genome.fa.s146.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  96  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12968997--12969031	18	1.9	18	88	0	52	37	0	8	54	1.31
12974297--12974323	11	2.5	11	100	0	54	85	7	7	0	0.75
12974286--12974339	17	3.2	17	78	7	56	85	5	5	3	0.84
12974296--12974334	11	3.4	11	80	13	51	87	5	7	0	0.68
12975647--12975718	29	2.5	30	75	6	85	77	9	1	11	1.05
12975665--12975714	23	2.2	23	96	0	91	86	12	2	0	0.67
12976073--12976185	41	2.8	41	87	5	149	38	15	14	31	1.88
12976310--12976569	109	2.4	109	91	3	425	24	19	20	36	1.95
12976534--12976658	22	5.7	22	77	8	121	23	24	24	28	2.00
12976419--12976964	196	2.8	195	89	1	797	24	21	19	33	1.97
12976772--12976848	22	3.5	21	81	10	91	29	25	16	27	1.97
12976921--12976987	23	3.0	23	88	2	100	23	25	22	28	1.99
12976927--12976992	22	3.0	22	86	2	87	25	24	21	28	1.99
12977935--12978343	47	8.6	47	84	6	475	28	11	24	35	1.90
12977935--12978469	95	5.5	95	84	5	612	28	11	23	36	1.90
12978359--12978388	13	2.3	13	94	0	51	36	6	10	46	1.64
12978372--12978471	47	2.1	47	90	0	155	26	13	23	38	1.91
12978276--12978473	108	1.8	108	89	1	281	27	12	22	36	1.91
12979587--12979630	19	2.3	19	88	0	61	36	45	15	2	1.59
12979760--12979794	18	1.9	18	88	0	52	37	0	8	54	1.31
12989714--12989758	21	2.2	21	88	7	67	42	20	2	35	1.64
12994926--12994994	11	6.1	11	77	11	50	72	4	2	20	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12994929--12994994	35	1.9	35	84	9	91	72	4	3	19	1.15
12995236--12995695	42	11.1	41	80	7	434	44	17	12	25	1.84
12995267--12995666	166	2.4	163	85	4	529	45	17	12	25	1.82
12995236--12995666	82	5.2	81	82	7	469	44	17	12	25	1.84
12996088--12996150	21	3.0	21	86	4	83	39	19	6	34	1.77
12996464--12996507	23	1.9	23	81	9	54	27	22	4	45	1.72
13000192--13000256	23	2.8	23	83	4	69	55	1	15	27	1.49
13001754--13001789	8	4.6	8	86	6	56	19	0	2	77	0.88
13002025--13002056	15	2.2	15	94	5	57	78	0	0	21	0.76
13002776--13002849	12	6.5	12	83	11	70	77	2	0	20	0.90
13002784--13002857	23	3.2	22	81	14	96	79	2	0	17	0.84
13002784--13002857	12	6.5	11	83	12	87	79	2	0	17	0.84
13004548--13004603	16	3.6	15	80	11	60	28	1	26	42	1.65
13004628--13004704	30	2.6	30	79	4	75	23	1	24	50	1.57
13004713--13004783	29	2.4	29	88	4	108	21	0	30	47	1.51
13004730--13004782	14	3.6	14	77	7	61	16	0	32	50	1.46
13005160--13005189	4	7.5	4	92	0	51	73	0	0	26	0.84
13006405--13006454	16	3.0	18	77	19	63	42	0	0	58	0.98
13006833--13006880	22	2.2	22	88	7	71	37	12	18	31	1.88
13006968--13007514	132	4.1	131	78	6	487	38	15	19	25	1.91
13007039--13007520	264	1.8	265	81	4	596	39	15	19	25	1.91
13007954--13008055	41	2.5	41	85	6	127	36	14	19	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13007992--13008020	15	1.9	15	100	0	58	41	13	24	20	1.89
13009048--13009097	8	5.9	8	82	13	55	4	2	8	86	0.78
13009050--13009097	10	4.6	10	82	17	53	4	2	6	87	0.73
13009519--13009569	8	6.1	8	74	17	50	11	5	1	80	0.97
13010140--13010168	10	3.0	10	95	5	51	0	6	0	93	0.36
13016218--13016403	87	2.1	87	78	8	209	20	0	30	47	1.54
13016341--13016444	7	14.4	7	67	13	50	18	0	36	45	1.50
13016323--13016403	15	5.7	14	68	8	65	16	0	33	50	1.45
13016218--13016449	29	8.0	29	73	11	163	21	0	31	47	1.54
13016394--13016444	16	3.4	16	71	15	54	19	0	35	45	1.51
13016779--13016830	17	2.9	17	88	5	68	76	0	0	23	0.78
13016788--13016829	13	3.2	13	80	10	50	78	0	0	21	0.75
13016781--13016830	21	2.3	21	86	10	66	78	0	0	22	0.76
13017863--13017917	27	2.0	27	100	0	110	49	10	3	36	1.56
13018156--13018197	19	2.3	19	83	4	50	69	2	14	14	1.30
13020107--13020352	87	2.8	87	86	7	297	21	0	31	46	1.55
13020103--13020352	29	8.6	28	77	10	191	21	0	31	46	1.55
13020235--13020341	14	7.4	14	71	10	81	25	0	31	42	1.55
13020107--13020352	58	4.2	58	79	12	229	21	0	31	46	1.55
13020643--13020699	19	3.1	18	76	16	62	26	1	5	66	1.22
13020644--13020693	21	2.5	20	83	9	57	26	2	4	68	1.18
13021968--13022009	16	2.6	16	88	0	57	14	0	2	83	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13021967--13022008	19	2.3	19	87	4	59	11	0	2	85	0.68
13021978--13022055	25	3.1	26	76	10	63	30	0	0	69	0.89
13022013--13022059	16	2.8	18	81	18	66	42	0	0	57	0.98
13025096--13025177	36	2.2	37	84	4	112	39	17	15	28	1.90
13026667--13026696	2	15.0	2	92	0	51	46	0	3	50	1.18
13032365--13032390	13	2.0	13	100	0	52	0	0	7	92	0.39
13032422--13032456	18	1.9	18	94	0	61	20	0	31	48	1.50
13035651--13035718	25	2.8	24	78	8	75	33	17	16	32	1.92
13038280--13038323	21	2.1	21	100	0	88	52	15	13	18	1.75
13048902--13048959	29	2.0	29	83	9	75	67	3	25	3	1.22
13049319--13049368	20	2.5	20	87	6	75	74	8	10	8	1.24
13050193--13050287	17	5.6	16	70	11	64	28	8	9	53	1.62
13050256--13050313	30	1.9	30	89	6	91	29	10	5	55	1.55
13050692--13050771	26	3.1	26	88	0	115	52	25	5	17	1.64
13050692--13050771	39	2.1	39	87	0	115	52	25	5	17	1.64
13050692--13050771	13	6.2	13	83	0	88	52	25	5	17	1.64
13053756--13053785	3	10.0	3	92	0	51	66	3	0	30	1.07
13054619--13054659	21	1.9	21	85	5	55	26	4	19	48	1.69
13061307--13061354	17	2.8	17	83	3	60	18	0	14	66	1.25
13061901--13061938	13	3.1	12	85	14	51	34	0	7	57	1.28
13062480--13062517	19	2.1	18	90	5	58	26	5	15	52	1.64
13062521--13062579	25	2.6	22	72	27	61	33	3	6	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13062551--13062603	19	2.8	18	77	8	61	30	5	9	54	1.55
13065419--13065518	47	2.1	47	96	0	182	50	6	20	24	1.70
13069731--13070043	91	3.4	91	77	7	303	34	6	15	44	1.71
13069735--13069985	137	1.8	138	80	7	305	35	5	14	44	1.70
13069735--13070036	46	6.7	45	70	15	185	34	6	14	45	1.70
13069966--13070011	21	2.2	21	84	0	56	34	6	8	50	1.59
13070169--13070249	17	4.9	16	75	10	56	35	16	9	38	1.81
13070358--13070416	17	3.5	17	86	4	75	28	15	11	44	1.82
13070451--13070515	33	1.9	34	87	3	96	21	16	13	47	1.82
13070457--13070527	34	2.1	34	84	5	90	26	15	11	46	1.79
13071166--13071208	18	2.4	19	84	11	63	25	0	9	65	1.22
13071979--13072022	13	3.3	13	78	6	52	22	2	9	65	1.32
13071980--13072031	27	1.9	27	88	0	77	23	7	7	61	1.49
13078634--13078676	18	2.4	18	88	0	59	20	13	44	20	1.86
13079818--13079842	13	1.9	13	100	0	50	0	12	0	88	0.53
13084951--13084988	16	2.4	16	95	0	67	31	0	2	65	1.06
13085263--13085368	9	12.5	8	69	17	54	61	1	1	34	1.18
13085284--13085365	17	4.6	17	80	8	92	58	1	1	39	1.14
13085278--13085354	37	2.1	37	88	9	113	59	0	1	38	1.06
13085407--13085445	19	2.0	19	95	5	69	66	5	0	28	1.12
13085430--13085463	17	2.0	17	88	0	50	47	5	0	47	1.26
13085499--13085611	10	11.9	10	66	12	51	59	5	0	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13085502--13085594	30	3.2	29	75	8	93	60	5	0	34	1.20
13087153--13087200	20	2.3	21	82	3	62	50	0	2	47	1.12
13086864--13087316	226	2.0	224	90	0	708	42	9	6	41	1.64
13088147--13088217	36	2.0	36	86	5	99	39	4	4	52	1.41
13088138--13088234	9	10.6	9	73	6	79	39	3	3	54	1.32
13088186--13088234	19	2.6	18	87	9	71	38	2	0	59	1.09
13090089--13090113	9	2.8	9	100	0	50	44	0	0	56	0.99
13092690--13092784	50	1.9	50	91	0	154	36	25	8	29	1.85
13093509--13093541	18	1.9	17	88	11	50	48	0	0	51	1.00
13097689--13097812	67	1.9	67	85	6	173	20	22	7	49	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120