genome.fa.s146.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  89  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11779255--11779337	43	1.9	43	97	0	157	42	14	15	27	1.86
11780953--11780981	2	14.5	2	100	0	58	51	0	0	48	1.00
11780981--11781008	2	14.0	2	100	0	56	50	0	50	0	1.00
11786086--11786133	19	2.3	21	83	16	57	72	2	2	22	1.05
11786862--11786886	13	1.9	13	100	0	50	32	0	8	60	1.26
11789951--11790113	45	3.6	45	81	6	177	39	7	12	40	1.72
11789996--11790072	23	3.3	24	70	17	63	40	6	12	40	1.70
11789951--11790113	46	3.6	46	81	4	170	39	7	12	40	1.72
11790053--11790113	23	2.7	23	79	2	61	37	6	14	40	1.72
11790074--11790118	23	2.0	23	86	0	63	33	8	11	46	1.70
11789945--11790166	91	2.5	91	77	5	227	36	7	13	42	1.72
11790329--11790447	17	6.8	17	72	13	82	36	8	13	42	1.75
11790329--11790413	34	2.4	34	84	7	100	37	5	12	43	1.68
11790352--11790468	18	6.7	18	72	9	80	33	10	13	42	1.78
11790333--11790447	35	3.3	34	79	7	97	35	8	13	41	1.76
11790364--11790466	53	2.0	52	84	5	136	33	11	13	41	1.81
11790528--11790591	33	2.0	33	84	3	85	29	14	9	46	1.75
11790709--11790755	15	3.0	15	79	11	58	14	6	19	59	1.56
11790744--11790796	18	2.9	19	80	8	65	32	11	13	43	1.79
11791074--11791142	6	11.2	6	76	6	57	33	1	7	57	1.35
11792223--11792264	12	3.4	12	80	12	50	11	2	2	83	0.84
11792225--11792270	18	2.5	18	86	10	58	10	4	2	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11792223--11792270	24	2.0	24	88	8	71	12	4	2	81	0.93
11792353--11792397	21	2.1	22	84	8	58	28	2	8	60	1.39
11792409--11792475	20	3.4	20	80	12	84	34	1	10	53	1.44
11792410--11792489	18	4.3	18	72	24	60	33	2	11	52	1.50
11792410--11792489	39	2.2	35	86	8	106	33	2	11	52	1.50
11792478--11792510	14	2.4	14	94	0	57	21	6	15	57	1.59
11792724--11792767	19	2.3	19	100	0	88	56	0	0	43	0.99
11793944--11793999	19	2.9	19	75	15	60	48	3	5	42	1.43
11793961--11794053	34	2.7	34	77	14	102	43	5	10	40	1.62
11793710--11795066	682	2.0	672	87	3	1941	33	8	13	43	1.75
11795616--11795676	18	2.9	22	69	23	58	42	0	1	55	1.09
11796547--11796585	21	1.9	21	84	5	53	15	10	7	66	1.43
11797244--11797288	2	22.5	2	100	0	90	48	0	51	0	1.00
11798631--11798690	11	5.1	11	77	15	50	48	0	3	48	1.18
11798658--11798714	30	1.9	30	89	7	89	45	0	3	50	1.18
11798658--11798729	30	2.4	29	82	8	83	48	0	4	47	1.21
11798905--11798994	38	2.4	37	85	7	110	42	0	3	54	1.17
11798966--11799004	11	3.5	11	78	0	51	46	0	0	53	1.00
11811288--11811329	21	2.0	22	85	4	59	59	9	2	28	1.41
11811525--11811567	14	2.7	15	80	19	52	53	16	9	20	1.70
11811585--11811650	13	5.2	13	75	12	66	56	9	7	27	1.58
11811576--11811659	25	3.3	26	71	17	77	55	10	7	26	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11811550--11811659	38	2.9	39	77	6	113	55	10	7	26	1.60
11811870--11811943	7	9.7	7	72	25	53	79	2	2	14	0.95
11811869--11811913	18	2.6	17	89	3	63	82	0	2	15	0.77
11811869--11811943	23	3.2	24	76	14	68	80	2	2	14	0.94
11814688--11814788	45	2.3	45	81	5	107	64	10	2	21	1.39
11815466--11815563	25	4.0	24	80	11	92	56	12	6	25	1.59
11815495--11815580	13	6.8	13	79	11	74	55	12	8	23	1.63
11815699--11815757	26	2.3	24	78	18	66	67	6	5	20	1.33
11815841--11815886	16	2.9	16	80	3	58	76	2	2	19	1.00
11815838--11815903	15	4.5	15	74	20	59	80	1	1	16	0.87
11815838--11815908	16	4.2	16	72	19	54	80	1	2	15	0.90
11815857--11815924	27	2.4	27	79	11	66	80	1	5	11	0.94
11816192--11816260	31	2.2	31	94	0	129	44	21	13	20	1.85
11817947--11818011	35	1.9	33	84	6	85	46	1	1	50	1.20
11818026--11818078	22	2.3	23	80	3	63	64	0	0	35	0.94
11818744--11818779	17	2.1	17	89	5	54	50	0	2	47	1.15
11818774--11818812	15	2.5	16	84	16	55	43	0	0	56	0.99
11819367--11819428	26	2.4	26	76	7	65	58	0	0	41	0.98
11819505--11819555	19	2.7	19	81	6	50	49	1	5	43	1.38
11819547--11819590	19	2.3	19	84	7	54	56	0	0	43	0.99
11819537--11819618	24	3.4	23	74	15	78	62	1	0	36	1.03
11821907--11821944	18	2.1	18	90	0	58	15	0	21	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11821894--11821967	21	3.5	21	80	14	89	13	0	21	64	1.27
11827445--11827475	15	2.1	15	94	5	55	35	3	12	48	1.58
11828205--11828274	32	2.2	32	89	2	104	30	8	10	51	1.65
11828205--11828306	33	3.1	32	84	2	105	31	10	8	49	1.68
11828472--11828504	11	3.0	11	95	0	57	27	6	0	66	1.15
11833709--11833734	10	2.6	10	100	0	52	53	0	0	46	1.00
11837992--11838040	13	3.8	13	76	20	50	59	0	0	40	0.98
11838001--11838048	25	1.9	25	83	8	62	58	2	0	39	1.10
11838158--11838219	29	2.2	29	80	5	74	29	8	8	54	1.58
11838170--11838252	29	2.9	29	83	0	85	31	6	7	55	1.51
11838328--11838380	18	2.9	18	78	10	63	43	0	0	56	0.99
11838399--11838423	7	3.6	7	100	0	50	56	0	0	44	0.99
11840278--11840322	22	2.0	24	83	16	60	46	0	0	53	1.00
11846948--11846984	18	2.1	18	90	10	58	27	5	0	67	1.12
11847010--11847075	21	3.1	22	84	4	75	34	1	1	62	1.14
11850802--11850869	35	1.9	36	87	3	102	51	4	8	35	1.53
11850851--11850891	17	2.4	17	77	22	50	70	4	7	17	1.28
11851358--11851391	18	1.9	17	94	5	59	41	0	0	58	0.98
11851358--11851394	16	2.2	18	85	9	51	40	0	0	59	0.97
11851715--11851774	27	2.3	26	85	2	75	35	10	0	55	1.34
11862496--11862825	163	2.0	165	89	4	506	48	7	20	22	1.75
11869943--11870145	22	9.2	22	66	14	80	30	13	22	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11870106--11870189	44	1.9	44	82	4	107	34	14	19	32	1.91
11870099--11870208	22	5.0	22	76	8	80	32	15	20	31	1.93
11870679--11870711	17	2.0	17	88	5	50	30	12	3	54	1.52
11874544--11874607	29	2.2	29	91	2	103	46	7	12	32	1.70
11875561--11875590	15	2.1	15	93	6	53	43	6	3	46	1.46
11876438--11876499	26	2.6	23	82	14	65	64	9	0	25	1.24
11884455--11884511	30	1.9	29	85	3	78	57	0	1	40	1.09
11884986--11885026	20	2.0	20	100	0	82	34	9	4	51	1.56
11885885--11885918	8	4.1	8	88	3	50	29	0	0	70	0.87
11886049--11886097	15	3.2	15	88	2	53	30	2	2	65	1.15
11886056--11886097	15	2.7	15	88	3	57	30	2	2	64	1.19
11886108--11886160	25	2.2	24	89	3	79	18	0	15	66	1.26
11886116--11886170	25	2.2	25	83	0	65	21	0	12	65	1.26
11886157--11886182	12	2.2	12	100	0	52	30	0	0	69	0.89
11886198--11886236	21	1.9	21	89	5	62	41	2	2	53	1.28
11886243--11886267	9	2.8	9	100	0	50	32	0	8	60	1.26
11887743--11887782	19	2.2	18	86	4	53	20	0	5	75	0.99
11888011--11888048	19	2.0	20	89	5	60	42	5	2	50	1.39
11888111--11888167	29	2.0	29	89	0	87	70	10	0	19	1.16
11897839--11897868	16	1.9	15	93	6	51	73	0	3	23	0.98
11898733--11898772	16	2.4	17	87	4	55	42	7	12	37	1.71
11899250--11899289	14	2.7	16	77	18	50	40	5	5	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11900139--11900194	20	2.8	19	84	10	76	50	1	0	48	1.11
11900610--11900642	14	2.3	15	89	5	50	24	0	9	66	1.20
11901103--11901136	15	2.2	16	89	5	52	35	2	0	61	1.11
11901992--11902028	11	3.0	13	80	15	51	51	0	0	48	1.00
11908683--11908769	20	4.5	20	73	16	67	33	5	0	60	1.20
11908695--11908727	16	2.0	17	94	5	59	24	3	0	72	0.98
11908893--11908965	15	4.8	15	72	9	58	21	2	1	73	1.03
11909031--11909089	31	1.9	31	89	0	91	32	16	28	22	1.96
11909165--11909211	22	2.1	22	96	0	85	21	23	25	29	1.99
11909201--11909350	32	4.9	31	74	12	87	32	14	17	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120