genome.fa.s146.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  55  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6304755--6304807	26	2.0	26	100	0	106	26	26	20	26	1.99
6307339--6307391	26	2.0	26	96	0	97	26	22	22	28	1.99
6308242--6308292	26	2.0	26	88	0	75	25	25	17	31	1.97
6309149--6309201	26	2.0	26	92	0	88	26	22	20	30	1.98
6311787--6311839	26	2.0	26	85	0	70	28	22	16	32	1.96
6311629--6311988	185	1.9	185	85	4	494	21	28	26	23	1.99
6313537--6316116	841	3.0	837	81	8	2577	25	24	23	25	2.00
6315256--6315306	26	2.0	26	100	0	102	23	27	19	29	1.98
6316160--6316212	26	2.0	26	100	0	106	26	26	20	26	1.99
6314389--6316786	902	2.7	901	88	2	3550	25	24	24	25	2.00
6318401--6318453	26	2.0	26	96	0	97	26	24	20	28	1.99
6319301--6319353	26	2.0	26	96	0	97	24	28	20	26	1.99
6320198--6320249	26	2.0	26	85	7	70	26	26	17	28	1.97
6318371--6321890	899	3.9	890	87	3	4632	25	24	23	25	2.00
6318371--6321890	887	3.9	899	86	3	4770	25	24	23	25	2.00
6321803--6329700	877	8.9	876	81	7	8302	25	24	24	25	2.00
6324450--6324502	26	2.0	26	96	0	97	28	26	18	26	1.98
6325375--6325425	26	2.0	26	100	0	102	25	27	19	27	1.99
6323580--6329708	899	6.9	896	81	8	6531	25	24	23	25	2.00
6328055--6328107	26	2.0	26	88	0	79	28	22	20	28	1.99
6328933--6330416	717	2.1	715	87	4	2127	26	24	23	25	2.00
6330529--6330579	26	2.0	25	96	3	93	27	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6331433--6331485	26	2.0	26	100	0	106	26	22	20	30	1.98
6332045--6332097	26	2.0	26	88	0	79	28	24	20	26	1.99
6331104--6332348	612	2.0	614	80	10	1394	21	27	26	23	1.99
6332949--6333000	26	2.0	26	96	0	95	28	26	17	26	1.97
6333849--6333899	26	2.0	25	96	3	93	27	25	19	27	1.99
6335620--6335672	26	2.0	26	92	0	88	26	22	20	30	1.98
6331714--6347217	892	17.4	900	84	4	18990	25	24	23	25	2.00
6339186--6339239	26	2.1	26	92	0	90	22	29	25	22	1.99
6341849--6341904	26	2.2	26	90	0	85	32	21	17	28	1.96
6346305--6346354	26	1.9	26	95	0	91	24	24	22	30	1.99
6347584--6347636	26	2.0	26	100	0	106	26	26	20	26	1.99
6348881--6348933	26	2.0	26	100	0	106	26	26	20	26	1.99
6351912--6351964	26	2.0	26	96	0	97	28	26	18	26	1.98
6354494--6354546	26	2.0	26	96	0	97	26	24	20	28	1.99
6352779--6365045	894	13.8	904	84	4	15074	25	24	24	25	2.00
6356269--6356319	26	2.0	26	92	0	84	31	17	15	35	1.92
6358896--6358948	26	2.0	26	92	0	88	24	24	24	26	2.00
6361573--6361625	26	2.0	26	92	0	88	28	24	20	26	1.99
6362468--6362520	26	2.0	26	92	7	90	28	22	20	28	1.99
6365845--6365897	26	2.0	26	88	0	79	24	28	16	30	1.97
6365448--6368704	891	3.7	890	84	6	4201	25	24	24	24	2.00
6368486--6368538	26	2.0	26	96	0	97	24	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6370121--6370173	26	2.0	26	92	0	88	24	30	16	28	1.97
6371004--6371056	26	2.0	26	92	0	88	26	26	18	28	1.98
6368702--6376963	899	9.2	897	87	3	10541	26	24	23	25	2.00
6374598--6374650	26	2.0	26	100	0	106	26	26	20	26	1.99
6375495--6375550	26	2.2	26	93	0	94	33	23	16	26	1.95
6376408--6376460	26	2.0	26	85	0	70	32	24	18	24	1.97
6378971--6379023	26	2.0	26	96	0	97	28	26	18	26	1.98
6382435--6382487	26	2.0	26	100	0	106	26	26	20	26	1.99
6379508--6382929	835	4.0	843	80	8	3266	25	25	24	25	2.00
6383361--6388322	848	5.6	868	81	8	4888	25	25	24	25	2.00
6385505--6385555	26	2.0	26	88	0	75	29	21	19	29	1.98
6386401--6386450	26	1.9	26	91	0	82	30	28	14	28	1.95
6387296--6387348	26	2.0	26	92	0	88	28	24	18	28	1.98
6383272--6388331	896	5.7	892	82	7	5666	25	24	24	25	2.00
6388435--6388487	26	2.0	26	92	0	88	26	22	20	30	1.98
6389337--6389389	26	2.0	26	88	0	79	28	20	20	30	1.98
6388329--6391005	903	3.0	899	89	2	3936	25	25	24	25	2.00
6390240--6390292	26	2.0	26	88	0	79	24	22	24	28	2.00
6390217--6392128	739	2.6	722	85	6	2589	25	23	23	26	2.00
6394340--6394392	26	2.0	26	96	0	97	26	26	18	28	1.98
6392131--6395429	882	3.7	886	85	4	4247	25	25	24	24	2.00
6395243--6395292	26	1.9	26	95	0	91	26	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6395455--6397706	880	2.6	859	86	4	3068	26	24	23	25	2.00
6398521--6398573	26	2.0	26	100	0	106	26	22	20	30	1.98
6399219--6399268	26	1.9	26	95	0	91	26	26	20	28	1.99
6398326--6399707	695	2.0	695	87	1	2002	23	25	25	25	2.00
6401603--6401653	26	2.0	26	92	0	84	25	27	19	27	1.99
6405102--6405154	26	2.0	26	92	0	88	30	26	16	26	1.97
6401334--6406121	887	5.4	885	82	6	5295	24	25	24	25	2.00
6406002--6406053	26	2.0	26	96	0	95	28	23	17	30	1.97
6406315--6406367	26	2.0	26	96	0	97	26	24	22	26	2.00
6408816--6408868	26	2.0	26	85	0	70	26	24	18	30	1.98
6411993--6413501	719	2.1	698	87	3	2122	26	24	23	25	2.00
6413602--6415764	709	3.0	711	88	4	3138	26	24	23	25	2.00
6417385--6417437	26	2.0	26	96	0	97	26	24	20	28	1.99
6418098--6418148	26	2.0	26	92	0	84	29	27	13	29	1.94
6417191--6418586	724	1.9	711	84	4	1845	22	25	25	26	2.00
6418998--6419050	26	2.0	26	96	0	97	26	26	18	28	1.98
6419892--6419944	26	2.0	26	96	0	97	26	24	20	28	1.99
6417868--6423344	899	6.1	899	86	2	7189	25	25	24	25	2.00
6421695--6421747	26	2.0	26	85	0	70	26	24	18	30	1.98
6422171--6422228	26	2.2	26	81	3	62	60	10	8	20	1.55
6422594--6422645	25	2.0	26	92	3	88	30	25	17	26	1.97
6423318--6423370	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6424213--6424265	26	2.0	26	92	0	88	26	26	20	26	1.99
6424645--6424704	27	2.2	26	82	5	66	63	6	1	28	1.29
6425360--6426557	401	3.0	399	94	1	2012	33	19	18	28	1.95
6427638--6427690	26	2.0	26	85	0	70	26	24	18	30	1.98
6428542--6428594	26	2.0	26	96	0	97	26	26	18	28	1.98
6430387--6430439	26	2.0	26	92	0	88	26	24	18	30	1.98
6431284--6431336	26	2.0	26	96	0	97	24	26	20	28	1.99
6426157--6436551	892	11.5	893	85	4	12770	26	24	23	25	2.00
6432176--6432228	26	2.0	26	96	0	97	28	26	18	26	1.98
6433985--6434037	26	2.0	26	92	0	88	30	26	18	24	1.98
6437418--6438802	712	1.9	717	89	2	2140	26	23	23	26	2.00
6440617--6440669	26	2.0	26	96	0	97	26	24	20	28	1.99
6441177--6441226	26	1.9	26	95	0	91	26	24	20	30	1.98
6441005--6448171	901	8.0	899	83	5	8604	25	24	24	25	2.00
6442977--6443029	26	2.0	26	92	0	88	28	26	18	26	1.98
6443860--6443912	26	2.0	26	92	0	88	28	24	20	26	1.99
6444749--6444802	26	2.1	26	96	0	99	25	25	20	27	1.99
6445626--6445678	26	2.0	26	96	0	97	24	26	20	28	1.99
6446324--6446361	4	9.5	4	88	0	58	2	68	26	2	1.16
6449035--6449087	26	2.0	26	92	7	90	30	26	16	26	1.97
6451487--6451539	26	2.0	26	92	0	88	30	22	20	26	1.98
6453233--6453289	26	2.2	26	90	0	87	29	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6452368--6471590	895	21.5	885	78	8	17619	25	24	24	25	2.00
6462117--6462169	26	2.0	26	88	0	79	32	22	16	28	1.96
6463886--6471590	890	8.5	884	71	12	4207	25	24	23	25	2.00
6466524--6466576	26	2.0	26	88	0	79	30	28	16	24	1.97
6467123--6467340	108	2.0	108	94	0	382	20	38	20	20	1.94
6467523--6467573	26	2.0	26	88	0	75	27	29	13	29	1.94
6469295--6469347	26	2.0	26	100	0	106	26	26	20	26	1.99
6470185--6470237	26	2.0	26	96	0	97	24	26	22	26	2.00
6471085--6471137	26	2.0	26	96	0	97	28	26	18	26	1.98
6471807--6471859	26	2.0	26	96	0	97	26	24	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120