genome.fa.s146.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  9  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933273--933325	26	2.0	26	96	0	97	26	24	20	28	1.99
934165--934216	26	2.0	26	96	0	95	28	26	17	26	1.97
932341--934548	895	2.5	896	89	1	3289	25	25	24	25	2.00
934938--935016	26	3.0	26	90	7	133	26	24	20	29	1.99
935873--935925	26	2.0	26	88	0	79	28	22	20	28	1.99
936767--936819	26	2.0	26	92	0	88	28	24	18	28	1.98
934990--942815	903	8.9	875	83	7	8879	25	24	24	25	2.00
938536--938588	26	2.0	26	92	0	88	26	22	20	30	1.98
939422--939474	26	2.0	26	96	0	97	26	26	18	28	1.98
942037--943502	715	2.1	700	88	3	2147	26	23	23	26	2.00
943628--943680	26	2.0	26	96	0	97	26	24	20	28	1.99
943434--944815	694	2.0	694	87	1	2011	23	24	25	25	2.00
945226--945278	26	2.0	26	100	0	106	26	26	20	26	1.99
945920--945972	26	2.0	26	96	0	97	28	26	20	24	1.99
945046--946413	694	2.0	694	87	2	2003	23	24	26	26	2.00
947542--947594	26	2.0	26	92	7	90	26	24	22	26	2.00
949198--952772	890	4.0	885	84	6	4331	25	25	23	25	2.00
951799--951851	26	2.0	26	92	0	88	28	24	18	28	1.98
948115--952770	863	5.3	879	82	6	5179	25	24	24	25	2.00
952713--952763	26	2.0	26	96	0	93	27	27	15	29	1.96
952554--952952	185	2.2	185	90	0	611	22	30	26	21	1.99
952899--952949	26	2.0	26	88	0	75	29	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956789--956841	26	2.0	26	96	0	97	28	20	20	30	1.98
958571--958623	26	2.0	26	88	0	79	28	24	18	28	1.98
955923--959367	893	3.9	899	85	5	4394	26	24	23	25	2.00
958604--960773	717	3.0	703	85	8	2805	26	24	23	26	2.00
960893--960946	26	2.1	26	92	0	90	25	24	22	27	2.00
961789--961841	26	2.0	26	92	0	88	26	26	20	26	1.99
964339--964391	26	2.0	26	88	0	79	24	24	20	30	1.99
965217--965269	26	2.0	26	89	7	81	26	26	16	30	1.97
966112--966164	26	2.0	26	96	0	97	28	26	18	26	1.98
962798--973180	907	11.7	892	87	3	13178	26	24	24	24	2.00
967002--967055	26	2.1	26	85	0	72	29	24	16	29	1.97
967897--967949	26	2.0	26	100	0	106	26	26	20	26	1.99
968800--968852	26	2.0	26	92	0	88	28	26	20	24	1.99
971489--971541	26	2.0	26	92	0	88	30	26	18	24	1.98
972395--972447	26	2.0	26	92	0	88	30	26	18	24	1.98
972421--974575	706	3.0	706	91	1	3329	26	23	23	25	2.00
974707--974759	26	2.0	26	92	7	90	30	26	16	26	1.97
973831--978900	876	5.7	872	80	9	4835	25	24	24	25	2.00
978251--978303	26	2.0	26	96	0	97	28	26	18	26	1.98
980710--980766	26	2.2	26	96	0	105	26	26	19	28	1.99
979039--986728	896	8.6	895	83	6	8754	25	24	24	25	2.00
982511--982562	25	2.0	26	96	3	97	25	26	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984255--984305	26	2.0	26	92	0	84	29	27	13	29	1.94
987729--991522	875	4.4	864	87	2	5126	25	24	24	25	2.00
991828--991878	26	2.0	26	100	0	102	27	23	19	29	1.98
992731--992781	26	2.0	26	96	0	93	29	23	17	29	1.97
994220--994273	26	2.1	26	96	0	99	27	24	18	29	1.98
994064--994463	185	2.2	185	82	1	480	21	27	26	24	1.99
994408--994460	26	2.0	26	85	0	70	30	18	22	28	1.98
994320--996217	896	2.1	894	87	2	2718	25	24	24	25	2.00
996584--996636	26	2.0	26	92	0	88	28	22	20	28	1.99
998449--999213	395	1.9	394	86	4	1081	22	27	25	24	2.00
1000907--1000959	26	2.0	26	92	0	88	28	24	18	28	1.98
1001550--1001844	159	1.9	159	83	1	394	16	29	30	23	1.97
1002678--1002729	26	2.0	26	88	7	79	26	23	15	34	1.94
1005332--1005384	26	2.0	26	96	0	97	24	26	20	28	1.99
1006223--1006275	26	2.0	26	88	0	79	30	22	15	32	1.94
1004474--1009788	887	6.0	887	85	4	7047	25	24	24	24	2.00
1007988--1008037	26	1.9	26	100	0	100	24	26	22	28	1.99
1008882--1008934	26	2.0	26	96	0	97	28	26	18	26	1.98
1001789--1009788	902	9.0	890	85	4	9669	25	24	24	25	2.00
1011488--1011540	26	2.0	26	96	0	97	26	24	20	28	1.99
1015326--1015378	26	2.0	26	100	0	106	26	26	20	26	1.99
1016225--1016306	26	3.2	26	94	0	137	31	24	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015326--1017891	881	2.8	914	84	6	3364	25	24	24	26	2.00
1017864--1017914	26	2.0	26	92	0	84	25	23	23	27	2.00
1018757--1018806	26	1.9	26	95	0	91	28	28	14	30	1.95
1019632--1019682	26	2.0	26	92	0	84	27	23	21	27	1.99
1020522--1020574	26	2.0	26	96	0	97	32	26	15	26	1.95
1017866--1023732	858	6.6	888	87	3	7900	26	24	23	25	2.00
1023176--1023228	26	2.0	26	88	0	79	30	24	20	24	1.99
1025743--1025795	26	2.0	26	96	0	97	28	26	18	26	1.98
1023736--1029448	869	6.4	887	85	4	6797	25	25	24	25	2.00
1027522--1027573	26	2.0	26	92	0	86	30	26	15	26	1.96
1028417--1028469	26	2.0	26	88	0	79	28	22	18	30	1.98
1026642--1029448	907	3.1	893	86	3	3771	25	25	23	25	2.00
1029317--1029369	26	2.0	26	92	0	88	28	24	18	28	1.98
1029552--1029604	26	2.0	26	96	0	97	26	24	20	28	1.99
1029446--1032106	890	3.0	893	86	4	3656	25	24	24	25	2.00
1032981--1033033	26	2.0	26	96	0	97	26	24	20	28	1.99
1033872--1033923	26	2.0	26	96	0	95	28	26	17	26	1.97
1032048--1034266	894	2.5	892	87	3	3090	25	25	23	25	2.00
1034110--1034141	12	2.7	12	95	0	55	12	34	18	34	1.89
1035535--1035587	26	2.0	26	88	0	79	28	22	20	28	1.99
1034652--1041132	890	7.2	892	86	4	8042	25	24	24	25	2.00
1039092--1039144	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039980--1040029	26	1.9	26	91	0	82	24	24	18	34	1.96
1040880--1040929	26	1.9	26	91	0	82	26	26	18	30	1.98
1042598--1044059	714	2.1	697	86	5	2005	26	23	23	26	2.00
1044172--1044224	26	2.0	26	92	0	88	26	22	20	30	1.98
1044869--1044918	26	1.9	26	95	0	91	26	26	20	28	1.99
1045765--1045817	26	2.0	26	100	0	106	26	26	20	26	1.99
1044671--1047154	894	2.8	898	91	1	3826	24	25	25	24	2.00
1046659--1046711	26	2.0	26	88	0	79	28	22	18	30	1.98
1047352--1047404	26	2.0	26	92	0	88	28	24	22	24	2.00
1046470--1047845	693	2.0	692	86	2	1958	23	24	26	26	2.00
1048972--1049024	26	2.0	26	89	7	81	28	24	20	26	1.99
1049727--1049777	26	2.0	26	92	0	84	29	25	17	27	1.98
1050635--1054186	891	4.0	885	83	7	4245	25	25	23	25	2.00
1049753--1054158	861	5.0	868	84	5	5331	25	24	23	25	2.00
1053973--1054376	185	2.2	185	89	0	603	22	28	26	21	1.99
1054319--1054369	26	2.0	26	96	0	93	25	27	19	27	1.99
1055222--1055273	26	2.0	26	88	0	77	28	26	17	26	1.97
1055686--1055735	25	2.0	26	84	4	66	58	10	6	26	1.54
1056108--1056160	26	2.0	26	96	0	97	28	26	18	26	1.98
1054164--1057507	907	3.7	894	85	5	4392	24	25	24	25	2.00
1057015--1057067	26	2.0	26	96	0	97	26	24	20	28	1.99
1057203--1057838	333	1.9	334	90	1	1026	29	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1060501--1060552	26	2.0	26	88	0	77	28	23	19	28	1.98
1061982--1062035	26	2.0	27	92	3	92	27	25	20	25	1.99
1062887--1062939	26	2.0	26	92	7	90	28	28	16	26	1.97
1061813--1075152	892	15.1	898	85	5	16157	25	24	24	25	2.00
1065107--1065134	13	2.2	13	100	0	56	42	28	7	21	1.79
1065540--1065592	26	2.0	26	92	0	88	26	22	20	30	1.98
1067277--1067329	26	2.0	26	85	0	70	24	22	20	32	1.98
1069021--1069073	26	2.0	26	92	0	88	28	24	18	28	1.98
1069916--1069968	26	2.0	26	88	0	79	30	24	16	28	1.97
1068152--1075132	893	7.8	892	86	4	8968	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120