genome.fa.s146.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  66  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7586324--7586432	22	5.0	22	75	9	89	29	12	24	33	1.93
7586323--7586432	44	2.5	43	75	7	114	30	12	24	32	1.92
7586431--7586539	37	3.0	36	77	11	123	52	13	15	18	1.75
7586550--7586607	22	2.7	22	86	2	64	31	6	24	37	1.82
7586560--7586607	22	2.2	22	92	0	78	29	8	25	37	1.85
7586571--7586622	22	2.4	22	90	0	77	23	15	30	30	1.95
7586591--7586650	22	2.7	22	84	0	66	30	16	25	28	1.97
7586843--7586901	22	2.7	22	86	5	75	27	18	25	28	1.98
7586614--7586915	127	2.3	130	80	2	342	34	13	16	35	1.88
7586870--7587031	84	1.9	84	82	2	200	38	17	16	27	1.91
7588644--7588668	13	1.9	13	100	0	50	0	8	4	88	0.64
7589164--7589220	12	4.4	12	73	16	51	8	1	7	82	0.91
7595859--7595915	30	1.9	30	82	10	73	19	0	35	45	1.50
7595940--7596009	15	4.7	15	72	13	54	30	2	24	42	1.69
7596014--7596098	29	2.9	28	81	8	73	23	0	25	50	1.49
7596037--7596114	22	3.6	21	76	11	68	25	1	24	48	1.59
7597543--7597619	36	2.1	36	82	0	91	24	7	45	22	1.78
7603637--7603675	2	20.0	2	89	5	62	53	0	0	46	1.00
7613585--7613631	22	2.1	22	88	0	67	36	4	17	42	1.68
7613739--7613821	43	1.9	44	90	2	132	22	13	18	45	1.84
7615119--7615162	22	2.1	21	88	12	65	61	0	2	36	1.09
7616075--7616121	24	2.0	24	95	0	85	40	10	0	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7626284--7626318	17	1.9	17	88	11	52	71	5	0	22	1.07
7626542--7626577	14	2.6	13	87	12	54	83	0	0	16	0.65
7626543--7626575	18	1.9	17	88	11	50	81	0	0	18	0.68
7626543--7626576	17	1.9	18	88	5	52	82	0	0	17	0.67
7626721--7626763	18	2.3	18	80	4	50	39	2	6	51	1.42
7627563--7628027	231	2.0	230	89	5	706	27	26	14	31	1.95
7631229--7631254	10	2.6	10	100	0	52	92	0	0	7	0.39
7633372--7633403	12	2.7	12	100	0	64	25	34	9	31	1.87
7634743--7634789	24	2.0	24	95	0	85	40	10	0	48	1.38
7636336--7636383	20	2.4	20	92	0	78	60	10	0	29	1.30
7644975--7645009	17	1.9	17	88	11	52	71	5	0	22	1.07
7645395--7645520	62	2.1	58	79	10	128	41	4	3	50	1.39
7645500--7645528	14	2.0	15	93	6	51	55	0	0	44	0.99
7645647--7645717	36	2.0	36	97	0	133	19	33	15	30	1.93
7646288--7646756	231	2.0	235	92	2	775	28	26	13	31	1.94
7651258--7651315	25	2.4	25	80	5	66	48	1	0	50	1.11
7651293--7651359	28	2.4	27	82	5	71	50	5	0	43	1.26
7652180--7652219	21	1.9	21	85	10	55	7	55	5	32	1.50
7653547--7653575	3	9.7	3	100	0	58	68	0	0	31	0.89
7657205--7657239	16	2.2	16	90	5	54	28	0	2	68	1.04
7657461--7657488	14	2.0	14	100	0	56	21	0	0	78	0.75
7657458--7657500	21	2.0	23	86	9	63	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7657995--7658065	30	2.3	31	82	7	81	43	7	16	32	1.75
7664502--7664536	16	2.2	16	94	0	61	31	14	11	42	1.81
7672201--7672239	15	2.6	15	100	0	78	20	30	20	28	1.98
7672452--7672501	4	12.5	4	78	16	50	46	0	0	54	1.00
7672426--7672500	17	4.8	16	71	22	54	45	0	0	54	0.99
7672453--7672516	29	2.2	28	83	2	74	48	1	1	48	1.20
7673058--7673100	22	2.0	22	85	0	59	25	11	27	34	1.91
7673191--7673255	22	3.0	22	81	2	87	32	12	23	32	1.91
7673430--7673633	103	2.0	104	88	4	306	36	15	12	35	1.85
7673771--7673825	22	2.5	22	78	0	56	27	18	23	30	1.97
7674104--7674154	18	2.8	18	90	0	75	39	9	23	27	1.86
7675644--7675684	11	3.8	11	75	18	50	0	21	0	78	0.76
7683846--7683870	2	12.5	2	100	0	50	0	0	48	52	1.00
7684221--7684274	22	2.5	22	71	0	63	16	3	46	33	1.65
7686880--7687376	131	3.8	130	78	7	406	38	9	9	43	1.69
7687078--7687499	131	3.2	132	79	3	350	38	8	8	45	1.64
7689150--7689211	32	1.9	32	90	0	97	37	16	4	41	1.69
7691474--7692069	295	2.0	293	85	3	797	27	13	12	46	1.79
7692219--7692275	30	1.9	30	85	0	78	33	8	29	28	1.87
7692724--7692971	100	2.5	102	79	10	271	41	9	11	37	1.74
7692766--7692958	102	1.9	100	80	10	223	40	9	11	37	1.75
7697888--7698080	106	1.8	106	89	2	309	47	5	9	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7700749--7700834	40	2.1	41	86	2	120	47	10	15	26	1.77
7704822--7704880	29	2.2	26	87	9	82	69	10	6	13	1.35
7704925--7704992	28	2.5	28	90	4	104	26	10	20	42	1.84
7705044--7705085	15	2.6	16	81	7	50	11	2	26	59	1.45
7705559--7706253	348	2.0	348	95	0	1266	42	9	5	43	1.59
7710411--7710458	22	2.2	22	84	0	60	10	12	0	77	1.00
7716966--7717305	167	2.0	167	99	0	671	32	12	10	43	1.77
7719999--7720040	13	3.2	13	80	12	50	19	0	9	71	1.13
7719999--7720044	14	3.4	14	73	11	51	19	0	10	69	1.17
7720700--7720740	16	2.6	16	88	0	64	29	7	7	56	1.54
7720691--7720753	32	2.0	32	83	0	81	31	4	7	55	1.50
7720761--7720853	20	4.7	20	87	0	114	33	7	8	50	1.61
7720913--7720946	12	2.8	12	86	4	50	32	0	2	64	1.08
7720901--7721029	20	6.6	20	70	16	74	32	5	7	54	1.52
7721109--7721156	19	2.5	19	76	6	53	33	4	10	52	1.55
7721126--7721186	24	2.6	23	84	7	86	34	3	8	54	1.47
7721114--7721182	19	3.2	20	70	26	52	34	4	8	52	1.52
7721289--7721345	20	2.8	20	76	10	62	33	3	12	50	1.57
7726591--7726640	21	2.4	21	78	18	59	80	4	14	2	0.95
7726566--7726639	29	2.7	27	80	15	80	81	4	12	2	0.94
7728195--7728697	86	5.9	86	77	5	498	27	14	18	38	1.91
7728195--7728697	43	11.7	41	72	11	341	27	14	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7729617--7729659	16	2.7	16	77	0	50	27	9	11	51	1.69
7729678--7729724	20	2.3	20	89	7	69	36	6	10	46	1.64
7729853--7729921	32	2.2	32	94	0	120	28	4	13	53	1.58
7730011--7730058	25	2.0	24	87	4	69	33	2	12	52	1.51
7730161--7730231	20	3.7	18	78	15	79	33	4	9	52	1.54
7730196--7730238	18	2.2	20	84	8	54	41	2	9	46	1.48
7733734--7733772	21	2.0	20	90	10	62	69	0	0	30	0.89
7735477--7735506	12	2.4	12	94	5	51	60	0	10	30	1.30
7735497--7735544	24	2.0	25	87	4	71	58	2	2	37	1.22
7735513--7735601	31	2.9	31	75	8	74	55	3	0	41	1.17
7735545--7735605	31	2.0	31	86	0	86	52	3	0	44	1.17
7735776--7735850	38	2.1	35	85	7	96	37	9	12	41	1.74
7739041--7739079	3	12.7	3	94	5	69	66	0	2	30	1.05
7741290--7741441	75	2.0	76	97	1	288	27	14	18	39	1.90
7741411--7741476	34	1.9	34	90	0	105	22	18	6	53	1.66
7742256--7742299	1	44.0	1	81	0	52	0	9	0	90	0.44
7742256--7742296	9	4.7	9	85	14	59	0	9	0	90	0.46
7742257--7742299	12	3.8	11	88	11	61	0	9	0	90	0.45
7744261--7744301	21	2.0	21	95	0	73	63	14	4	17	1.47
7748653--7748696	21	2.1	21	86	0	61	43	34	9	13	1.76
7748739--7748801	24	2.5	24	75	19	56	39	30	11	19	1.86
7758444--7758496	16	3.4	16	74	10	65	49	22	13	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7758438--7758504	30	2.3	30	97	2	127	50	17	17	13	1.77
7762170--7762194	12	2.1	12	100	0	50	52	8	0	40	1.31
7763175--7763223	24	2.1	23	85	11	64	38	0	12	48	1.41
7763457--7763560	44	2.3	46	80	11	126	44	1	1	51	1.23
7763518--7763557	21	1.9	21	89	0	62	45	0	2	52	1.14
7763512--7763563	21	2.5	20	81	9	59	44	0	1	53	1.11
7763764--7763799	7	5.1	7	100	0	72	27	0	0	72	0.85
7763713--7763783	36	2.0	34	81	10	81	50	1	0	47	1.09
7763728--7763828	51	2.0	50	86	1	139	44	1	0	53	1.11
7765831--7765856	13	2.0	13	100	0	52	76	7	0	15	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120