genome.fa.s146.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  73  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8877160--8877204	3	15.0	3	100	0	90	66	0	0	33	0.92
8892674--8892699	4	6.5	4	100	0	52	76	0	0	23	0.78
8893642--8893850	49	4.3	49	79	7	212	34	13	15	36	1.86
8893715--8893850	44	3.0	45	83	5	175	33	16	16	33	1.92
8894732--8894758	12	2.2	12	100	0	54	85	0	14	0	0.61
8903934--8903966	15	2.1	16	88	5	50	27	3	12	57	1.49
8906266--8906353	39	2.3	39	100	0	176	37	6	15	39	1.75
8907618--8907966	143	2.4	143	77	6	323	31	11	12	44	1.77
8914572--8914604	16	1.9	17	88	11	50	12	12	3	72	1.23
8916999--8917033	17	2.1	17	100	0	70	34	5	22	37	1.78
8916994--8917031	17	2.1	18	90	9	60	36	5	21	36	1.76
8920127--8920321	103	1.9	103	86	6	279	34	8	11	45	1.71
8920470--8920503	14	2.4	14	95	0	59	58	14	2	23	1.50
8920478--8920524	14	3.1	15	84	9	51	51	14	6	27	1.67
8921531--8921589	28	2.1	28	84	6	75	33	8	15	42	1.77
8922554--8922604	17	3.1	17	83	5	52	54	1	0	43	1.11
8924923--8924997	36	2.0	38	82	5	91	44	0	6	49	1.28
8925026--8925073	20	2.5	20	83	13	64	33	0	2	64	1.05
8925024--8925079	26	2.2	25	83	3	67	37	1	1	58	1.19
8929982--8930031	18	2.7	18	78	3	55	76	0	8	16	1.02
8931781--8931882	38	2.7	38	80	1	116	36	20	13	29	1.91
8931961--8932074	21	5.3	22	79	8	94	28	12	21	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8932706--8932745	16	2.5	16	84	8	55	35	22	0	42	1.54
8933873--8933940	10	6.9	10	78	9	61	1	23	0	75	0.89
8933896--8933937	16	2.8	15	82	7	50	2	21	0	76	0.90
8937878--8937949	20	3.7	20	76	14	69	58	6	4	30	1.43
8942124--8942276	76	2.0	76	98	0	297	31	29	9	30	1.88
8951894--8951941	9	5.3	9	78	9	53	4	8	0	87	0.66
8951888--8951927	19	2.1	19	90	0	62	10	2	0	87	0.63
8951888--8951927	10	4.1	10	83	6	55	10	2	0	87	0.63
8952849--8952895	21	2.1	23	84	7	62	27	0	4	68	1.08
8954117--8954151	18	1.9	18	88	11	54	85	5	0	8	0.73
8965141--8965784	46	13.5	46	81	7	644	29	11	21	37	1.88
8965133--8965801	96	7.0	95	80	7	665	30	11	20	37	1.88
8965141--8965763	290	2.2	286	85	6	855	30	11	21	37	1.88
8966015--8966076	19	3.3	19	82	8	74	4	14	0	80	0.87
8966045--8966088	7	6.7	7	76	23	51	0	25	0	75	0.81
8966031--8966085	29	1.9	28	88	3	83	1	20	0	78	0.85
8966029--8966088	32	1.9	31	83	16	79	1	20	0	78	0.84
8966993--8967040	21	2.2	23	85	7	64	29	0	4	66	1.10
8981703--8981736	16	2.2	16	89	5	52	35	2	5	55	1.39
8983439--8983482	19	2.5	17	79	13	52	54	2	18	25	1.55
8983472--8983509	19	2.0	19	90	10	60	63	0	10	26	1.27
8984230--8984313	29	2.9	29	83	1	96	57	5	5	30	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8986524--8986576	23	2.2	26	83	10	67	54	7	0	37	1.29
8986666--8986711	24	1.9	24	100	0	92	78	6	4	10	1.08
8998664--8998738	28	2.8	26	74	20	82	45	6	4	44	1.48
8999709--8999765	26	2.2	26	84	12	73	36	3	3	56	1.34
8999951--8999989	18	2.2	18	86	9	53	46	5	2	46	1.38
9000784--9000814	13	2.4	13	100	0	62	22	48	16	12	1.80
9001972--9002002	1	31.0	1	93	0	53	96	3	0	0	0.21
9003452--9003485	15	2.3	15	85	5	52	20	14	0	64	1.28
9004375--9004427	22	2.3	25	75	18	60	37	5	3	52	1.43
9004378--9004424	22	2.1	23	84	7	62	38	6	4	51	1.47
9004740--9004784	20	2.2	20	84	7	56	80	0	11	8	0.92
9006568--9006626	23	2.6	23	94	0	100	13	3	16	66	1.39
9006568--9006626	12	5.1	12	77	8	68	13	3	16	66	1.39
9006591--9006732	76	1.9	76	85	2	196	18	5	19	56	1.61
9007373--9007468	47	2.1	47	98	2	185	29	10	6	54	1.59
9012959--9013010	17	3.1	16	81	10	59	46	1	3	48	1.31
9013207--9013272	34	1.9	34	100	0	132	43	7	3	45	1.47
9018366--9018811	152	2.8	157	91	3	713	39	17	13	28	1.88
9018841--9018881	1	41.0	1	95	0	73	97	0	2	0	0.17
9019302--9019360	31	1.9	31	96	0	109	23	23	28	23	1.99
9019699--9019732	11	2.9	12	86	8	52	79	0	0	20	0.73
9019935--9019995	25	2.4	26	81	8	72	78	3	3	14	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9020032--9020090	20	3.0	20	92	5	93	20	28	32	18	1.96
9024757--9024790	17	2.1	16	88	5	50	61	8	5	23	1.47
9027844--9027875	3	10.7	3	93	0	55	28	0	0	71	0.86
9047161--9047194	17	1.9	18	88	5	52	35	0	0	64	0.94
9048418--9048465	23	2.1	23	84	3	62	62	0	6	31	1.20
9049350--9049459	55	2.0	55	92	0	184	37	22	9	30	1.85
9049726--9049758	12	2.7	13	86	13	52	72	0	3	24	0.98
9050834--9050868	18	1.9	18	88	0	52	28	2	0	68	1.04
9051667--9051758	28	3.1	29	70	17	82	44	1	3	51	1.25
9053626--9053654	14	2.0	15	93	6	51	48	0	0	51	1.00
9064075--9064172	30	3.3	31	82	5	130	50	7	6	36	1.55
9064831--9064891	20	2.9	22	77	15	67	50	18	3	27	1.62
9066106--9066139	17	2.0	17	94	0	59	50	0	0	50	1.00
9067486--9068351	43	20.1	43	79	2	774	42	17	13	27	1.85
9067486--9068351	172	5.0	171	80	4	872	42	17	13	27	1.85
9070194--9070262	21	3.1	21	79	18	77	11	11	0	76	1.01
9070225--9070262	10	3.7	10	93	6	67	10	10	0	78	0.95
9072465--9072506	19	2.2	19	95	0	75	14	21	4	59	1.53
9072697--9072771	37	2.0	37	86	0	105	37	14	29	18	1.91
9075571--9075610	21	1.9	21	85	10	55	67	5	25	2	1.23
9078157--9078225	30	2.3	30	82	7	77	34	13	5	46	1.67
9078950--9079011	28	2.4	25	76	21	65	46	1	3	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9079268--9079306	20	2.0	20	89	0	60	51	0	7	41	1.31
9082065--9082093	4	7.2	4	100	0	58	51	0	0	48	1.00
9082717--9082762	24	1.9	24	86	8	67	50	13	17	19	1.78
9104017--9104058	16	2.6	16	88	0	57	35	9	14	40	1.78
9104039--9104381	44	7.8	43	76	2	274	36	7	13	41	1.73
9104063--9104324	88	3.0	89	83	4	316	36	6	15	41	1.74
9104104--9104367	131	2.0	133	87	1	379	38	7	12	40	1.72
9104073--9104328	22	11.7	22	66	12	89	36	7	14	41	1.74
9104635--9104665	16	1.9	16	93	0	53	38	12	12	35	1.82
9104838--9105021	18	10.5	18	72	13	125	27	17	17	36	1.93
9104838--9104989	54	2.9	51	82	6	144	27	17	17	37	1.92
9104891--9105020	53	2.5	51	82	7	147	27	18	20	33	1.96
9104891--9105024	16	7.8	17	72	11	94	26	17	20	34	1.96
9116646--9116689	12	3.4	12	84	9	52	0	9	2	88	0.59
9119935--9119975	3	13.7	3	100	0	82	31	0	0	68	0.90
9122561--9122614	22	2.5	22	81	0	72	35	16	27	20	1.94
9122694--9122757	22	3.0	20	76	17	56	35	17	17	29	1.92
9122819--9122974	22	7.0	22	72	4	80	25	17	26	30	1.97
9124897--9124925	13	2.2	13	100	0	58	0	17	6	75	1.01
9128188--9129116	464	2.0	464	94	0	1642	31	20	16	31	1.95
9131091--9131398	146	2.1	145	86	3	422	32	16	12	38	1.86
9131830--9131867	19	2.0	20	94	5	69	78	0	21	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9134462--9134509	25	2.0	25	83	4	62	35	4	10	50	1.56
9145238--9145292	9	5.9	9	78	14	58	76	7	0	16	1.00
9145241--9145291	20	2.6	19	90	3	75	76	7	0	15	1.00
9145247--9145299	20	2.6	20	87	3	70	75	7	0	16	1.02
9145262--9145320	16	3.6	16	78	17	50	77	5	5	11	1.08
9145268--9145459	101	1.9	100	86	8	275	69	9	9	10	1.38
9146800--9146890	38	2.5	36	77	7	92	16	10	16	56	1.68
9146793--9146917	36	3.4	36	78	6	117	16	10	13	59	1.61
9147219--9147265	14	3.2	14	82	14	51	78	17	0	4	0.90
9147234--9147271	20	1.9	20	100	0	76	81	15	0	2	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120