genome.fa.s146.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  92  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12230250--12230338	30	3.0	30	85	6	110	30	2	2	65	1.17
12230264--12230353	33	2.8	31	80	13	103	28	1	4	65	1.19
12236301--12236326	7	3.7	7	100	0	52	30	0	30	38	1.58
12236543--12236600	23	2.5	24	75	11	57	48	10	5	36	1.60
12237217--12237356	62	2.3	62	79	14	155	48	0	1	49	1.15
12237338--12237362	8	3.1	8	100	0	50	40	0	0	60	0.97
12239550--12239628	32	2.5	31	86	6	106	49	10	8	31	1.67
12242100--12242134	6	5.8	6	96	0	52	51	8	0	40	1.33
12254932--12254969	3	12.7	3	100	0	76	31	0	0	68	0.90
12256100--12256134	3	11.7	3	100	0	70	31	0	0	68	0.90
12258674--12258708	18	1.9	18	88	0	52	40	8	22	28	1.84
12265400--12265463	22	2.9	22	80	13	69	56	0	0	43	0.99
12265428--12265461	18	1.9	18	88	5	52	61	0	0	38	0.96
12267430--12267473	21	2.1	21	83	8	54	38	15	0	45	1.47
12267853--12267880	14	2.0	14	100	0	56	92	7	0	0	0.37
12284088--12284112	2	12.5	2	100	0	50	52	0	48	0	1.00
12284345--12284386	2	21.0	2	100	0	84	50	0	0	50	1.00
12284544--12284616	10	7.0	10	72	9	56	39	5	6	47	1.53
12284519--12284572	27	2.0	27	88	0	81	31	1	9	57	1.41
12284544--12284617	21	3.5	21	81	0	94	39	6	6	47	1.57
12284927--12285077	22	6.9	22	74	3	79	35	5	7	51	1.52
12285075--12285166	22	4.2	22	77	9	73	38	6	7	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12285095--12285199	43	2.4	44	79	4	115	38	6	6	48	1.56
12285190--12285232	22	2.0	22	85	0	59	37	9	6	46	1.63
12285376--12285653	22	12.6	22	68	16	110	37	7	6	49	1.56
12285376--12285684	22	14.0	22	68	13	89	36	7	6	49	1.58
12285601--12285651	11	4.6	11	85	0	57	39	5	1	52	1.37
12285618--12285655	11	3.5	11	89	3	51	36	2	2	57	1.26
12285623--12285663	14	2.8	15	82	10	50	41	0	2	56	1.13
12285968--12286041	22	3.4	22	83	3	87	37	5	8	48	1.56
12286182--12286373	22	8.9	22	70	8	90	39	10	2	47	1.51
12286231--12286267	19	1.9	19	88	0	56	40	16	2	40	1.62
12286426--12286528	22	4.7	22	74	9	77	37	9	4	47	1.58
12286434--12286552	22	5.5	21	74	12	73	35	8	5	51	1.54
12286550--12286640	22	4.1	23	71	5	55	34	8	8	48	1.65
12286578--12286643	22	3.0	22	77	0	78	31	10	7	50	1.65
12286580--12286673	44	2.1	44	84	3	118	32	9	7	50	1.63
12286774--12286857	22	3.8	22	76	3	62	40	10	1	47	1.46
12286858--12286916	20	2.8	21	78	14	68	33	3	10	52	1.52
12286947--12286977	2	15.5	2	93	0	53	45	0	3	51	1.17
12290813--12290862	25	2.0	25	88	3	75	68	4	6	22	1.29
12291159--12291209	25	2.0	25	92	0	84	64	5	3	25	1.33
12291301--12291342	2	21.0	2	85	0	57	45	2	4	47	1.36
12291301--12291342	14	3.0	14	92	0	66	45	2	4	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12294596--12294783	93	2.0	93	100	0	376	28	17	28	25	1.97
12297191--12297273	41	2.0	41	95	0	148	40	22	6	30	1.78
12301055--12301087	17	2.0	17	94	5	59	30	3	0	66	1.06
12302418--12302452	2	17.5	2	100	0	70	0	48	0	51	1.00
12304303--12304350	23	2.2	22	88	7	71	52	0	0	47	1.00
12304969--12305010	17	2.3	19	84	15	54	45	0	0	54	0.99
12309872--12309915	15	2.9	15	80	12	54	52	0	2	45	1.13
12311798--12311840	18	2.3	20	80	15	56	44	2	6	46	1.43
12312271--12312396	32	3.9	33	74	10	116	40	2	6	50	1.41
12312855--12312913	25	2.5	23	81	10	66	44	1	1	52	1.21
12313080--12313139	25	2.4	26	76	15	65	43	1	5	50	1.34
12313095--12313176	33	2.5	32	82	4	92	43	0	4	51	1.23
12313178--12313227	18	2.8	18	79	11	57	48	2	0	50	1.12
12313180--12313231	19	2.8	19	75	18	56	50	1	0	48	1.12
12316093--12316131	10	3.9	10	82	0	51	25	2	7	64	1.33
12316117--12316173	15	3.8	15	75	15	55	28	0	8	63	1.24
12316135--12316175	14	2.8	15	82	13	50	29	0	2	68	1.03
12319636--12319706	27	2.6	27	77	8	72	46	1	4	47	1.30
12319336--12319866	268	2.0	271	88	4	797	44	3	5	46	1.43
12331051--12331097	16	2.8	18	81	18	57	40	2	6	51	1.39
12331205--12331234	6	5.0	6	100	0	60	16	0	0	83	0.65
12331205--12331238	18	2.0	17	88	11	52	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12331210--12331344	24	5.6	23	70	21	73	29	2	0	68	1.02
12331226--12331454	53	4.3	53	80	14	242	31	4	0	63	1.15
12331236--12331312	17	4.6	16	71	18	50	33	3	0	62	1.14
12331221--12331454	83	2.9	82	76	15	229	31	4	0	63	1.15
12331305--12331406	31	3.2	32	75	13	59	31	4	0	63	1.15
12331389--12331446	22	2.6	22	91	2	89	32	5	0	62	1.18
12332631--12332707	24	3.3	24	75	13	81	75	0	15	9	1.04
12332631--12332693	20	3.0	20	81	13	74	77	0	14	7	0.97
12332652--12332693	10	4.3	10	93	3	68	80	0	11	7	0.88
12333704--12333845	42	3.4	41	78	12	164	24	14	21	39	1.90
12333705--12333860	83	1.9	84	86	4	226	25	14	21	39	1.91
12334073--12334239	4	42.8	4	66	12	71	29	3	0	66	1.09
12334104--12334178	31	2.5	31	82	6	91	30	1	0	68	0.98
12335192--12335281	27	3.2	27	63	22	67	41	5	14	38	1.69
12335171--12335336	58	2.8	58	91	2	262	40	5	14	39	1.69
12335978--12336037	19	3.1	19	81	13	86	50	0	8	41	1.33
12336153--12336210	30	2.1	29	84	12	77	50	0	1	48	1.11
12340069--12340218	74	2.0	74	94	0	264	39	18	20	22	1.93
12346886--12346951	19	3.3	18	72	24	51	48	3	4	43	1.38
12348711--12348749	18	2.2	18	95	0	69	48	0	23	28	1.51
12350990--12351026	8	4.6	8	86	0	56	43	0	0	56	0.99
12350976--12351020	18	2.6	18	76	16	58	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12350976--12351044	16	4.3	16	78	14	63	47	0	0	52	1.00
12351016--12351067	22	2.5	22	93	6	90	50	0	0	50	1.00
12354689--12354783	36	2.6	36	74	0	100	33	14	4	47	1.64
12368892--12368918	13	2.1	13	100	0	54	55	7	22	14	1.64
12378711--12378736	3	8.7	3	100	0	52	30	0	0	69	0.89
12379584--12379636	17	3.2	17	76	12	56	54	0	0	45	0.99
12379545--12379640	43	2.3	42	75	12	99	51	1	1	46	1.14
12379686--12379766	8	10.9	8	70	13	66	44	1	0	54	1.08
12379686--12379779	23	3.9	25	82	16	103	41	1	0	57	1.06
12384669--12384701	2	17.0	2	93	6	59	51	0	0	48	1.00
12386300--12386338	20	2.0	20	89	0	60	56	2	2	38	1.27
12386383--12386421	19	2.1	19	90	4	62	43	0	0	56	0.99
12386429--12386491	26	2.4	26	80	17	69	41	0	3	55	1.16
12405906--12405979	33	2.2	34	92	2	123	45	8	13	32	1.73
12418485--12418518	15	2.3	15	89	0	50	35	8	2	52	1.47
12420069--12420125	25	2.3	24	81	6	60	43	7	7	42	1.58
12420480--12420519	15	2.6	17	81	18	52	0	45	0	55	0.99
12425137--12425227	33	2.8	33	79	14	102	30	1	4	63	1.21
12425134--12425212	29	2.7	30	84	7	99	30	1	1	67	1.07
12426977--12427008	15	2.0	17	88	11	50	43	12	25	18	1.85
12428492--12428575	23	3.5	24	82	12	102	50	0	1	48	1.08
12428567--12428611	18	2.4	18	85	10	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12428657--12428694	20	1.9	19	89	5	58	39	2	2	55	1.28
12428908--12429013	41	2.5	41	77	11	117	49	1	0	48	1.18
12428989--12429050	24	2.6	24	80	14	74	53	3	1	41	1.27
12429277--12429323	21	2.3	20	82	7	58	44	2	4	48	1.34
12439589--12439633	12	3.5	13	85	11	58	55	0	0	44	0.99
12439981--12440027	24	2.0	24	91	8	78	80	6	4	8	1.00
12440294--12440342	18	2.5	19	80	12	55	67	0	0	32	0.91
12440294--12440339	20	2.4	18	85	7	56	67	0	0	32	0.91
12440530--12440555	11	2.4	11	100	0	52	84	0	7	7	0.77
12441496--12441534	19	2.0	19	90	5	60	48	0	5	46	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120