	34	17	1.81
7469123--7469160	17	2.2	17	90	0	58	23	0	0	76	0.79
7469223--7469256	17	2.0	17	88	0	50	2	2	14	79	0.97
7470237--7470275	20	2.0	20	85	10	53	51	2	7	38	1.44
7477179--7477226	23	2.1	23	96	0	87	35	25	22	16	1.95
7479062--7479190	59	2.2	59	85	2	170	17	3	21	57	1.54
7479140--7479191	26	2.0	27	85	11	72	15	0	23	61	1.33
7479550--7479622	22	3.6	22	75	21	86	32	0	10	56	1.34
7479538--7479622	38	2.3	38	89	6	129	32	1	9	56	1.39
7485773--7485806	16	2.1	17	88	5	52	11	8	8	70	1.34
7488450--7488505	25	2.3	25	87	3	78	25	1	28	44	1.64
7488478--7488555	11	7.3	11	75	16	65	25	0	24	50	1.50
7488487--7488527	20	2.1	19	86	4	55	21	0	26	51	1.48
7488740--7488774	12	2.9	12	91	0	52	31	22	20	25	1.98
7488907--7488958	26	2.0	26	88	0	77	46	9	13	30	1.75
7499644--7499819	68	2.6	67	83	5	237	39	6	10	43	1.65
7499762--7499870	45	2.4	45	83	4	132	39	7	12	40	1.71
7499694--7499959	112	2.4	111	81	8	306	36	7	13	41	1.74
7499921--7500015	44	2.2	44	84	3	120	33	9	15	41	1.80
7500123--7500438	17	17.6	18	71	16	151	29	12	11	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7500160--7500278	52	2.2	54	78	12	129	31	12	9	47	1.73
7500266--7500403	53	2.6	55	80	9	169	28	12	13	46	1.78
7500123--7500579	36	12.7	36	74	11	312	28	12	11	47	1.76
7500198--7500571	70	5.2	72	75	8	203	29	13	11	46	1.77
7501224--7501283	6	9.0	7	81	9	56	11	5	1	81	0.91
7501234--7501283	19	2.7	17	82	14	55	10	4	2	84	0.84
7501382--7501573	49	4.0	47	72	16	151	25	6	11	56	1.57
7501369--7501505	24	5.7	24	78	17	133	24	5	10	59	1.50
7501437--7501515	24	3.3	23	74	8	68	26	3	10	59	1.47
7502754--7502815	25	2.4	26	71	7	65	25	20	25	27	1.99
7509804--7509861	30	1.9	30	85	0	80	44	12	8	34	1.72
7514840--7515011	87	2.0	87	96	0	317	38	22	13	25	1.91
7519936--7519961	13	2.0	13	100	0	52	38	7	0	53	1.30
7521225--7521446	21	10.8	21	76	9	118	45	4	2	47	1.34
7521261--7521547	10	27.8	10	65	17	88	44	3	3	48	1.36
7521225--7521453	42	5.6	42	73	8	141	46	3	2	47	1.33
7521257--7521414	78	2.0	79	85	1	210	43	3	3	50	1.34
7521237--7521438	99	2.0	99	83	1	253	45	3	2	48	1.32
7521275--7521393	57	2.1	56	84	1	148	43	2	3	50	1.32
7521295--7521414	57	2.1	57	80	6	127	44	3	4	48	1.38
7521581--7521680	21	4.7	21	71	14	78	51	2	4	43	1.32
7521742--7521821	42	1.9	42	84	2	108	40	0	3	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7521742--7521824	11	8.1	10	72	19	64	40	0	3	55	1.17
7521799--7521929	31	4.1	31	71	20	74	42	2	3	51	1.29
7522457--7522522	32	2.1	32	85	0	87	42	13	9	34	1.76
7523510--7523560	21	2.4	22	87	9	70	29	19	13	37	1.90
7523699--7523785	34	2.6	33	83	3	102	19	18	13	48	1.81
7524265--7524375	6	18.2	6	78	14	93	25	4	1	68	1.18
7524424--7524467	13	2.8	17	74	25	60	13	6	9	70	1.33
7524411--7524467	30	1.9	30	89	7	89	14	7	7	71	1.28
7524971--7525014	19	2.3	18	81	11	52	29	13	9	47	1.74
7525253--7525282	16	1.9	16	93	6	53	76	3	0	20	0.92
7527458--7527954	146	3.5	145	77	6	450	42	11	14	32	1.81
7528710--7528922	61	3.6	59	78	12	242	40	11	3	44	1.58
7528934--7528972	17	2.3	17	86	8	53	51	2	0	46	1.14
7529476--7529626	62	2.4	62	83	2	178	31	24	14	29	1.95
7530588--7530761	17	10.3	17	72	6	75	41	10	14	32	1.80
7530588--7530757	68	2.5	70	74	5	170	42	10	14	32	1.80
7530724--7530761	16	2.3	17	90	4	60	36	10	15	36	1.82
7530731--7530789	17	3.6	16	75	8	64	37	6	16	38	1.76
7530903--7530990	42	2.0	43	80	6	97	40	12	11	35	1.79
7537511--7537547	3	12.3	3	88	0	56	35	2	0	62	1.10
7543033--7543093	20	3.1	21	80	15	60	52	0	1	45	1.10
7543046--7543093	17	2.8	17	81	12	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7543042--7543093	20	2.7	19	82	8	61	55	0	0	44	0.99
7544195--7544234	3	13.3	3	100	0	80	67	0	0	32	0.91
7551546--7551589	22	2.0	22	95	0	79	31	11	13	43	1.80
7551737--7551821	23	3.6	23	88	4	125	14	24	18	42	1.88
7555470--7555512	22	2.0	22	90	0	68	37	11	11	39	1.78
7555526--7555556	12	2.6	12	94	0	53	22	29	12	35	1.91
7558562--7558616	23	2.4	23	84	3	67	61	0	3	34	1.13
7558661--7558708	17	2.7	19	75	21	59	39	0	0	60	0.97
7559390--7559497	42	2.6	42	82	5	112	30	24	11	34	1.90
7561608--7561673	29	2.3	29	81	7	80	46	6	1	45	1.37
7565343--7565368	2	13.0	2	100	0	52	50	0	0	50	1.00
7567548--7567587	20	2.0	20	90	0	62	57	2	0	40	1.12
7569897--7569927	14	2.2	14	94	0	53	51	0	3	45	1.17
7573309--7573368	20	3.2	20	75	17	65	55	1	1	41	1.20
7574471--7574501	3	10.3	3	100	0	62	67	0	32	0	0.91
7575322--7575367	20	2.4	19	80	16	51	39	2	0	58	1.10
7575700--7575735	17	2.1	17	89	0	54	38	0	0	61	0.96
7577794--7577826	2	17.0	2	93	6	59	51	0	0	48	1.00
7577797--7577826	15	2.0	15	100	0	60	53	0	0	46	1.00
7579020--7579053	3	11.7	3	87	6	52	0	29	0	70	0.87
7580364--7580393	15	2.0	15	93	0	51	10	3	6	80	1.01
7581979--7582036	14	4.0	14	78	8	71	20	0	29	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7581908--7582032	30	4.2	30	74	9	103	22	0	28	48	1.56
7581979--7582042	30	2.1	30	85	5	85	21	1	26	50	1.58
7585297--7585330	12	2.8	12	95	0	59	14	2	50	32	1.58
7585410--7585453	18	2.4	19	85	11	65	4	0	13	81	0.83
7585878--7586103	74	3.0	74	76	8	226	47	14	21	16	1.82
7585894--7586107	75	2.9	73	78	7	209	47	14	21	16	1.82
7585967--7586111	37	3.9	37	73	6	132	46	15	22	16	1.84
7585894--7586182	149	1.9	149	80	6	336	47	14	19	17	1.82
7586241--7586297	22	2.6	22	76	17	73	33	10	24	31	1.89
7586209--7586297	44	2.0	43	82	8	108	37	10	20	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120