genome.fa.s146.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  119  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18728566--18728596	16	1.9	16	93	0	53	54	3	16	25	1.56
18739178--18739219	17	2.5	17	84	7	59	52	0	0	47	1.00
18739178--18739219	6	7.3	6	78	10	52	52	0	0	47	1.00
18739197--18739221	11	2.3	11	100	0	50	52	0	0	48	1.00
18760134--18760199	25	2.6	26	83	9	82	59	6	1	33	1.31
18764170--18764248	39	2.0	39	90	0	122	20	10	24	45	1.81
18765633--18765675	20	2.2	20	100	0	86	58	9	9	23	1.58
18767279--18767321	18	2.4	18	80	3	52	53	0	11	34	1.37
18768212--18768259	23	2.0	23	84	11	62	31	0	0	68	0.90
18775645--18775672	1	28.0	1	100	0	56	0	100	0	0	0.00
18778475--18778541	35	1.9	35	90	0	107	43	11	14	29	1.82
18779463--18779645	92	1.9	95	90	4	291	56	9	8	25	1.60
18779791--18779821	2	15.5	2	100	0	62	51	0	48	0	1.00
18782365--18782400	2	18.5	2	94	5	65	50	0	50	0	1.00
18785561--18785597	2	18.5	2	100	0	74	51	0	0	48	1.00
18786009--18786039	5	6.2	5	100	0	62	41	0	58	0	0.98
18789678--18789717	19	2.1	19	90	0	62	10	12	0	77	0.99
18791811--18791843	2	16.5	2	100	0	66	48	0	0	51	1.00
18792242--18792278	18	2.1	18	100	0	74	51	10	16	21	1.74
18798099--18798124	2	13.0	2	100	0	52	50	0	0	50	1.00
18803956--18803985	2	15.0	2	100	0	60	50	0	0	50	1.00
18805696--18805724	11	2.6	11	100	0	58	31	6	27	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18806062--18806087	2	13.0	2	100	0	52	50	0	0	50	1.00
18807843--18807873	2	16.0	2	93	6	55	51	0	0	48	1.00
18807843--18807871	15	1.9	15	100	0	58	51	0	0	48	1.00
18809404--18809431	2	14.0	2	100	0	56	50	0	0	50	1.00
18811148--18811180	16	2.1	16	100	0	66	54	18	6	21	1.64
18862395--18862475	42	1.9	42	92	0	135	24	20	18	35	1.95
18865286--18865324	21	1.9	20	85	15	53	51	0	7	41	1.31
18865230--18865294	2	33.5	2	75	6	53	47	7	1	43	1.41
18866546--18866575	15	2.0	15	93	0	51	56	20	10	13	1.65
18866666--18866700	2	17.5	2	93	0	61	48	0	0	51	1.00
18869688--18869727	2	20.0	2	100	0	80	50	0	50	0	1.00
18871443--18871478	17	2.1	17	100	0	72	50	11	11	27	1.72
18876036--18876078	21	2.0	21	82	8	52	65	0	2	32	1.06
18878023--18878269	122	2.0	122	97	0	467	30	12	17	39	1.86
18883174--18883198	11	2.3	11	100	0	50	28	8	40	24	1.83
18888260--18888290	2	15.5	2	100	0	62	48	0	0	51	1.00
18889468--18889499	2	16.0	2	100	0	64	50	0	0	50	1.00
18889681--18889707	4	6.8	4	100	0	54	51	22	0	25	1.48
18890595--18890626	14	2.3	14	100	0	64	37	21	28	12	1.90
18890362--18890883	271	1.9	273	98	1	1003	33	24	15	25	1.95
18890999--18891046	2	24.5	2	93	4	80	0	52	0	47	1.00
18891046--18891079	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18894573--18894647	34	2.2	34	83	4	98	41	1	12	45	1.49
18902423--18902472	19	2.7	19	73	14	50	46	4	2	48	1.32
18902479--18902542	19	3.4	18	75	16	58	34	0	4	60	1.17
18902602--18902661	28	2.1	28	81	6	68	36	13	16	33	1.88
18904116--18904140	2	12.5	2	100	0	50	52	0	0	48	1.00
18904312--18904352	2	20.5	2	100	0	82	48	0	0	51	1.00
18921197--18921300	52	2.0	52	98	0	199	31	9	17	41	1.82
18923987--18924022	2	18.0	2	94	0	63	50	2	0	47	1.15
18933830--18933917	39	2.3	39	86	4	124	14	1	56	27	1.46
18933830--18933913	21	4.3	19	75	14	82	15	1	55	27	1.47
18945911--18945943	3	11.0	3	93	0	57	0	36	0	63	0.95
18953427--18953465	20	1.9	21	85	15	55	28	5	7	58	1.47
18970410--18970439	2	15.0	2	100	0	60	50	0	50	0	1.00
18976453--18976485	2	16.5	2	93	0	57	51	3	0	45	1.16
18982380--18982445	28	2.3	29	77	12	75	33	3	1	62	1.20
18982635--18982666	11	2.8	11	95	4	55	87	0	0	12	0.54
18982637--18982666	6	5.2	6	92	8	53	86	0	0	13	0.57
18997023--18997057	18	1.9	18	88	0	52	11	8	60	20	1.57
18997360--18997564	112	1.8	111	86	7	299	21	7	48	21	1.74
18998725--18998802	38	2.1	37	83	9	97	44	2	16	35	1.62
19002506--19002539	16	2.2	15	94	5	59	41	0	0	58	0.98
19004117--19004151	18	1.9	18	94	0	61	60	8	25	5	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19008331--19008373	3	14.7	3	95	4	79	67	0	0	32	0.91
19008400--19008447	19	2.6	18	76	3	51	79	4	16	0	0.89
19008408--19008444	20	1.9	20	94	5	67	75	5	18	0	0.99
19009526--19009572	18	2.7	17	78	12	51	23	0	4	72	1.02
19009972--19010024	15	3.4	15	92	5	79	52	18	0	28	1.46
19013267--19013309	22	2.0	22	90	0	68	30	20	16	32	1.95
19013172--19013515	110	3.1	110	86	1	465	22	20	17	38	1.93
19013479--19013547	23	3.0	23	85	2	77	27	23	20	28	1.99
19013500--19013552	22	2.4	22	83	3	61	32	20	15	32	1.93
19013390--19013639	133	1.9	133	82	5	317	24	16	17	41	1.89
19013723--19013774	22	2.3	23	80	12	63	28	19	15	36	1.92
19013172--19014189	353	2.9	353	76	6	845	23	19	16	40	1.91
19013840--19013881	21	2.0	21	85	4	57	30	21	14	33	1.93
19013523--19014284	219	3.5	221	79	3	703	23	18	16	41	1.90
19014059--19014101	22	2.0	22	85	0	59	30	16	16	37	1.91
19013523--19014284	110	6.9	110	78	4	597	23	18	16	41	1.90
19014576--19014915	102	3.3	102	85	2	432	23	17	10	48	1.78
19014597--19014770	34	5.1	33	71	7	98	20	16	13	50	1.78
19014576--19014965	102	3.8	105	85	2	420	23	16	11	48	1.78
19014560--19014985	105	4.1	104	81	4	373	23	16	11	48	1.79
19015395--19015450	25	2.3	24	84	3	67	53	0	0	46	1.00
19015400--19015450	24	2.1	25	85	3	68	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19016965--19017016	15	3.3	15	81	5	50	51	15	1	30	1.54
19017020--19017119	30	3.4	31	73	15	86	49	30	0	21	1.50
19017011--19017110	29	3.4	27	76	13	83	48	30	1	21	1.57
19017690--19017735	20	2.2	22	84	7	60	30	0	21	47	1.51
19018942--19018986	20	2.2	20	80	0	54	17	31	2	48	1.59
19019298--19019328	2	15.5	2	100	0	62	48	0	0	51	1.00
19025020--19025046	2	13.5	2	100	0	54	51	0	48	0	1.00
19025059--19025083	7	3.6	7	100	0	50	40	12	32	16	1.84
19026322--19026348	2	13.5	2	100	0	54	48	0	0	51	1.00
19032547--19032577	3	10.3	3	100	0	62	32	0	0	67	0.91
19041110--19041150	22	1.9	21	90	5	64	48	0	7	43	1.30
19041970--19041997	3	9.3	3	100	0	56	67	0	0	32	0.91
19045476--19045517	2	21.5	2	95	4	77	50	0	0	50	1.00
19046405--19046450	2	23.0	2	95	0	83	0	47	0	52	1.00
19055963--19056075	58	1.9	59	87	1	165	30	15	15	38	1.88
19062737--19062845	21	5.2	20	72	11	76	49	0	5	44	1.32
19062906--19062949	14	3.0	15	83	12	56	61	0	0	38	0.96
19062979--19063006	2	14.0	2	100	0	56	50	0	0	50	1.00
19063127--19063153	2	13.5	2	100	0	54	48	0	0	51	1.00
19064399--19064431	16	2.1	16	94	0	57	51	9	0	39	1.34
19067383--19067409	7	3.9	7	100	0	54	14	14	25	44	1.84
19071103--19071144	23	1.9	23	85	9	61	30	2	4	61	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19071139--19071177	19	2.0	21	85	10	55	53	0	0	46	1.00
19073075--19073104	2	15.0	2	100	0	60	50	0	0	50	1.00
19076039--19076099	5	11.4	5	78	13	59	78	0	4	16	0.91
19076039--19076099	27	2.3	27	82	5	79	78	0	4	16	0.91
19076039--19076099	22	2.9	21	80	7	70	78	0	4	16	0.91
19076226--19076457	96	2.4	95	83	7	276	44	3	3	48	1.34
19076226--19076464	94	2.5	96	82	9	285	43	3	3	49	1.35
19080300--19080333	1	34.0	1	100	0	68	100	0	0	0	0.00
19083148--19083178	2	15.5	2	100	0	62	48	0	0	51	1.00
19084769--19084834	31	2.0	31	82	8	78	51	6	0	42	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120