genome.fa.s146.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  15  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1634110--1634355	45	5.5	44	72	6	156	20	27	33	18	1.96
1634153--1634347	90	2.2	90	81	3	223	21	27	32	18	1.97
1636755--1636804	26	1.9	26	87	0	73	24	26	20	30	1.98
1638223--1638274	26	2.0	26	85	7	70	26	25	19	28	1.98
1639104--1639134	12	2.6	12	100	0	62	12	29	19	38	1.89
1640137--1640189	26	2.0	26	92	0	88	30	26	16	26	1.97
1640628--1640776	45	3.3	45	82	1	174	18	32	30	17	1.94
1641563--1641615	26	2.0	26	82	7	63	26	24	20	28	1.99
1643382--1643433	26	2.0	26	88	7	79	26	25	19	28	1.98
1644348--1644399	26	2.0	26	96	3	97	25	23	21	30	1.99
1643573--1644767	611	2.0	612	82	3	1465	21	27	28	22	1.99
1644864--1644899	18	2.1	17	89	5	54	50	0	41	8	1.33
1646131--1646228	45	2.2	45	88	0	151	16	32	33	17	1.92
1647170--1647222	26	2.0	26	85	7	72	26	26	18	28	1.98
1647523--1647575	26	2.0	26	92	0	88	28	22	20	28	1.99
1648016--1648128	45	2.5	45	82	5	131	17	27	34	20	1.95
1648329--1648381	26	2.0	26	88	0	79	28	22	18	30	1.98
1649380--1649431	26	2.0	26	84	0	68	28	26	15	28	1.96
1649453--1649477	12	2.1	12	100	0	50	24	28	40	8	1.83
1649747--1649799	26	2.0	26	96	0	97	28	26	18	26	1.98
1649717--1650405	320	2.2	320	82	0	804	21	28	25	24	1.99
1650067--1650119	26	2.0	26	85	7	72	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651708--1651759	26	2.0	26	88	0	77	30	28	17	23	1.97
1652075--1652127	26	2.0	26	92	0	88	28	24	18	28	1.98
1652048--1652721	320	2.1	320	81	1	760	21	27	25	24	2.00
1654035--1654086	26	2.0	26	96	0	95	26	28	19	25	1.98
1654400--1654452	26	2.0	26	88	0	79	28	22	18	30	1.98
1654305--1654897	162	3.7	162	73	9	519	20	27	26	25	1.99
1654720--1654772	26	2.0	26	85	0	70	28	24	18	28	1.98
1654373--1654995	320	1.9	320	84	1	827	21	26	26	24	1.99
1655212--1655323	44	2.5	45	82	1	136	16	27	34	20	1.95
1655256--1655422	90	1.9	89	82	5	210	19	27	32	19	1.96
1656721--1656773	26	2.0	26	88	0	79	28	22	18	30	1.98
1657220--1657394	45	3.9	44	74	7	129	20	33	29	16	1.95
1657256--1657450	90	2.2	90	78	3	196	21	29	30	18	1.97
1657973--1658025	26	2.0	26	92	7	90	26	26	20	26	1.99
1657909--1658649	376	2.0	364	79	6	803	19	27	28	24	1.99
1659126--1659318	45	4.3	44	71	9	138	20	30	30	19	1.97
1660272--1660324	26	2.0	26	89	7	81	32	24	16	26	1.97
1660627--1660679	26	2.0	26	96	0	97	26	24	20	28	1.99
1662793--1662848	26	2.2	26	90	0	85	32	23	16	28	1.96
1663254--1663353	45	2.2	45	83	3	121	18	29	35	18	1.94
1664344--1664379	12	3.0	12	95	0	63	27	16	38	16	1.90
1664650--1664702	26	2.0	26	92	7	90	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1665151--1665258	45	2.4	45	76	3	110	21	26	35	16	1.95
1666473--1666526	26	2.1	26	89	0	81	31	24	18	25	1.97
1666997--1667021	13	1.9	13	100	0	50	24	36	16	24	1.94
1668191--1668242	26	2.0	26	88	0	77	32	26	15	25	1.95
1668692--1668854	45	3.6	44	75	3	155	20	31	31	15	1.94
1671945--1672102	45	3.5	45	78	3	138	18	28	32	20	1.96
1671945--1672142	90	2.2	90	80	3	211	19	27	32	20	1.96
1673004--1673056	26	2.0	26	92	0	88	26	22	22	28	1.99
1673529--1673580	26	2.0	26	92	0	86	28	28	17	25	1.97
1672804--1673909	525	2.1	522	82	3	1335	20	26	28	23	1.99
1675489--1675541	26	2.0	26	88	0	79	30	26	18	24	1.98
1675844--1675896	26	2.0	26	85	0	70	24	20	22	32	1.98
1677223--1677275	26	2.0	26	85	7	72	28	24	18	28	1.98
1678054--1678259	45	4.6	45	77	6	159	18	27	34	19	1.95
1678093--1678259	90	1.8	91	84	1	228	17	25	34	21	1.96
1678057--1678290	90	2.6	90	80	4	222	18	27	34	19	1.95
1679191--1679243	26	2.0	26	89	7	81	26	28	20	24	1.99
1680053--1680252	45	4.5	44	74	5	141	22	29	30	18	1.97
1686480--1686663	90	2.0	90	92	2	307	27	15	31	25	1.95
1688378--1688547	45	3.8	45	77	3	153	21	28	31	18	1.97
1689494--1689545	26	2.0	25	92	3	86	26	25	21	26	1.99
1689687--1689743	26	2.2	26	90	0	87	33	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689377--1689893	197	2.6	195	82	2	653	21	25	29	23	1.99
1690057--1690262	45	4.6	45	73	2	153	20	29	31	18	1.97
1691202--1691254	26	2.0	26	85	7	72	28	24	18	28	1.98
1691763--1691907	45	3.2	45	78	9	161	18	27	35	18	1.95
1692831--1692883	26	2.0	26	85	0	70	28	24	22	24	2.00
1693187--1693239	26	2.0	26	92	0	88	24	28	22	24	2.00
1693363--1693413	26	2.0	26	88	7	77	27	29	17	25	1.98
1694058--1694212	45	3.5	45	75	9	129	18	29	32	19	1.95
1694338--1694390	26	2.0	26	89	7	81	26	30	18	24	1.98
1696233--1696284	26	2.0	26	92	3	88	28	21	19	30	1.97
1696974--1696998	13	1.9	13	100	0	50	24	36	16	24	1.94
1697871--1697923	26	2.0	26	96	0	97	26	28	20	24	1.99
1697784--1698096	170	1.8	170	86	0	455	21	26	27	24	1.99
1698041--1698093	26	2.0	26	88	0	79	30	28	16	24	1.97
1699017--1699065	24	2.0	25	92	4	82	32	26	30	10	1.89
1699142--1699194	26	2.0	26	92	0	88	28	24	18	28	1.98
1699586--1699952	196	1.9	196	82	3	461	21	26	28	22	1.99
1700587--1700791	45	4.6	45	74	2	169	20	29	31	19	1.96
1701721--1701773	26	2.0	26	82	7	63	28	26	18	26	1.98
1702401--1702600	45	4.5	45	75	3	134	20	29	31	18	1.96
1706660--1706712	26	2.0	26	96	0	97	28	26	18	26	1.98
1707005--1707205	45	4.5	45	79	2	206	20	28	33	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1707003--1707181	90	2.0	90	86	4	254	20	30	32	15	1.94
1707208--1707232	13	1.9	13	100	0	50	32	36	8	24	1.84
1708108--1708160	26	2.0	26	85	7	72	30	24	20	24	1.99
1708931--1709101	90	1.9	90	81	2	209	21	28	30	19	1.98
1709568--1709618	26	2.0	26	88	7	77	29	25	17	27	1.98
1711271--1711323	26	2.0	26	85	0	70	30	26	16	26	1.97
1711613--1711665	26	2.0	26	96	0	97	28	26	18	26	1.98
1713244--1713296	26	2.0	26	85	7	72	33	24	15	26	1.95
1714257--1714309	26	2.0	26	88	0	79	26	24	20	28	1.99
1714239--1715009	343	2.2	342	80	5	825	21	26	27	24	1.99
1714638--1714982	159	2.2	157	80	5	365	20	26	28	24	1.99
1714955--1715007	26	2.0	26	88	0	79	30	22	18	28	1.98
1714586--1715568	506	1.9	505	86	1	1394	21	25	28	24	1.99
1715463--1715512	26	1.9	26	87	0	73	32	22	14	32	1.93
1716894--1717252	157	2.3	159	83	4	433	19	28	29	22	1.98
1717408--1717550	45	3.2	44	77	5	144	18	27	32	21	1.97
1725901--1725953	26	2.0	26	96	0	97	28	26	18	26	1.98
1726190--1726442	45	5.6	45	72	5	170	20	29	32	18	1.96
1726207--1726383	90	2.0	90	80	2	203	18	31	32	18	1.95
1727246--1727298	26	2.0	26	100	0	106	26	26	20	26	1.99
1727740--1727893	45	3.5	44	76	1	146	18	30	31	19	1.96
1729703--1729823	45	2.7	45	71	2	100	23	33	25	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1736327--1736379	26	2.0	26	96	0	97	30	28	16	24	1.97
1736683--1736735	26	2.0	26	88	0	79	28	22	16	32	1.96
1737194--1737322	45	2.9	44	78	6	125	19	28	30	21	1.98
1738274--1738326	26	2.0	26	88	0	79	28	26	18	26	1.98
1739878--1740238	196	1.8	195	83	1	472	23	26	27	22	2.00
1740731--1740890	45	3.6	45	80	1	169	16	30	33	18	1.94
1740737--1740902	90	1.8	90	84	2	226	16	31	33	18	1.94
1740737--1740930	90	2.1	89	81	5	212	18	29	33	19	1.95
1741704--1741999	159	1.9	159	83	2	389	17	27	31	23	1.97
1742418--1742570	45	3.4	45	75	5	148	21	29	30	18	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120