genome.fa.s146.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  45  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5134923--5134975	26	2.0	26	100	0	106	26	26	20	26	1.99
5136676--5136754	26	3.0	26	100	0	158	26	26	20	26	1.99
5137601--5137653	26	2.0	26	96	0	97	32	26	15	26	1.95
5138322--5138374	26	2.0	26	96	0	97	26	24	20	28	1.99
5137416--5138837	731	2.0	721	86	1	2011	24	25	24	25	2.00
5139198--5139250	26	2.0	26	92	0	88	26	24	20	28	1.99
5140051--5140101	26	2.0	26	96	0	93	25	25	19	29	1.99
5139428--5141067	853	2.0	825	84	6	2146	26	25	21	26	2.00
5140232--5153099	902	14.3	902	86	3	16344	26	24	23	25	2.00
5144475--5144527	26	2.0	26	92	0	88	30	26	16	26	1.97
5146274--5146326	26	2.0	26	85	0	70	30	22	20	26	1.98
5147166--5147213	25	1.9	25	95	0	87	27	29	20	22	1.99
5148069--5148147	26	3.0	26	92	3	124	30	24	16	29	1.96
5148997--5149047	26	2.0	26	96	0	93	29	23	19	27	1.98
5149897--5149949	26	2.0	26	92	0	88	26	26	20	26	1.99
5150799--5150851	26	2.0	26	92	0	88	30	22	20	26	1.98
5151700--5151752	26	2.0	26	92	0	88	26	22	22	28	1.99
5153135--5153186	25	2.0	26	88	3	79	26	21	23	28	1.99
5155785--5155837	26	2.0	26	96	0	97	26	26	22	24	2.00
5159335--5159384	26	1.9	26	91	0	82	26	24	18	32	1.97
5156809--5161492	899	5.2	895	86	3	5925	25	24	24	25	2.00
5161125--5161177	26	2.0	26	89	7	81	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5161907--5161959	26	2.0	26	85	7	72	24	20	22	32	1.98
5163689--5163741	26	2.0	26	92	0	88	28	28	16	26	1.97
5161485--5168561	892	8.0	896	85	4	8911	25	24	24	25	2.00
5165494--5165545	25	2.0	25	88	3	77	28	25	19	26	1.98
5168119--5168171	26	2.0	26	92	7	90	30	26	16	26	1.97
5168886--5168939	26	2.0	27	89	3	83	25	27	18	27	1.98
5167801--5169332	770	2.0	760	87	2	2201	23	26	24	25	2.00
5170684--5170736	26	2.0	26	92	0	88	28	24	20	26	1.99
5168560--5171681	893	3.5	893	86	3	4216	25	25	24	24	2.00
5171581--5171633	26	2.0	26	82	7	63	26	24	18	30	1.98
5171994--5172347	158	2.2	158	85	2	451	21	25	29	23	1.99
5172321--5172373	26	2.0	26	96	0	97	28	26	18	26	1.98
5173220--5173272	26	2.0	26	96	0	97	26	24	20	28	1.99
5172139--5185588	903	15.0	901	79	7	12778	25	24	24	25	2.00
5176818--5176870	26	2.0	26	85	7	72	24	30	20	24	1.99
5178579--5178631	26	2.0	26	96	0	97	26	24	22	26	2.00
5179482--5179534	26	2.0	26	100	0	106	26	26	20	26	1.99
5180997--5181371	159	2.4	159	81	2	430	20	29	28	22	1.98
5181345--5181397	26	2.0	26	100	0	106	26	26	20	26	1.99
5184017--5184069	26	2.0	26	92	7	90	33	26	13	26	1.93
5184896--5184948	26	2.0	26	85	0	70	30	26	18	24	1.98
5187316--5187394	26	3.0	26	98	0	149	26	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5190705--5190755	26	2.0	26	96	0	93	25	25	19	29	1.99
5191570--5191620	26	2.0	26	96	0	93	25	25	19	29	1.99
5188959--5192599	865	4.1	866	88	5	4765	25	24	24	25	2.00
5192462--5192514	26	2.0	26	89	7	81	28	22	18	30	1.98
5194726--5194793	26	2.6	26	97	0	127	27	23	17	30	1.97
5195639--5195691	26	2.0	26	92	0	88	28	28	18	24	1.98
5192687--5197888	896	5.8	897	82	7	5858	25	24	24	25	2.00
5197431--5197482	26	2.0	26	96	0	95	26	25	19	28	1.98
5199133--5199185	26	2.0	26	96	0	97	28	26	18	26	1.98
5199807--5199896	46	1.9	46	93	2	153	43	5	8	42	1.59
5199854--5200048	58	3.3	58	84	7	277	35	12	7	44	1.69
5200069--5200098	14	2.1	14	93	0	51	76	0	6	16	0.99
5200590--5200629	11	3.6	11	86	0	53	32	30	20	17	1.95
5201203--5201337	10	13.9	10	70	21	65	67	3	1	27	1.16
5201309--5201350	14	3.1	14	79	6	50	66	7	0	26	1.17
5201549--5201599	1	51.0	1	80	0	57	0	0	9	90	0.46
5201549--5201596	14	3.7	13	89	8	71	0	0	10	89	0.48
5201549--5201599	24	2.2	22	89	6	75	0	0	9	90	0.46
5201606--5201979	42	9.1	42	86	8	504	35	23	16	24	1.95
5201606--5201979	83	4.6	83	88	7	543	35	23	16	24	1.95
5201829--5201895	34	2.0	34	88	2	100	32	22	17	26	1.96
5203226--5203292	23	3.0	21	75	14	71	7	20	0	71	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5203227--5203278	24	2.2	23	83	10	61	7	17	0	75	1.03
5204426--5204454	12	2.4	12	100	0	58	24	6	34	34	1.82
5207121--5207149	6	4.8	6	100	0	58	68	13	0	17	1.20
5207184--5207362	59	3.0	59	90	4	279	33	12	8	45	1.72
5207370--5207427	14	4.2	14	76	8	57	77	1	5	15	1.02
5207377--5207427	17	2.9	17	80	11	59	78	1	3	15	0.99
5207380--5207438	11	5.2	11	75	20	50	76	1	5	16	1.05
5207414--5207453	17	2.4	16	84	8	53	72	0	5	22	1.04
5207462--5207508	24	1.9	25	86	4	69	82	4	2	10	0.88
5207890--5207941	11	4.7	11	85	0	68	25	23	28	23	1.99
5207890--5207933	22	2.0	22	95	0	79	27	20	27	25	1.99
5208514--5208553	14	2.8	14	88	3	53	67	0	0	32	0.91
5208569--5208648	36	2.2	35	80	12	83	67	2	2	27	1.16
5208604--5208664	27	2.2	27	80	11	70	68	3	1	26	1.14
5208569--5208650	24	3.4	23	75	20	69	67	2	2	28	1.16
5208575--5208664	24	3.7	23	71	21	67	67	3	2	26	1.17
5209518--5209569	26	2.0	26	88	3	79	28	23	19	28	1.98
5209602--5210993	709	2.0	708	89	1	2173	26	23	23	26	2.00
5211121--5211171	26	2.0	26	100	0	102	27	25	19	27	1.99
5213750--5213802	26	2.0	26	96	0	97	26	24	20	28	1.99
5214646--5214698	26	2.0	26	96	0	97	28	26	18	26	1.98
5212890--5216623	893	4.2	897	87	2	5199	26	24	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5215541--5215593	26	2.0	26	96	0	97	26	24	20	28	1.99
5216440--5216492	26	2.0	26	92	0	88	26	26	18	28	1.98
5220085--5220137	26	2.0	26	96	0	97	26	28	20	24	1.99
5221836--5221888	26	2.0	26	92	0	88	26	26	20	26	1.99
5222742--5222792	26	2.0	26	88	0	75	27	27	13	31	1.94
5223638--5223690	26	2.0	26	96	0	97	32	26	16	24	1.97
5219422--5224400	893	5.6	895	84	5	6052	25	24	23	25	2.00
5224374--5224426	26	2.0	26	88	0	79	26	24	20	28	1.99
5224941--5224993	26	2.0	26	100	0	106	26	26	20	26	1.99
5224034--5225149	571	2.0	560	87	4	1559	26	23	24	25	2.00
5226368--5226420	26	2.0	26	92	0	88	26	26	18	28	1.98
5227260--5227311	26	2.0	26	92	0	86	30	25	17	26	1.97
5226114--5230616	893	5.0	892	84	7	5473	25	25	23	25	2.00
5228153--5228205	26	2.0	26	100	0	106	30	22	20	26	1.98
5228183--5228274	47	2.0	47	93	0	157	28	25	27	19	1.99
5229936--5229988	26	2.0	26	92	0	88	30	24	18	26	1.98
5228232--5230616	874	2.7	871	84	8	3093	26	24	23	25	2.00
5230667--5230729	26	2.4	26	97	0	117	28	25	20	25	1.99
5229923--5231363	733	2.0	731	89	1	2237	27	23	23	26	2.00
5233291--5233343	26	2.0	26	92	0	88	26	24	18	30	1.98
5234194--5234246	26	2.0	26	92	0	88	26	24	18	30	1.98
5232413--5257795	903	27.8	898	74	11	15141	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5236004--5236063	26	2.4	26	83	10	81	26	28	18	26	1.98
5236896--5236948	26	2.0	26	96	0	97	26	28	20	24	1.99
5239540--5239592	26	2.0	26	96	0	97	28	26	20	24	1.99
5241149--5241201	26	2.0	26	92	0	88	30	26	16	26	1.97
5241506--5241558	26	2.0	26	96	0	97	26	28	18	26	1.98
5242256--5242308	26	2.0	26	96	0	97	28	24	20	26	1.99
5243429--5243796	159	2.3	159	86	1	495	19	26	28	25	1.99
5243770--5243822	26	2.0	26	96	0	97	28	26	18	26	1.98
5245391--5245443	26	2.0	26	85	0	70	32	20	20	26	1.98
5247152--5247204	26	2.0	26	92	7	90	26	22	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120