genome.fa.s146.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  64  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7281334--7283243	816	2.4	812	87	4	2667	39	11	9	39	1.74
7283629--7283654	2	13.0	2	100	0	52	50	0	0	50	1.00
7284299--7284379	18	4.6	18	69	17	62	35	4	2	56	1.34
7284273--7284382	52	2.1	52	93	1	195	38	4	1	55	1.31
7292511--7292536	2	13.0	2	100	0	52	50	50	0	0	1.00
7292479--7293200	363	2.0	364	89	3	1098	41	19	12	27	1.87
7295765--7295816	2	26.0	2	100	0	104	0	50	0	50	1.00
7296764--7296792	12	2.3	13	94	5	51	75	0	0	24	0.80
7297798--7297844	19	2.5	19	78	0	58	36	2	10	51	1.49
7299299--7299337	16	2.4	16	87	8	53	38	2	10	48	1.51
7303070--7303118	24	2.1	23	84	3	62	24	6	0	69	1.11
7303971--7304009	18	2.1	18	85	9	51	25	15	10	48	1.76
7308254--7308338	41	2.1	41	86	4	118	44	14	11	29	1.80
7308452--7308490	18	2.1	19	85	4	53	38	7	15	38	1.76
7308463--7308501	19	2.1	19	85	0	51	35	12	15	35	1.86
7308914--7309103	21	8.9	21	83	5	220	40	11	9	38	1.73
7308914--7309104	22	8.9	20	81	7	139	40	10	9	38	1.73
7308914--7309106	43	4.5	43	86	3	255	40	11	9	38	1.73
7310192--7310259	33	1.9	33	85	11	91	10	20	0	69	1.18
7310217--7310263	8	5.8	8	76	14	51	8	17	0	74	1.05
7310225--7310261	17	2.1	18	90	5	58	8	18	0	72	1.08
7310653--7310705	16	3.3	15	76	10	52	0	13	7	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7314292--7314351	30	2.0	30	100	0	120	40	13	10	36	1.78
7314298--7314359	30	2.2	28	86	11	83	40	14	11	33	1.82
7314614--7314638	13	1.9	13	100	0	50	4	0	8	88	0.64
7318856--7318897	22	1.9	22	85	9	59	35	4	4	54	1.42
7320740--7320790	23	2.2	24	86	6	70	72	5	3	17	1.20
7322432--7322489	12	4.9	12	81	12	66	27	1	0	70	0.97
7322432--7322496	18	3.5	19	79	12	73	27	1	0	70	0.96
7322432--7322474	6	7.0	6	89	5	68	30	0	0	69	0.88
7322492--7322627	3	45.3	3	70	20	63	32	3	0	63	1.11
7322534--7322629	28	3.7	26	84	12	117	30	5	0	64	1.15
7322491--7322579	35	2.5	37	76	20	91	33	4	0	61	1.16
7323055--7323097	11	4.1	10	82	11	50	65	0	34	0	0.93
7323055--7323099	20	2.1	21	88	12	65	64	0	35	0	0.94
7323478--7323811	58	5.7	58	89	4	514	41	5	14	39	1.68
7329357--7329407	26	2.0	26	84	0	66	45	5	3	45	1.46
7329508--7329542	12	2.9	12	86	0	52	34	0	2	62	1.10
7330600--7330630	2	15.5	2	100	0	62	51	0	0	48	1.00
7333187--7333214	6	4.7	6	100	0	56	50	50	0	0	1.00
7338420--7338480	28	2.2	28	85	5	79	54	16	4	24	1.62
7338437--7338490	28	2.0	27	85	10	74	59	16	5	18	1.56
7342208--7342723	203	2.6	200	83	2	613	44	10	10	34	1.73
7346485--7347538	232	4.6	222	75	11	578	45	11	9	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7347241--7347281	18	2.2	18	86	8	55	53	7	7	31	1.56
7346636--7347570	232	4.0	235	81	4	996	45	12	9	32	1.74
7348094--7348232	71	2.0	71	98	0	269	43	3	18	34	1.68
7348222--7348269	15	3.1	16	79	11	64	37	12	8	41	1.73
7348332--7348451	35	3.5	35	75	6	136	65	0	9	25	1.22
7348357--7348462	35	3.1	34	71	13	108	60	0	9	30	1.28
7348325--7348462	69	2.0	69	95	0	249	63	0	9	27	1.25
7358469--7358557	29	3.1	29	95	0	160	47	12	22	17	1.81
7367082--7367110	14	2.1	14	100	0	58	65	0	6	27	1.18
7369581--7369609	7	4.1	7	100	0	58	13	0	27	58	1.36
7372605--7372665	16	3.8	16	81	10	70	73	0	14	11	1.09
7372603--7372659	9	6.6	9	78	8	55	73	0	14	12	1.09
7373771--7373831	24	2.5	24	92	5	97	42	4	14	37	1.68
7373835--7373906	21	3.5	20	83	7	90	33	4	19	43	1.70
7373904--7373976	36	2.0	36	89	5	112	39	5	16	38	1.72
7373936--7374230	108	2.7	109	89	2	441	38	9	14	37	1.79
7374097--7374159	22	2.9	22	71	17	58	34	9	15	39	1.80
7374528--7374600	17	4.2	17	78	3	83	41	8	12	38	1.73
7374562--7374599	18	2.1	19	90	5	60	44	10	10	34	1.73
7374528--7374685	69	2.2	71	82	4	167	39	11	13	36	1.80
7374595--7374646	17	3.1	17	80	0	68	38	15	15	30	1.88
7374581--7374646	34	2.0	33	87	3	96	39	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7374617--7374697	39	2.1	39	92	0	135	39	12	12	35	1.81
7374685--7374725	18	2.3	18	86	0	55	51	4	7	36	1.51
7374698--7374746	17	2.9	17	81	6	55	42	8	10	38	1.68
7375040--7375201	43	3.7	44	80	9	179	25	12	14	46	1.81
7375040--7375265	44	5.1	44	80	5	208	25	12	14	47	1.79
7374926--7375265	87	3.9	88	75	7	287	25	11	15	47	1.80
7374927--7375265	44	7.7	45	75	5	196	24	11	15	47	1.79
7375602--7375661	24	2.6	23	75	15	61	16	6	6	70	1.31
7376670--7376717	23	2.1	22	84	7	60	16	2	6	75	1.11
7378403--7378512	54	2.1	54	81	6	138	45	11	2	40	1.55
7378552--7378648	49	2.0	49	88	8	144	36	12	10	41	1.77
7381436--7381472	18	2.1	18	94	0	65	29	2	0	67	1.04
7388255--7388297	14	3.1	14	89	0	68	16	16	27	39	1.90
7389451--7389482	10	3.3	10	95	4	57	9	6	0	84	0.78
7391301--7391517	8	27.4	8	64	13	56	22	1	28	48	1.59
7391467--7391517	15	3.2	16	78	13	61	21	0	27	50	1.48
7391357--7391517	32	5.0	32	70	17	84	21	0	29	48	1.55
7391442--7391503	24	2.6	24	84	7	90	22	0	27	50	1.50
7391907--7391953	15	3.3	14	78	21	53	23	2	4	70	1.16
7391894--7391948	23	2.5	22	80	16	60	23	5	3	67	1.28
7392822--7392851	13	2.3	13	94	0	51	3	0	6	90	0.56
7392795--7392878	43	2.0	44	80	4	100	9	13	13	64	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7393547--7393588	21	2.0	21	81	9	50	35	30	0	33	1.58
7396761--7396786	13	2.0	13	100	0	52	7	0	15	76	0.99
7398504--7398536	16	2.0	17	94	5	59	27	0	12	60	1.32
7403378--7403635	59	4.4	57	84	4	291	37	13	6	43	1.69
7403376--7403635	116	2.2	117	83	9	316	37	13	6	43	1.70
7403672--7403739	5	13.4	5	77	22	63	79	0	4	16	0.89
7403682--7403736	21	2.6	21	80	16	60	80	0	5	14	0.89
7403668--7403739	16	4.8	15	80	14	78	79	0	5	15	0.91
7404131--7404186	24	2.3	25	85	11	73	67	1	7	23	1.24
7404170--7404212	22	1.9	23	85	4	61	69	2	4	23	1.18
7404169--7404218	22	2.2	23	78	3	57	72	2	4	22	1.12
7404175--7404255	34	2.4	34	79	10	85	70	1	2	25	1.07
7404449--7404486	5	6.8	6	88	11	55	0	0	13	86	0.56
7404446--7404487	17	2.5	16	92	7	66	0	0	11	88	0.53
7404446--7404489	21	2.1	21	91	8	72	0	0	11	88	0.51
7404512--7405017	42	12.1	41	79	8	382	37	20	15	26	1.93
7404509--7404869	125	2.8	125	84	7	426	37	20	16	25	1.93
7404557--7405017	83	5.6	83	82	9	417	36	20	15	26	1.93
7405510--7405568	22	2.7	21	81	5	64	33	18	8	38	1.81
7406821--7406862	5	8.8	5	84	10	61	16	2	0	80	0.81
7406821--7406862	9	4.4	10	91	8	61	16	2	0	80	0.81
7406820--7406872	8	6.5	8	78	8	54	15	3	0	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7410871--7410934	33	1.9	33	100	0	128	42	18	3	35	1.66
7410811--7410993	93	2.0	92	88	3	269	38	16	6	39	1.73
7410904--7411060	57	2.7	58	91	4	244	36	14	5	44	1.67
7411077--7411173	5	18.4	5	77	17	83	76	0	6	17	0.99
7411077--7411173	17	5.4	17	77	12	97	76	0	6	17	0.99
7411077--7411170	6	15.5	6	72	17	70	76	0	6	17	0.98
7411077--7411173	22	4.6	21	78	16	94	76	0	6	17	0.99
7411593--7411643	17	2.9	17	88	8	68	70	1	9	17	1.24
7411568--7411616	25	2.0	25	84	8	64	67	4	8	20	1.34
7411578--7411643	21	3.3	19	76	16	53	72	1	7	18	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120